Functional clusters
Information
- Type MapMan
- Description Cell wall organisation.cutin and suberin.cuticular lipid formation.acyl-reduction pathway.fatty acyl CoA reductase
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Allium sativum | chr5 | 1 | CH_asa_208 | 3 | 9 | 0.000000189214 |
| Brachypodium distachyon | Bd4 | 1 | CH_bdi_320 | 2 | 2 | 0.000616675 |
| Cenchrus purpureus | GWHAORA00000008 | 1 | CH_cpu_362 | 3 | 3 | 0.000000974792 |
| Cenchrus purpureus | GWHAORA00000003 | 1 | CH_cpu_363 | 3 | 3 | 0.000000974792 |
| Eragrostis curvula | Contig50 | 1 | CH_ecu_268 | 4 | 17 | 0.0000000872726 |
| Glycine max | Gm11 | 1 | CH_gma_67 | 4 | 4 | 0.0000000000206703 |
| Musa acuminata | chr09 | 1 | CH_mac_23 | 4 | 5 | 0.0000000000137575 |
| Miscanthus sinensis | Chr13 | 1 | CH_msi_281 | 3 | 10 | 0.0000156664 |
| Miscanthus sinensis | Chr07 | 1 | CH_msi_282 | 3 | 10 | 0.0000156664 |
| Oryza brachyantha | 8 | 1 | CH_obr_289 | 2 | 4 | 0.000597336 |
| Panicum hallii | Chr06 | 1 | CH_pha_115 | 3 | 3 | 0.0000000506545 |
| Populus trichocarpa | Chr09 | 1 | CH_ptr_175 | 3 | 3 | 0.000000100229 |
| Sorghum bicolor | Chr07 | 1 | CH_sbi_90 | 4 | 9 | 0.00000000114463 |
| Sequoiadendron giganteum | chr1 | 1 | CH_sgi_75 | 8 | 15 | 2.17741e-22 |
| Setaria italica | scaffold_6 | 1 | CH_sit_462 | 2 | 2 | 0.00087065 |
| Solanum lycopersicum | SL4.0ch11 | 1 | CH_sly_153 | 3 | 3 | 0.000000103353 |
| Saccharum spontaneum | Chr6A | 1 | CH_ssp_391 | 3 | 4 | 0.00000191246 |
| Setaria viridis | Chr_06 | 1 | CH_svi_146 | 3 | 3 | 0.00000014294 |
| Triticum aestivum | Chr4B | 1 | CH_tae_1110 | 3 | 8 | 0.000160203 |
| Zoysia japonica ssp. nagirizaki | Zjn_sc00078.1 | 1 | CH_zjn_138 | 2 | 2 | 0.000110986 |
| Allium sativum | chr5 | 2 | CH_asa_208 | 3 | 9 | 0.000000189214 |
| Brachypodium distachyon | Bd4 | 2 | CH_bdi_320 | 2 | 2 | 0.000616675 |
| Cenchrus purpureus | GWHAORA00000008 | 2 | CH_cpu_362 | 3 | 3 | 0.000000974792 |
| Cenchrus purpureus | GWHAORA00000003 | 2 | CH_cpu_363 | 3 | 3 | 0.000000974792 |
| Eragrostis curvula | Contig50 | 2 | CH_ecu_268 | 4 | 17 | 0.0000000872726 |
| Glycine max | Gm11 | 2 | CH_gma_67 | 4 | 4 | 0.0000000000206703 |
| Musa acuminata | chr09 | 2 | CH_mac_23 | 4 | 5 | 0.0000000000137575 |
| Miscanthus sinensis | Chr13 | 2 | CH_msi_281 | 3 | 10 | 0.0000156664 |
| Miscanthus sinensis | Chr07 | 2 | CH_msi_282 | 3 | 10 | 0.0000156664 |
| Oryza brachyantha | 8 | 2 | CH_obr_289 | 2 | 4 | 0.000597336 |
| Panicum hallii | Chr06 | 2 | CH_pha_115 | 3 | 3 | 0.0000000506545 |
| Populus trichocarpa | Chr09 | 2 | CH_ptr_175 | 3 | 3 | 0.000000100229 |
| Sorghum bicolor | Chr07 | 2 | CH_sbi_90 | 4 | 9 | 0.00000000114463 |
| Sequoiadendron giganteum | chr1 | 2 | CH_sgi_75 | 8 | 15 | 2.17741e-22 |
| Setaria italica | scaffold_6 | 2 | CH_sit_462 | 2 | 2 | 0.00087065 |
| Solanum lycopersicum | SL4.0ch11 | 2 | CH_sly_153 | 3 | 3 | 0.000000103353 |
| Saccharum spontaneum | Chr6A | 2 | CH_ssp_391 | 3 | 4 | 0.00000191246 |
| Setaria viridis | Chr_06 | 2 | CH_svi_146 | 3 | 3 | 0.00000014294 |
| Triticum aestivum | Chr4B | 2 | CH_tae_1110 | 3 | 8 | 0.000160203 |
| Zoysia japonica ssp. nagirizaki | Zjn_sc00078.1 | 2 | CH_zjn_138 | 2 | 2 | 0.000110986 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |