Functional clusters
Information
- Type MapMan
- Description Solute transport.carrier-mediated transport.MFS superfamily.SP family.monosaccharide transporter (STP)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Ananas comosus | LG12 | 1 | CH_aco_87 | 3 | 6 | 0.000140159 |
| Allium sativum | chr4 | 1 | CH_asa_464 | 3 | 9 | 0.00010584 |
| Aegilops tauschii | 2D | 1 | CH_ata_54 | 5 | 11 | 0.000000000683981 |
| Brachypodium distachyon | Bd5 | 1 | CH_bdi_17 | 6 | 6 | 0.00000000000000462125 |
| Cenchrus purpureus | GWHAORA00000005 | 1 | CH_cpu_610 | 3 | 3 | 0.0000891591 |
| Cenchrus purpureus | GWHAORA00000005 | 1 | CH_cpu_99 | 6 | 8 | 0.00000000000302289 |
| Dioscorea dumetorum | contig542 | 1 | CH_ddu_18 | 7 | 8 | 0.00000000000000105337 |
| Dioscorea dumetorum | contig544 | 1 | CH_ddu_29 | 6 | 9 | 0.00000000000968093 |
| Digitaria exilis | Dexi_CM05836_chr07B | 1 | CH_dex_17 | 9 | 14 | 5.53071e-20 |
| Digitaria exilis | Dexi_CM05836_chr07A | 1 | CH_dex_33 | 8 | 15 | 2.08248e-16 |
| Eragrostis curvula | Contig30 | 1 | CH_ecu_165 | 5 | 12 | 0.000000000880915 |
| Elaeis guineensis | EG5.1_Chr12 | 1 | CH_egu_100 | 3 | 3 | 0.0000109851 |
| Glycine max | Gm04 | 1 | CH_gma_266 | 3 | 3 | 0.00000877364 |
| Hordeum vulgare | chr2H | 1 | CH_hvu_74 | 5 | 8 | 0.00000000011185 |
| Lolium perenne | Lp_chr2_0 | 1 | CH_lpe_70 | 4 | 4 | 0.00000000126029 |
| Miscanthus sinensis | Chr12 | 1 | CH_msi_45 | 6 | 12 | 0.000000000000650684 |
| Oryza alta | GWHAZTO00000016 | 1 | CH_oal_42 | 6 | 14 | 0.00000000000209729 |
| Oryza alta | GWHAZTO00000004 | 1 | CH_oal_98 | 5 | 15 | 0.00000000507316 |
| Oryza brachyantha | 4 | 1 | CH_obr_22 | 6 | 12 | 0.000000000000428213 |
| Oryza sativa ssp. indica | Chr2 | 1 | CH_osaindica_186 | 3 | 3 | 0.0000117099 |
| Oryza sativa ssp. indica | Chr4 | 1 | CH_osaindica_36 | 6 | 10 | 0.00000000000051378 |
| Oryza sativa Kitaake | Chr2 | 1 | CH_osak_252 | 3 | 3 | 0.0000139003 |
| Oryza sativa Kitaake | Chr4 | 1 | CH_osak_55 | 6 | 8 | 0.000000000000105268 |
| Oryza sativa ssp. japonica | chr02 | 1 | CH_osa_192 | 3 | 5 | 0.000048926 |
| Oryza sativa ssp. japonica | chr04 | 1 | CH_osa_68 | 5 | 14 | 0.00000000603821 |
| Oropetium thomaeum | Chromosome_6 | 1 | CH_oth_10 | 6 | 8 | 0.000000000000154863 |
| Phyllostachys edulis | hic_scaffold_17 | 1 | CH_ped_306 | 3 | 4 | 0.000106125 |
| Phyllostachys edulis | hic_scaffold_23 | 1 | CH_ped_398 | 3 | 5 | 0.000265154 |
| Phyllostachys edulis | hic_scaffold_24 | 1 | CH_ped_68 | 5 | 6 | 0.0000000000929027 |
| Panicum hallii | Chr07 | 1 | CH_pha_38 | 6 | 11 | 0.00000000000092519 |
| Physcomitrium patens | Chr08 | 1 | CH_ppa_236 | 2 | 2 | 0.000367636 |
| Populus trichocarpa | Chr07 | 1 | CH_ptr_231 | 4 | 9 | 0.00000149029 |
| Populus trichocarpa | Chr08 | 1 | CH_ptr_349 | 3 | 5 | 0.000163987 |
| Sorghum bicolor | Chr06 | 1 | CH_sbi_96 | 5 | 12 | 0.00000000298128 |
| Secale cereale | GWHASIY00000007 | 1 | CH_sce_657 | 3 | 4 | 0.000164605 |
| Secale cereale | GWHASIY00000006 | 1 | CH_sce_658 | 3 | 4 | 0.000164605 |
| Secale cereale | GWHASIY00000006 | 1 | CH_sce_99 | 6 | 13 | 0.0000000000530473 |
| Sequoiadendron giganteum | chr6 | 1 | CH_sgi_351 | 4 | 5 | 0.00000000123975 |
| Sequoiadendron giganteum | chr1 | 1 | CH_sgi_644 | 3 | 4 | 0.00000407161 |
| Setaria italica | scaffold_1 | 1 | CH_sit_247 | 3 | 3 | 0.0000131396 |
| Setaria italica | scaffold_7 | 1 | CH_sit_51 | 6 | 11 | 0.00000000000157301 |
| Saccharum spontaneum | Chr5C | 1 | CH_ssp_363 | 4 | 6 | 0.0000012356 |
| Saccharum spontaneum | Chr5B | 1 | CH_ssp_415 | 4 | 7 | 0.00000288081 |
| Saccharum spontaneum | Chr5D | 1 | CH_ssp_508 | 4 | 9 | 0.0000103546 |
| Saccharum spontaneum | Chr5A | 1 | CH_ssp_83 | 6 | 12 | 0.0000000000699614 |
| Setaria viridis | Chr_07 | 1 | CH_svi_45 | 6 | 11 | 0.000000000000540028 |
| Triticum aestivum | Chr5A | 1 | CH_tae_1100 | 3 | 4 | 0.000153508 |
| Triticum aestivum | Chr5B | 1 | CH_tae_1101 | 3 | 4 | 0.000153508 |
| Triticum aestivum | Chr5D | 1 | CH_tae_1102 | 3 | 4 | 0.000153508 |
| Triticum aestivum | Chr2B | 1 | CH_tae_346 | 5 | 8 | 0.0000000010145 |
| Triticum aestivum | Chr2A | 1 | CH_tae_347 | 5 | 8 | 0.0000000010145 |
| Triticum aestivum | Chr2D | 1 | CH_tae_399 | 5 | 10 | 0.00000000456003 |
| Triticum dicoccoides | 5B | 1 | CH_tdi_396 | 3 | 4 | 0.0000856901 |
| Triticum dicoccoides | 2B | 1 | CH_tdi_89 | 5 | 6 | 0.0000000000535769 |
| Triticum dicoccoides | 2A | 1 | CH_tdi_97 | 5 | 7 | 0.000000000187419 |
| Triticum turgidum | chr2B | 1 | CH_ttu_187 | 4 | 5 | 0.0000000163359 |
| Triticum turgidum | chr2A | 1 | CH_ttu_218 | 4 | 5 | 0.0000000816345 |
| Triticum turgidum | chr5A | 1 | CH_ttu_513 | 3 | 4 | 0.0000949815 |
| Triticum turgidum | chr5B | 1 | CH_ttu_514 | 3 | 4 | 0.0000949815 |
| Zoysia japonica ssp. nagirizaki | Zjn_sc00006.1 | 1 | CH_zjn_124 | 3 | 6 | 0.0000830286 |
| Ananas comosus | LG12 | 2 | CH_aco_87 | 3 | 6 | 0.000140159 |
| Allium sativum | chr4 | 2 | CH_asa_464 | 3 | 9 | 0.00010584 |
| Aegilops tauschii | 2D | 2 | CH_ata_54 | 5 | 11 | 0.000000000683981 |
| Brachypodium distachyon | Bd5 | 2 | CH_bdi_17 | 6 | 6 | 0.00000000000000462125 |
| Cenchrus purpureus | GWHAORA00000005 | 2 | CH_cpu_610 | 3 | 3 | 0.0000891591 |
| Cenchrus purpureus | GWHAORA00000005 | 2 | CH_cpu_99 | 6 | 8 | 0.00000000000302289 |
| Dioscorea dumetorum | contig542 | 2 | CH_ddu_18 | 7 | 8 | 0.00000000000000105337 |
| Dioscorea dumetorum | contig544 | 2 | CH_ddu_29 | 6 | 9 | 0.00000000000968093 |
| Digitaria exilis | Dexi_CM05836_chr07B | 2 | CH_dex_17 | 9 | 14 | 5.53071e-20 |
| Digitaria exilis | Dexi_CM05836_chr07A | 2 | CH_dex_33 | 8 | 15 | 2.08248e-16 |
| Eragrostis curvula | Contig30 | 2 | CH_ecu_165 | 5 | 12 | 0.000000000880915 |
| Elaeis guineensis | EG5.1_Chr12 | 2 | CH_egu_100 | 3 | 3 | 0.0000109851 |
| Glycine max | Gm04 | 2 | CH_gma_266 | 3 | 3 | 0.00000877364 |
| Hordeum vulgare | chr2H | 2 | CH_hvu_74 | 5 | 8 | 0.00000000011185 |
| Lolium perenne | Lp_chr2_0 | 2 | CH_lpe_70 | 4 | 4 | 0.00000000126029 |
| Miscanthus sinensis | Chr12 | 2 | CH_msi_45 | 6 | 12 | 0.000000000000650684 |
| Oryza alta | GWHAZTO00000016 | 2 | CH_oal_42 | 6 | 14 | 0.00000000000209729 |
| Oryza alta | GWHAZTO00000004 | 2 | CH_oal_98 | 5 | 15 | 0.00000000507316 |
| Oryza brachyantha | 4 | 2 | CH_obr_22 | 6 | 12 | 0.000000000000428213 |
| Oryza sativa ssp. indica | Chr2 | 2 | CH_osaindica_186 | 3 | 3 | 0.0000117099 |
| Oryza sativa ssp. indica | Chr4 | 2 | CH_osaindica_36 | 6 | 10 | 0.00000000000051378 |
| Oryza sativa Kitaake | Chr2 | 2 | CH_osak_252 | 3 | 3 | 0.0000139003 |
| Oryza sativa Kitaake | Chr4 | 2 | CH_osak_55 | 6 | 8 | 0.000000000000105268 |
| Oryza sativa ssp. japonica | chr02 | 2 | CH_osa_192 | 3 | 5 | 0.000048926 |
| Oryza sativa ssp. japonica | chr04 | 2 | CH_osa_68 | 5 | 14 | 0.00000000603821 |
| Oropetium thomaeum | Chromosome_6 | 2 | CH_oth_10 | 6 | 8 | 0.000000000000154863 |
| Phyllostachys edulis | hic_scaffold_17 | 2 | CH_ped_306 | 3 | 4 | 0.000106125 |
| Phyllostachys edulis | hic_scaffold_23 | 2 | CH_ped_398 | 3 | 5 | 0.000265154 |
| Phyllostachys edulis | hic_scaffold_24 | 2 | CH_ped_68 | 5 | 6 | 0.0000000000929027 |
| Panicum hallii | Chr07 | 2 | CH_pha_38 | 6 | 11 | 0.00000000000092519 |
| Physcomitrium patens | Chr08 | 2 | CH_ppa_236 | 2 | 2 | 0.000367636 |
| Populus trichocarpa | Chr07 | 2 | CH_ptr_231 | 4 | 9 | 0.00000149029 |
| Populus trichocarpa | Chr08 | 2 | CH_ptr_349 | 3 | 5 | 0.000163987 |
| Sorghum bicolor | Chr06 | 2 | CH_sbi_96 | 5 | 12 | 0.00000000298128 |
| Secale cereale | GWHASIY00000007 | 2 | CH_sce_657 | 3 | 4 | 0.000164605 |
| Secale cereale | GWHASIY00000006 | 2 | CH_sce_658 | 3 | 4 | 0.000164605 |
| Secale cereale | GWHASIY00000006 | 2 | CH_sce_99 | 6 | 13 | 0.0000000000530473 |
| Sequoiadendron giganteum | chr6 | 2 | CH_sgi_351 | 4 | 5 | 0.00000000123975 |
| Sequoiadendron giganteum | chr1 | 2 | CH_sgi_644 | 3 | 4 | 0.00000407161 |
| Setaria italica | scaffold_1 | 2 | CH_sit_247 | 3 | 3 | 0.0000131396 |
| Setaria italica | scaffold_7 | 2 | CH_sit_51 | 6 | 11 | 0.00000000000157301 |
| Saccharum spontaneum | Chr5C | 2 | CH_ssp_363 | 4 | 6 | 0.0000012356 |
| Saccharum spontaneum | Chr5B | 2 | CH_ssp_415 | 4 | 7 | 0.00000288081 |
| Saccharum spontaneum | Chr5D | 2 | CH_ssp_508 | 4 | 9 | 0.0000103546 |
| Saccharum spontaneum | Chr5A | 2 | CH_ssp_83 | 6 | 12 | 0.0000000000699614 |
| Setaria viridis | Chr_07 | 2 | CH_svi_45 | 6 | 11 | 0.000000000000540028 |
| Triticum aestivum | Chr5A | 2 | CH_tae_1100 | 3 | 4 | 0.000153508 |
| Triticum aestivum | Chr5B | 2 | CH_tae_1101 | 3 | 4 | 0.000153508 |
| Triticum aestivum | Chr5D | 2 | CH_tae_1102 | 3 | 4 | 0.000153508 |
| Triticum aestivum | Chr2B | 2 | CH_tae_346 | 5 | 8 | 0.0000000010145 |
| Triticum aestivum | Chr2A | 2 | CH_tae_347 | 5 | 8 | 0.0000000010145 |
| Triticum aestivum | Chr2D | 2 | CH_tae_399 | 5 | 10 | 0.00000000456003 |
| Triticum dicoccoides | 5B | 2 | CH_tdi_396 | 3 | 4 | 0.0000856901 |
| Triticum dicoccoides | 2B | 2 | CH_tdi_89 | 5 | 6 | 0.0000000000535769 |
| Triticum dicoccoides | 2A | 2 | CH_tdi_97 | 5 | 7 | 0.000000000187419 |
| Triticum turgidum | chr2B | 2 | CH_ttu_187 | 4 | 5 | 0.0000000163359 |
| Triticum turgidum | chr2A | 2 | CH_ttu_218 | 4 | 5 | 0.0000000816345 |
| Triticum turgidum | chr5A | 2 | CH_ttu_513 | 3 | 4 | 0.0000949815 |
| Triticum turgidum | chr5B | 2 | CH_ttu_514 | 3 | 4 | 0.0000949815 |
| Zoysia japonica ssp. nagirizaki | Zjn_sc00006.1 | 2 | CH_zjn_124 | 3 | 6 | 0.0000830286 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |