Functional clusters

Information

  • Type MapMan
  • Description Solute transport.carrier-mediated transport.MFS superfamily.SP family.monosaccharide transporter (ERD6)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Ananas comosus LG04 1 CH_aco_160 2 2 0.000829463
Asparagus officinalis AsparagusV1_07 1 CH_aof_133 2 2 0.000226775
Arabidopsis thaliana Chr1 1 CH_ath_120 4 10 0.0000000573581
Arabidopsis thaliana Chr3 1 CH_ath_80 4 6 0.00000000410006
Amborella trichopoda AmTr_v1.0_scaffold00019 1 CH_atr_122 3 6 0.00000189276
Calamus simplicifolius scaffold728 1 CH_calsi_91 3 3 0.000000567866
Digitaria exilis Dexi_CM05836_chr05B 1 CH_dex_572 2 2 0.000334202
Eragrostis curvula Contig25 1 CH_ecu_698 2 2 0.000387725
Miscanthus sinensis Chr17 1 CH_msi_124 4 9 0.0000000172117
Oryza brachyantha 3 1 CH_obr_314 2 2 0.000896004
Oryza brachyantha 5 1 CH_obr_315 2 2 0.000896004
Oryza sativa ssp. indica Chr5 1 CH_osaindica_370 2 2 0.000516609
Oryza sativa Kitaake Chr3 1 CH_osak_481 2 2 0.000844286
Oryza sativa Kitaake Chr5 1 CH_osak_482 2 2 0.000844286
Oryza sativa ssp. japonica chr03 1 CH_osa_364 2 2 0.000528123
Panicum hallii Chr03 1 CH_pha_422 2 2 0.000871662
Panicum hallii Chr09 1 CH_pha_423 2 2 0.000871662
Populus trichocarpa Chr13 1 CH_ptr_244 3 4 0.00000330687
Sorghum bicolor Chr09 1 CH_sbi_185 3 4 0.00000115637
Setaria italica scaffold_9 1 CH_sit_463 2 2 0.00087065
Setaria italica scaffold_3 1 CH_sit_464 2 2 0.00087065
Solanum lycopersicum SL4.0ch01 1 CH_sly_279 3 8 0.0000346947
Setaria viridis Chr_03 1 CH_svi_469 2 2 0.000782677
Triticum aestivum Chr4B 1 CH_tae_410 4 5 0.00000000578274
Triticum aestivum Chr4D 1 CH_tae_411 4 5 0.00000000578274
Zea mays B73 6 1 CH_zma_104 3 4 0.00000258787
Zea mays B73 8 1 CH_zma_90 3 3 0.000000647082
Ananas comosus LG04 2 CH_aco_160 2 2 0.000829463
Asparagus officinalis AsparagusV1_07 2 CH_aof_133 2 2 0.000226775
Arabidopsis thaliana Chr1 2 CH_ath_120 4 10 0.0000000573581
Arabidopsis thaliana Chr3 2 CH_ath_80 4 6 0.00000000410006
Amborella trichopoda AmTr_v1.0_scaffold00019 2 CH_atr_122 3 6 0.00000189276
Calamus simplicifolius scaffold728 2 CH_calsi_91 3 3 0.000000567866
Digitaria exilis Dexi_CM05836_chr05B 2 CH_dex_572 2 2 0.000334202
Eragrostis curvula Contig25 2 CH_ecu_698 2 2 0.000387725
Miscanthus sinensis Chr17 2 CH_msi_124 4 9 0.0000000172117
Oryza brachyantha 3 2 CH_obr_314 2 2 0.000896004
Oryza brachyantha 5 2 CH_obr_315 2 2 0.000896004
Oryza sativa ssp. indica Chr5 2 CH_osaindica_370 2 2 0.000516609
Oryza sativa Kitaake Chr3 2 CH_osak_481 2 2 0.000844286
Oryza sativa Kitaake Chr5 2 CH_osak_482 2 2 0.000844286
Oryza sativa ssp. japonica chr03 2 CH_osa_364 2 2 0.000528123
Panicum hallii Chr03 2 CH_pha_422 2 2 0.000871662
Panicum hallii Chr09 2 CH_pha_423 2 2 0.000871662
Populus trichocarpa Chr13 2 CH_ptr_244 3 4 0.00000330687
Sorghum bicolor Chr09 2 CH_sbi_185 3 4 0.00000115637
Setaria italica scaffold_9 2 CH_sit_463 2 2 0.00087065
Setaria italica scaffold_3 2 CH_sit_464 2 2 0.00087065
Solanum lycopersicum SL4.0ch01 2 CH_sly_279 3 8 0.0000346947
Setaria viridis Chr_03 2 CH_svi_469 2 2 0.000782677
Triticum aestivum Chr4B 2 CH_tae_410 4 5 0.00000000578274
Triticum aestivum Chr4D 2 CH_tae_411 4 5 0.00000000578274
Zea mays B73 6 2 CH_zma_104 3 4 0.00000258787
Zea mays B73 8 2 CH_zma_90 3 3 0.000000647082

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001