Functional clusters
Information
- Type MapMan
- Description Solute transport.primary active transport.ABC superfamily.ABC2 family.subfamily ABCG transporter
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Anthoceros agrestis | Sc2ySwM_340 | 1 | CH_aag_13 | 6 | 11 | 0.00000000000611111 |
| Anthoceros agrestis | Sc2ySwM_117 | 1 | CH_aag_22 | 5 | 12 | 0.0000000130317 |
| Allium sativum | chr5 | 1 | CH_asa_121 | 5 | 8 | 0.00000000328775 |
| Allium sativum | chr6 | 1 | CH_asa_319 | 4 | 10 | 0.0000124457 |
| Arabidopsis thaliana | Chr4 | 1 | CH_ath_116 | 4 | 5 | 0.0000000478613 |
| Arabidopsis thaliana | Chr3 | 1 | CH_ath_153 | 4 | 7 | 0.000000334713 |
| Amborella trichopoda | AmTr_v1.0_scaffold00122 | 1 | CH_atr_227 | 3 | 4 | 0.000187648 |
| Amborella trichopoda | AmTr_v1.0_scaffold00069 | 1 | CH_atr_273 | 3 | 5 | 0.000468696 |
| Calamus simplicifolius | scaffold725 | 1 | CH_calsi_134 | 3 | 3 | 0.0000303876 |
| Calamus simplicifolius | scaffold204 | 1 | CH_calsi_263 | 3 | 5 | 0.000303427 |
| Cenchrus purpureus | GWHAORA00000009 | 1 | CH_cpu_234 | 6 | 16 | 0.0000000120005 |
| Cenchrus purpureus | GWHAORA00000007 | 1 | CH_cpu_289 | 5 | 9 | 0.00000011515 |
| Dioscorea dumetorum | contig3 | 1 | CH_ddu_190 | 3 | 3 | 0.000131921 |
| Dioscorea dumetorum | contig390 | 1 | CH_ddu_191 | 3 | 3 | 0.000131921 |
| Digitaria exilis | Dexi_CM05836_chr05A | 1 | CH_dex_232 | 5 | 17 | 0.000000512112 |
| Digitaria exilis | Dexi_CM05836_chr05B | 1 | CH_dex_261 | 4 | 6 | 0.00000120863 |
| Eragrostis curvula | Contig8 | 1 | CH_ecu_205 | 5 | 10 | 0.00000000652977 |
| Eragrostis curvula | 3 | 1 | CH_ecu_779 | 3 | 6 | 0.000729851 |
| Elaeis guineensis | EG5.1_Chr13 | 1 | CH_egu_175 | 3 | 3 | 0.000113566 |
| Elaeis guineensis | EG5.1_Chr3 | 1 | CH_egu_93 | 4 | 7 | 0.00000656381 |
| Glycine max | Gm13 | 1 | CH_gma_104 | 6 | 12 | 0.00000000132215 |
| Glycine max | Gm08 | 1 | CH_gma_132 | 5 | 7 | 0.0000000178937 |
| Glycine max | Gm15 | 1 | CH_gma_474 | 3 | 3 | 0.000289668 |
| Glycine max | Gm03 | 1 | CH_gma_475 | 3 | 3 | 0.000289668 |
| Lolium perenne | Lp_chr5_0 | 1 | CH_lpe_365 | 3 | 6 | 0.000439125 |
| Magnolia biondii | Chr04 | 1 | CH_mbi_103 | 6 | 25 | 0.00000000346631 |
| Magnolia biondii | Chr01 | 1 | CH_mbi_83 | 6 | 17 | 0.000000000243614 |
| Marchantia polymorpha | scaffold_109 | 1 | CH_mpo_113 | 3 | 4 | 0.000398801 |
| Oryza alta | GWHAZTO00000021 | 1 | CH_oal_285 | 4 | 8 | 0.00000618858 |
| Oryza alta | GWHAZTO00000024 | 1 | CH_oal_335 | 4 | 11 | 0.0000291076 |
| Oryza alta | GWHAZTO00000001 | 1 | CH_oal_347 | 4 | 12 | 0.0000436279 |
| Oryza alta | GWHAZTO00000018 | 1 | CH_oal_456 | 3 | 3 | 0.0000926448 |
| Oryza sativa ssp. indica | Chr1 | 1 | CH_osaindica_151 | 4 | 6 | 0.00000131215 |
| Oryza sativa ssp. indica | Chr9 | 1 | CH_osaindica_386 | 3 | 5 | 0.00073623 |
| Oryza sativa Kitaake | Chr9 | 1 | CH_osak_230 | 4 | 6 | 0.00000169676 |
| Oryza sativa Kitaake | Chr1 | 1 | CH_osak_237 | 4 | 7 | 0.00000395498 |
| Oryza sativa ssp. japonica | chr01 | 1 | CH_osa_226 | 3 | 3 | 0.0000593683 |
| Oryza sativa ssp. japonica | chr09 | 1 | CH_osa_56 | 5 | 7 | 0.000000000427378 |
| Phyllostachys edulis | hic_scaffold_16 | 1 | CH_ped_245 | 4 | 8 | 0.0000145497 |
| Panicum hallii | Chr05 | 1 | CH_pha_149 | 4 | 5 | 0.000000479892 |
| Populus trichocarpa | Chr01 | 1 | CH_ptr_200 | 4 | 4 | 0.000000471819 |
| Sorghum bicolor | Chr03 | 1 | CH_sbi_28 | 8 | 13 | 0.00000000000000100354 |
| Secale cereale | GWHASIY00000006 | 1 | CH_sce_672 | 3 | 3 | 0.000245889 |
| Secale cereale | GWHASIY00000003 | 1 | CH_sce_673 | 3 | 3 | 0.000245889 |
| Sequoiadendron giganteum | chr10 | 1 | CH_sgi_105 | 10 | 18 | 3.92948e-19 |
| Sequoiadendron giganteum | chr4 | 1 | CH_sgi_1187 | 3 | 3 | 0.000240378 |
| Sequoiadendron giganteum | chr7 | 1 | CH_sgi_1409 | 3 | 4 | 0.000960223 |
| Sequoiadendron giganteum | chr8 | 1 | CH_sgi_233 | 7 | 11 | 0.000000000000685595 |
| Sequoiadendron giganteum | chr3 | 1 | CH_sgi_239 | 6 | 6 | 0.00000000000124331 |
| Sequoiadendron giganteum | chr7 | 1 | CH_sgi_542 | 5 | 10 | 0.000000182417 |
| Setaria italica | scaffold_5 | 1 | CH_sit_172 | 4 | 5 | 0.000000478223 |
| Solanum lycopersicum | SL4.0ch05 | 1 | CH_sly_197 | 4 | 5 | 0.00000103324 |
| Solanum lycopersicum | SL4.0ch11 | 1 | CH_sly_377 | 3 | 3 | 0.000135573 |
| Selaginella moellendorffii | scaffold_18 | 1 | CH_smo_19 | 8 | 32 | 0.000000000125032 |
| Spirodela polyrhiza | pseudo12 | 1 | CH_spo_111 | 4 | 11 | 0.0000685625 |
| Spirodela polyrhiza | pseudo3 | 1 | CH_spo_196 | 3 | 4 | 0.000483656 |
| Spirodela polyrhiza | pseudo10 | 1 | CH_spo_197 | 3 | 4 | 0.000483656 |
| Saccharum spontaneum | Chr3D | 1 | CH_ssp_1042 | 3 | 3 | 0.000398918 |
| Saccharum spontaneum | Chr3C | 1 | CH_ssp_220 | 6 | 21 | 0.0000000945752 |
| Setaria viridis | Chr_05 | 1 | CH_svi_210 | 4 | 7 | 0.00000289444 |
| Triticum aestivum | Chr5B | 1 | CH_tae_1289 | 3 | 3 | 0.000407445 |
| Triticum aestivum | Chr5D | 1 | CH_tae_1290 | 3 | 3 | 0.000407445 |
| Triticum dicoccoides | 5B | 1 | CH_tdi_620 | 3 | 4 | 0.000880152 |
| Triticum turgidum | chr5B | 1 | CH_ttu_752 | 3 | 4 | 0.000975557 |
| Zea mays B104 | scaffold3.3689 | 1 | CH_zma-b104_51 | 2 | 2 | 0.000914355 |
| Zostera marina | Chr02 | 1 | CH_zosmarina_224 | 4 | 22 | 0.000896625 |
| Anthoceros agrestis | Sc2ySwM_340 | 2 | CH_aag_13 | 6 | 11 | 0.00000000000611111 |
| Anthoceros agrestis | Sc2ySwM_117 | 2 | CH_aag_22 | 5 | 12 | 0.0000000130317 |
| Allium sativum | chr5 | 2 | CH_asa_121 | 5 | 8 | 0.00000000328775 |
| Allium sativum | chr6 | 2 | CH_asa_319 | 4 | 10 | 0.0000124457 |
| Arabidopsis thaliana | Chr4 | 2 | CH_ath_116 | 4 | 5 | 0.0000000478613 |
| Arabidopsis thaliana | Chr3 | 2 | CH_ath_153 | 4 | 7 | 0.000000334713 |
| Amborella trichopoda | AmTr_v1.0_scaffold00122 | 2 | CH_atr_227 | 3 | 4 | 0.000187648 |
| Amborella trichopoda | AmTr_v1.0_scaffold00069 | 2 | CH_atr_273 | 3 | 5 | 0.000468696 |
| Calamus simplicifolius | scaffold725 | 2 | CH_calsi_134 | 3 | 3 | 0.0000303876 |
| Calamus simplicifolius | scaffold204 | 2 | CH_calsi_263 | 3 | 5 | 0.000303427 |
| Cenchrus purpureus | GWHAORA00000009 | 2 | CH_cpu_234 | 6 | 16 | 0.0000000120005 |
| Cenchrus purpureus | GWHAORA00000007 | 2 | CH_cpu_289 | 5 | 9 | 0.00000011515 |
| Dioscorea dumetorum | contig3 | 2 | CH_ddu_190 | 3 | 3 | 0.000131921 |
| Dioscorea dumetorum | contig390 | 2 | CH_ddu_191 | 3 | 3 | 0.000131921 |
| Digitaria exilis | Dexi_CM05836_chr05A | 2 | CH_dex_232 | 5 | 17 | 0.000000512112 |
| Digitaria exilis | Dexi_CM05836_chr05B | 2 | CH_dex_261 | 4 | 6 | 0.00000120863 |
| Eragrostis curvula | Contig8 | 2 | CH_ecu_205 | 5 | 10 | 0.00000000652977 |
| Eragrostis curvula | 3 | 2 | CH_ecu_779 | 3 | 6 | 0.000729851 |
| Elaeis guineensis | EG5.1_Chr13 | 2 | CH_egu_175 | 3 | 3 | 0.000113566 |
| Elaeis guineensis | EG5.1_Chr3 | 2 | CH_egu_93 | 4 | 7 | 0.00000656381 |
| Glycine max | Gm13 | 2 | CH_gma_104 | 6 | 12 | 0.00000000132215 |
| Glycine max | Gm08 | 2 | CH_gma_132 | 5 | 7 | 0.0000000178937 |
| Glycine max | Gm15 | 2 | CH_gma_474 | 3 | 3 | 0.000289668 |
| Glycine max | Gm03 | 2 | CH_gma_475 | 3 | 3 | 0.000289668 |
| Lolium perenne | Lp_chr5_0 | 2 | CH_lpe_365 | 3 | 6 | 0.000439125 |
| Magnolia biondii | Chr04 | 2 | CH_mbi_103 | 6 | 25 | 0.00000000346631 |
| Magnolia biondii | Chr01 | 2 | CH_mbi_83 | 6 | 17 | 0.000000000243614 |
| Marchantia polymorpha | scaffold_109 | 2 | CH_mpo_113 | 3 | 4 | 0.000398801 |
| Oryza alta | GWHAZTO00000021 | 2 | CH_oal_285 | 4 | 8 | 0.00000618858 |
| Oryza alta | GWHAZTO00000024 | 2 | CH_oal_335 | 4 | 11 | 0.0000291076 |
| Oryza alta | GWHAZTO00000001 | 2 | CH_oal_347 | 4 | 12 | 0.0000436279 |
| Oryza alta | GWHAZTO00000018 | 2 | CH_oal_456 | 3 | 3 | 0.0000926448 |
| Oryza sativa ssp. indica | Chr1 | 2 | CH_osaindica_151 | 4 | 6 | 0.00000131215 |
| Oryza sativa ssp. indica | Chr9 | 2 | CH_osaindica_386 | 3 | 5 | 0.00073623 |
| Oryza sativa Kitaake | Chr9 | 2 | CH_osak_230 | 4 | 6 | 0.00000169676 |
| Oryza sativa Kitaake | Chr1 | 2 | CH_osak_237 | 4 | 7 | 0.00000395498 |
| Oryza sativa ssp. japonica | chr01 | 2 | CH_osa_226 | 3 | 3 | 0.0000593683 |
| Oryza sativa ssp. japonica | chr09 | 2 | CH_osa_56 | 5 | 7 | 0.000000000427378 |
| Phyllostachys edulis | hic_scaffold_16 | 2 | CH_ped_245 | 4 | 8 | 0.0000145497 |
| Panicum hallii | Chr05 | 2 | CH_pha_149 | 4 | 5 | 0.000000479892 |
| Populus trichocarpa | Chr01 | 2 | CH_ptr_200 | 4 | 4 | 0.000000471819 |
| Sorghum bicolor | Chr03 | 2 | CH_sbi_28 | 8 | 13 | 0.00000000000000100354 |
| Secale cereale | GWHASIY00000006 | 2 | CH_sce_672 | 3 | 3 | 0.000245889 |
| Secale cereale | GWHASIY00000003 | 2 | CH_sce_673 | 3 | 3 | 0.000245889 |
| Sequoiadendron giganteum | chr10 | 2 | CH_sgi_105 | 10 | 18 | 3.92948e-19 |
| Sequoiadendron giganteum | chr4 | 2 | CH_sgi_1187 | 3 | 3 | 0.000240378 |
| Sequoiadendron giganteum | chr7 | 2 | CH_sgi_1409 | 3 | 4 | 0.000960223 |
| Sequoiadendron giganteum | chr8 | 2 | CH_sgi_233 | 7 | 11 | 0.000000000000685595 |
| Sequoiadendron giganteum | chr3 | 2 | CH_sgi_239 | 6 | 6 | 0.00000000000124331 |
| Sequoiadendron giganteum | chr7 | 2 | CH_sgi_542 | 5 | 10 | 0.000000182417 |
| Setaria italica | scaffold_5 | 2 | CH_sit_172 | 4 | 5 | 0.000000478223 |
| Solanum lycopersicum | SL4.0ch05 | 2 | CH_sly_197 | 4 | 5 | 0.00000103324 |
| Solanum lycopersicum | SL4.0ch11 | 2 | CH_sly_377 | 3 | 3 | 0.000135573 |
| Selaginella moellendorffii | scaffold_18 | 2 | CH_smo_19 | 8 | 32 | 0.000000000125032 |
| Spirodela polyrhiza | pseudo12 | 2 | CH_spo_111 | 4 | 11 | 0.0000685625 |
| Spirodela polyrhiza | pseudo3 | 2 | CH_spo_196 | 3 | 4 | 0.000483656 |
| Spirodela polyrhiza | pseudo10 | 2 | CH_spo_197 | 3 | 4 | 0.000483656 |
| Saccharum spontaneum | Chr3D | 2 | CH_ssp_1042 | 3 | 3 | 0.000398918 |
| Saccharum spontaneum | Chr3C | 2 | CH_ssp_220 | 6 | 21 | 0.0000000945752 |
| Setaria viridis | Chr_05 | 2 | CH_svi_210 | 4 | 7 | 0.00000289444 |
| Triticum aestivum | Chr5B | 2 | CH_tae_1289 | 3 | 3 | 0.000407445 |
| Triticum aestivum | Chr5D | 2 | CH_tae_1290 | 3 | 3 | 0.000407445 |
| Triticum dicoccoides | 5B | 2 | CH_tdi_620 | 3 | 4 | 0.000880152 |
| Triticum turgidum | chr5B | 2 | CH_ttu_752 | 3 | 4 | 0.000975557 |
| Zea mays B104 | scaffold3.3689 | 2 | CH_zma-b104_51 | 2 | 2 | 0.000914355 |
| Zostera marina | Chr02 | 2 | CH_zosmarina_224 | 4 | 22 | 0.000896625 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |