Functional clusters
Information
- Type MapMan
- Description Vesicle trafficking.endocytic trafficking.ESCRT-mediated sorting.ESCRT-regulatory factor (ISTL)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aegilops tauschii | 4D | 1 | CH_ata_129 | 3 | 5 | 0.00000203636 |
| Brachypodium distachyon | Bd1 | 1 | CH_bdi_112 | 3 | 3 | 0.000000684539 |
| Digitaria exilis | Dexi_CM05836_chr09A | 1 | CH_dex_129 | 4 | 4 | 0.00000000586369 |
| Digitaria exilis | Dexi_CM05836_chr09B | 1 | CH_dex_335 | 3 | 3 | 0.0000109655 |
| Hordeum vulgare | chr4H | 1 | CH_hvu_165 | 3 | 3 | 0.000000296471 |
| Miscanthus sinensis | Chr02 | 1 | CH_msi_208 | 3 | 3 | 0.00000126902 |
| Oryza alta | GWHAZTO00000003 | 1 | CH_oal_204 | 3 | 3 | 0.000000590238 |
| Oryza sativa ssp. indica | Chr3 | 1 | CH_osaindica_122 | 3 | 3 | 0.000000336284 |
| Oryza sativa Kitaake | Chr3 | 1 | CH_osak_203 | 3 | 3 | 0.000000570271 |
| Oropetium thomaeum | Chromosome_4 | 1 | CH_oth_110 | 3 | 5 | 0.00000911729 |
| Panicum hallii | Chr09 | 1 | CH_pha_182 | 3 | 4 | 0.00000243097 |
| Populus trichocarpa | Chr03 | 1 | CH_ptr_246 | 3 | 3 | 0.00000340777 |
| Setaria italica | scaffold_9 | 1 | CH_sit_103 | 4 | 6 | 0.00000000628937 |
| Setaria viridis | Chr_09 | 1 | CH_svi_122 | 4 | 9 | 0.0000000265574 |
| Triticum aestivum | Chr4B | 1 | CH_tae_732 | 3 | 3 | 0.00000260356 |
| Triticum aestivum | Chr4A | 1 | CH_tae_733 | 3 | 3 | 0.00000260356 |
| Triticum aestivum | Chr4D | 1 | CH_tae_942 | 3 | 5 | 0.0000260245 |
| Triticum dicoccoides | 4B | 1 | CH_tdi_239 | 3 | 3 | 0.00000128085 |
| Triticum dicoccoides | 4A | 1 | CH_tdi_285 | 3 | 4 | 0.00000512239 |
| Triticum turgidum | chr4A | 1 | CH_ttu_344 | 3 | 3 | 0.00000296554 |
| Triticum turgidum | chr4B | 1 | CH_ttu_345 | 3 | 3 | 0.00000296554 |
| Zea mays B104 | scaffold9.2393 | 1 | CH_zma-b104_4 | 4 | 4 | 0.00000000127465 |
| Zea mays B73 | 9 | 1 | CH_zma_24 | 5 | 5 | 0.00000000000172523 |
| Zea mays B73 | 1 | 1 | CH_zma_48 | 4 | 4 | 0.00000000355143 |
| Aegilops tauschii | 4D | 2 | CH_ata_129 | 3 | 5 | 0.00000203636 |
| Brachypodium distachyon | Bd1 | 2 | CH_bdi_112 | 3 | 3 | 0.000000684539 |
| Digitaria exilis | Dexi_CM05836_chr09A | 2 | CH_dex_129 | 4 | 4 | 0.00000000586369 |
| Digitaria exilis | Dexi_CM05836_chr09B | 2 | CH_dex_335 | 3 | 3 | 0.0000109655 |
| Hordeum vulgare | chr4H | 2 | CH_hvu_165 | 3 | 3 | 0.000000296471 |
| Miscanthus sinensis | Chr02 | 2 | CH_msi_208 | 3 | 3 | 0.00000126902 |
| Oryza alta | GWHAZTO00000003 | 2 | CH_oal_204 | 3 | 3 | 0.000000590238 |
| Oryza sativa ssp. indica | Chr3 | 2 | CH_osaindica_122 | 3 | 3 | 0.000000336284 |
| Oryza sativa Kitaake | Chr3 | 2 | CH_osak_203 | 3 | 3 | 0.000000570271 |
| Oropetium thomaeum | Chromosome_4 | 2 | CH_oth_110 | 3 | 5 | 0.00000911729 |
| Panicum hallii | Chr09 | 2 | CH_pha_182 | 3 | 4 | 0.00000243097 |
| Populus trichocarpa | Chr03 | 2 | CH_ptr_246 | 3 | 3 | 0.00000340777 |
| Setaria italica | scaffold_9 | 2 | CH_sit_103 | 4 | 6 | 0.00000000628937 |
| Setaria viridis | Chr_09 | 2 | CH_svi_122 | 4 | 9 | 0.0000000265574 |
| Triticum aestivum | Chr4B | 2 | CH_tae_732 | 3 | 3 | 0.00000260356 |
| Triticum aestivum | Chr4A | 2 | CH_tae_733 | 3 | 3 | 0.00000260356 |
| Triticum aestivum | Chr4D | 2 | CH_tae_942 | 3 | 5 | 0.0000260245 |
| Triticum dicoccoides | 4B | 2 | CH_tdi_239 | 3 | 3 | 0.00000128085 |
| Triticum dicoccoides | 4A | 2 | CH_tdi_285 | 3 | 4 | 0.00000512239 |
| Triticum turgidum | chr4A | 2 | CH_ttu_344 | 3 | 3 | 0.00000296554 |
| Triticum turgidum | chr4B | 2 | CH_ttu_345 | 3 | 3 | 0.00000296554 |
| Zea mays B104 | scaffold9.2393 | 2 | CH_zma-b104_4 | 4 | 4 | 0.00000000127465 |
| Zea mays B73 | 9 | 2 | CH_zma_24 | 5 | 5 | 0.00000000000172523 |
| Zea mays B73 | 1 | 2 | CH_zma_48 | 4 | 4 | 0.00000000355143 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |