Functional clusters

Information

  • Type MapMan
  • Description Solute transport.carrier-mediated transport.MFS superfamily.nitrate transporter (NRT2)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Ananas comosus LG11 1 CH_aco_111 2 2 0.000248839
Asparagus officinalis AsparagusV1_07 1 CH_aof_94 2 2 0.0000755915
Allium sativum chr2 1 CH_asa_149 5 42 0.0000000113428
Allium sativum chr7_1 1 CH_asa_765 3 20 0.000563565
Aegilops tauschii 6D 1 CH_ata_3 13 27 5.30822e-35
Brachypodium distachyon Bd3 1 CH_bdi_37 4 4 0.0000000000246262
Ceratophyllum demersum 4 1 CH_cde_242 2 2 0.000473878
Ceratophyllum demersum 5 1 CH_cde_243 2 2 0.000473878
Cenchrus purpureus GWHAORA00000004 1 CH_cpu_16 10 72 6.26832e-20
Cenchrus purpureus GWHAORA00000013 1 CH_cpu_85 7 45 0.000000000000525719
Digitaria exilis Dexi_CM05836_chr01A 1 CH_dex_288 3 6 0.00000281389
Eragrostis curvula 1 1 CH_ecu_76 5 6 0.0000000000000128142
Elaeis guineensis EG5.1_Chr1 1 CH_egu_300 2 3 0.000852528
Glycine max Gm12 1 CH_gma_617 2 2 0.00079707
Hordeum vulgare chr6H 1 CH_hvu_7 9 22 2.85324e-25
Lolium perenne Lp_chr6_0 1 CH_lpe_8 9 61 1.39484e-19
Magnolia biondii Chr18 1 CH_mbi_535 2 2 0.000291397
Miscanthus sinensis Chr07 1 CH_msi_176 3 4 0.000000348333
Miscanthus sinensis Chr08 1 CH_msi_629 2 2 0.000901568
Oryza alta GWHAZTO00000014 1 CH_oal_696 2 2 0.000423178
Oryza sativa ssp. indica Chr2 1 CH_osaindica_337 2 2 0.000309965
Oryza sativa Kitaake Chr2 1 CH_osak_418 2 2 0.000337714
Oryza sativa ssp. japonica chr02 1 CH_osa_326 2 2 0.000316874
Oropetium thomaeum Chromosome_1 1 CH_oth_74 3 3 0.000000152022
Phyllostachys edulis hic_scaffold_17 1 CH_ped_440 2 2 0.000407456
Panicum hallii Chr01 1 CH_pha_16 6 8 3.50704e-17
Populus trichocarpa Chr09 1 CH_ptr_511 2 2 0.000578001
Sorghum bicolor Chr04 1 CH_sbi_148 3 4 0.000000206509
Secale cereale GWHASIY00000004 1 CH_sce_17 8 9 5.63785e-22
Secale cereale GWHASIY00000004 1 CH_sce_38 6 6 4.44445e-16
Sequoiadendron giganteum chr1 1 CH_sgi_305 4 4 0.000000000072839
Sequoiadendron giganteum chr6 1 CH_sgi_615 3 4 0.00000170846
Setaria italica scaffold_1 1 CH_sit_32 6 13 7.12044e-16
Solanum lycopersicum SL4.0ch11 1 CH_sly_158 3 3 0.000000103353
Saccharum spontaneum Chr4D 1 CH_ssp_26 6 10 6.77872e-16
Saccharum spontaneum Chr4C 1 CH_ssp_316 3 3 0.000000696769
Setaria viridis Chr_01 1 CH_svi_46 5 10 0.000000000000784304
Triticum aestivum Chr6A 1 CH_tae_11 13 27 5.67847e-33
Triticum aestivum Chr6D 1 CH_tae_18 12 27 1.54675e-29
Triticum aestivum Chr6B 1 CH_tae_25 11 27 3.54185e-26
Triticum dicoccoides 6B 1 CH_tdi_36 7 22 7.10602e-16
Triticum dicoccoides 6A 1 CH_tdi_61 6 15 0.000000000000100454
Triticum turgidum chr6B 1 CH_ttu_17 9 33 2.41236e-21
Triticum turgidum chr6A 1 CH_ttu_24 8 27 8.88966e-19
Zoysia japonica ssp. nagirizaki Zjn_sc00152.1 1 CH_zjn_12 4 6 0.000000000287055
Zea mays B73 4 1 CH_zma_259 2 2 0.000511313
Ananas comosus LG11 2 CH_aco_111 2 2 0.000248839
Asparagus officinalis AsparagusV1_07 2 CH_aof_94 2 2 0.0000755915
Allium sativum chr2 2 CH_asa_149 5 42 0.0000000113428
Allium sativum chr7_1 2 CH_asa_765 3 20 0.000563565
Aegilops tauschii 6D 2 CH_ata_3 13 27 5.30822e-35
Brachypodium distachyon Bd3 2 CH_bdi_37 4 4 0.0000000000246262
Ceratophyllum demersum 4 2 CH_cde_242 2 2 0.000473878
Ceratophyllum demersum 5 2 CH_cde_243 2 2 0.000473878
Cenchrus purpureus GWHAORA00000004 2 CH_cpu_16 10 72 6.26832e-20
Cenchrus purpureus GWHAORA00000013 2 CH_cpu_85 7 45 0.000000000000525719
Digitaria exilis Dexi_CM05836_chr01A 2 CH_dex_288 3 6 0.00000281389
Eragrostis curvula 1 2 CH_ecu_76 5 6 0.0000000000000128142
Elaeis guineensis EG5.1_Chr1 2 CH_egu_300 2 3 0.000852528
Glycine max Gm12 2 CH_gma_617 2 2 0.00079707
Hordeum vulgare chr6H 2 CH_hvu_7 9 22 2.85324e-25
Lolium perenne Lp_chr6_0 2 CH_lpe_8 9 61 1.39484e-19
Magnolia biondii Chr18 2 CH_mbi_535 2 2 0.000291397
Miscanthus sinensis Chr07 2 CH_msi_176 3 4 0.000000348333
Miscanthus sinensis Chr08 2 CH_msi_629 2 2 0.000901568
Oryza alta GWHAZTO00000014 2 CH_oal_696 2 2 0.000423178
Oryza sativa ssp. indica Chr2 2 CH_osaindica_337 2 2 0.000309965
Oryza sativa Kitaake Chr2 2 CH_osak_418 2 2 0.000337714
Oryza sativa ssp. japonica chr02 2 CH_osa_326 2 2 0.000316874
Oropetium thomaeum Chromosome_1 2 CH_oth_74 3 3 0.000000152022
Phyllostachys edulis hic_scaffold_17 2 CH_ped_440 2 2 0.000407456
Panicum hallii Chr01 2 CH_pha_16 6 8 3.50704e-17
Populus trichocarpa Chr09 2 CH_ptr_511 2 2 0.000578001
Sorghum bicolor Chr04 2 CH_sbi_148 3 4 0.000000206509
Secale cereale GWHASIY00000004 2 CH_sce_17 8 9 5.63785e-22
Secale cereale GWHASIY00000004 2 CH_sce_38 6 6 4.44445e-16
Sequoiadendron giganteum chr1 2 CH_sgi_305 4 4 0.000000000072839
Sequoiadendron giganteum chr6 2 CH_sgi_615 3 4 0.00000170846
Setaria italica scaffold_1 2 CH_sit_32 6 13 7.12044e-16
Solanum lycopersicum SL4.0ch11 2 CH_sly_158 3 3 0.000000103353
Saccharum spontaneum Chr4D 2 CH_ssp_26 6 10 6.77872e-16
Saccharum spontaneum Chr4C 2 CH_ssp_316 3 3 0.000000696769
Setaria viridis Chr_01 2 CH_svi_46 5 10 0.000000000000784304
Triticum aestivum Chr6A 2 CH_tae_11 13 27 5.67847e-33
Triticum aestivum Chr6D 2 CH_tae_18 12 27 1.54675e-29
Triticum aestivum Chr6B 2 CH_tae_25 11 27 3.54185e-26
Triticum dicoccoides 6B 2 CH_tdi_36 7 22 7.10602e-16
Triticum dicoccoides 6A 2 CH_tdi_61 6 15 0.000000000000100454
Triticum turgidum chr6B 2 CH_ttu_17 9 33 2.41236e-21
Triticum turgidum chr6A 2 CH_ttu_24 8 27 8.88966e-19
Zoysia japonica ssp. nagirizaki Zjn_sc00152.1 2 CH_zjn_12 4 6 0.000000000287055
Zea mays B73 4 2 CH_zma_259 2 2 0.000511313

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001