Functional clusters
Information
- Type MapMan
- Description Solute transport.primary active transport.ABC superfamily.ABC1 family.subfamily ABCC transporter
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Anthoceros agrestis | Sc2ySwM_117 | 1 | CH_aag_60 | 3 | 4 | 0.0000216338 |
| Allium sativum | chr6 | 1 | CH_asa_268 | 3 | 3 | 0.00000218298 |
| Aegilops tauschii | 7D | 1 | CH_ata_16 | 8 | 26 | 5.35928e-16 |
| Arabidopsis thaliana | Chr3 | 1 | CH_ath_177 | 3 | 4 | 0.00000224043 |
| Amborella trichopoda | AmTr_v1.0_scaffold00056 | 1 | CH_atr_138 | 3 | 4 | 0.0000108262 |
| Brachypodium distachyon | Bd1 | 1 | CH_bdi_165 | 3 | 4 | 0.0000260015 |
| Brachypodium distachyon | Bd1 | 1 | CH_bdi_270 | 3 | 8 | 0.000363404 |
| Calamus simplicifolius | scaffold38 | 1 | CH_calsi_27 | 4 | 4 | 0.000000000449326 |
| Elaeis guineensis | EG5.1_Chr3 | 1 | CH_egu_84 | 3 | 3 | 0.00000490021 |
| Elaeis guineensis | EG5.1_Chr3 | 1 | CH_egu_85 | 3 | 3 | 0.00000490021 |
| Glycine max | Gm16 | 1 | CH_gma_299 | 3 | 3 | 0.0000197493 |
| Glycine max | Gm02 | 1 | CH_gma_300 | 3 | 3 | 0.0000197493 |
| Glycine max | Gm08 | 1 | CH_gma_408 | 3 | 5 | 0.000197283 |
| Hordeum vulgare | chr3H | 1 | CH_hvu_265 | 3 | 5 | 0.0000380236 |
| Hordeum vulgare | chr7H | 1 | CH_hvu_81 | 5 | 12 | 0.00000000042347 |
| Lolium perenne | Lp_chr2_0 | 1 | CH_lpe_241 | 3 | 5 | 0.000050737 |
| Lolium perenne | Lp_chr3_0 | 1 | CH_lpe_74 | 5 | 14 | 0.00000000157066 |
| Magnolia biondii | Chr07 | 1 | CH_mbi_291 | 3 | 5 | 0.0000240455 |
| Magnolia biondii | Chr04 | 1 | CH_mbi_616 | 3 | 12 | 0.000527968 |
| Marchantia polymorpha | scaffold_32 | 1 | CH_mpo_65 | 3 | 5 | 0.0000831606 |
| Oryza alta | GWHAZTO00000004 | 1 | CH_oal_296 | 3 | 4 | 0.00000798033 |
| Phyllostachys edulis | hic_scaffold_6 | 1 | CH_ped_217 | 3 | 3 | 0.00000572783 |
| Phyllostachys edulis | hic_scaffold_24 | 1 | CH_ped_70 | 5 | 9 | 0.000000000138205 |
| Panicum hallii | Chr07 | 1 | CH_pha_125 | 4 | 7 | 0.000000099717 |
| Populus trichocarpa | scaffold_67 | 1 | CH_ptr_275 | 3 | 3 | 0.0000203464 |
| Populus trichocarpa | Chr03 | 1 | CH_ptr_276 | 3 | 3 | 0.0000203464 |
| Secale cereale | GWHASIY00000004 | 1 | CH_sce_39 | 8 | 23 | 4.90724e-16 |
| Secale cereale | GWHASIY00000005 | 1 | CH_sce_396 | 3 | 3 | 0.0000139768 |
| Sequoiadendron giganteum | chr3 | 1 | CH_sgi_104 | 9 | 21 | 3.68581e-19 |
| Sequoiadendron giganteum | chr3 | 1 | CH_sgi_1349 | 3 | 7 | 0.000616618 |
| Sequoiadendron giganteum | chr5 | 1 | CH_sgi_337 | 5 | 8 | 0.000000000475587 |
| Setaria italica | scaffold_7 | 1 | CH_sit_205 | 5 | 48 | 0.00000222254 |
| Setaria viridis | Chr_07 | 1 | CH_svi_215 | 5 | 59 | 0.00000423445 |
| Triticum aestivum | Chr7A | 1 | CH_tae_130 | 7 | 11 | 0.0000000000000054832 |
| Triticum aestivum | Chr7B | 1 | CH_tae_46 | 11 | 30 | 2.35605e-22 |
| Triticum aestivum | Chr7D | 1 | CH_tae_47 | 11 | 30 | 2.35605e-22 |
| Triticum dicoccoides | 2B | 1 | CH_tdi_381 | 3 | 4 | 0.0000522161 |
| Triticum turgidum | chr7B | 1 | CH_ttu_156 | 6 | 31 | 0.00000000297377 |
| Triticum turgidum | chr2B | 1 | CH_ttu_487 | 3 | 4 | 0.0000722925 |
| Zea mays B73 | 7 | 1 | CH_zma_128 | 3 | 5 | 0.0000178347 |
| Anthoceros agrestis | Sc2ySwM_117 | 2 | CH_aag_60 | 3 | 4 | 0.0000216338 |
| Allium sativum | chr6 | 2 | CH_asa_268 | 3 | 3 | 0.00000218298 |
| Aegilops tauschii | 7D | 2 | CH_ata_16 | 8 | 26 | 5.35928e-16 |
| Arabidopsis thaliana | Chr3 | 2 | CH_ath_177 | 3 | 4 | 0.00000224043 |
| Amborella trichopoda | AmTr_v1.0_scaffold00056 | 2 | CH_atr_138 | 3 | 4 | 0.0000108262 |
| Brachypodium distachyon | Bd1 | 2 | CH_bdi_165 | 3 | 4 | 0.0000260015 |
| Brachypodium distachyon | Bd1 | 2 | CH_bdi_270 | 3 | 8 | 0.000363404 |
| Calamus simplicifolius | scaffold38 | 2 | CH_calsi_27 | 4 | 4 | 0.000000000449326 |
| Elaeis guineensis | EG5.1_Chr3 | 2 | CH_egu_84 | 3 | 3 | 0.00000490021 |
| Elaeis guineensis | EG5.1_Chr3 | 2 | CH_egu_85 | 3 | 3 | 0.00000490021 |
| Glycine max | Gm16 | 2 | CH_gma_299 | 3 | 3 | 0.0000197493 |
| Glycine max | Gm02 | 2 | CH_gma_300 | 3 | 3 | 0.0000197493 |
| Glycine max | Gm08 | 2 | CH_gma_408 | 3 | 5 | 0.000197283 |
| Hordeum vulgare | chr3H | 2 | CH_hvu_265 | 3 | 5 | 0.0000380236 |
| Hordeum vulgare | chr7H | 2 | CH_hvu_81 | 5 | 12 | 0.00000000042347 |
| Lolium perenne | Lp_chr2_0 | 2 | CH_lpe_241 | 3 | 5 | 0.000050737 |
| Lolium perenne | Lp_chr3_0 | 2 | CH_lpe_74 | 5 | 14 | 0.00000000157066 |
| Magnolia biondii | Chr07 | 2 | CH_mbi_291 | 3 | 5 | 0.0000240455 |
| Magnolia biondii | Chr04 | 2 | CH_mbi_616 | 3 | 12 | 0.000527968 |
| Marchantia polymorpha | scaffold_32 | 2 | CH_mpo_65 | 3 | 5 | 0.0000831606 |
| Oryza alta | GWHAZTO00000004 | 2 | CH_oal_296 | 3 | 4 | 0.00000798033 |
| Phyllostachys edulis | hic_scaffold_6 | 2 | CH_ped_217 | 3 | 3 | 0.00000572783 |
| Phyllostachys edulis | hic_scaffold_24 | 2 | CH_ped_70 | 5 | 9 | 0.000000000138205 |
| Panicum hallii | Chr07 | 2 | CH_pha_125 | 4 | 7 | 0.000000099717 |
| Populus trichocarpa | scaffold_67 | 2 | CH_ptr_275 | 3 | 3 | 0.0000203464 |
| Populus trichocarpa | Chr03 | 2 | CH_ptr_276 | 3 | 3 | 0.0000203464 |
| Secale cereale | GWHASIY00000004 | 2 | CH_sce_39 | 8 | 23 | 4.90724e-16 |
| Secale cereale | GWHASIY00000005 | 2 | CH_sce_396 | 3 | 3 | 0.0000139768 |
| Sequoiadendron giganteum | chr3 | 2 | CH_sgi_104 | 9 | 21 | 3.68581e-19 |
| Sequoiadendron giganteum | chr3 | 2 | CH_sgi_1349 | 3 | 7 | 0.000616618 |
| Sequoiadendron giganteum | chr5 | 2 | CH_sgi_337 | 5 | 8 | 0.000000000475587 |
| Setaria italica | scaffold_7 | 2 | CH_sit_205 | 5 | 48 | 0.00000222254 |
| Setaria viridis | Chr_07 | 2 | CH_svi_215 | 5 | 59 | 0.00000423445 |
| Triticum aestivum | Chr7A | 2 | CH_tae_130 | 7 | 11 | 0.0000000000000054832 |
| Triticum aestivum | Chr7B | 2 | CH_tae_46 | 11 | 30 | 2.35605e-22 |
| Triticum aestivum | Chr7D | 2 | CH_tae_47 | 11 | 30 | 2.35605e-22 |
| Triticum dicoccoides | 2B | 2 | CH_tdi_381 | 3 | 4 | 0.0000522161 |
| Triticum turgidum | chr7B | 2 | CH_ttu_156 | 6 | 31 | 0.00000000297377 |
| Triticum turgidum | chr2B | 2 | CH_ttu_487 | 3 | 4 | 0.0000722925 |
| Zea mays B73 | 7 | 2 | CH_zma_128 | 3 | 5 | 0.0000178347 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |