Functional clusters
Information
- Type MapMan
- Description Cell wall organisation.lignin.monolignol glycosylation and deglycosylation.coniferin beta-glucosidase
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Ananas comosus | LG03 | 1 | CH_aco_78 | 2 | 2 | 0.0000829463 |
| Aegilops tauschii | 2D | 1 | CH_ata_241 | 2 | 3 | 0.000147725 |
| Arabidopsis thaliana | Chr1 | 1 | CH_ath_430 | 2 | 5 | 0.000859414 |
| Brachypodium distachyon | Bd5 | 1 | CH_bdi_199 | 2 | 2 | 0.0000616675 |
| Cenchrus purpureus | GWHAORA00000005 | 1 | CH_cpu_135 | 5 | 23 | 0.0000000000580043 |
| Cenchrus purpureus | GWHAORA00000014 | 1 | CH_cpu_50 | 5 | 5 | 0.00000000000000172628 |
| Dioscorea dumetorum | contig119 | 1 | CH_ddu_228 | 2 | 2 | 0.000207268 |
| Eragrostis curvula | Contig30 | 1 | CH_ecu_33 | 7 | 21 | 3.11103e-20 |
| Glycine max | Gm12 | 1 | CH_gma_615 | 2 | 2 | 0.00079707 |
| Glycine max | Gm07 | 1 | CH_gma_616 | 2 | 2 | 0.00079707 |
| Hordeum vulgare | chr2H | 1 | CH_hvu_112 | 3 | 4 | 0.00000000988217 |
| Lolium perenne | Lp_chr4_0 | 1 | CH_lpe_379 | 2 | 2 | 0.000482137 |
| Lolium perenne | Lp_chr2_0 | 1 | CH_lpe_39 | 4 | 5 | 0.00000000000747175 |
| Miscanthus sinensis | Chr11 | 1 | CH_msi_29 | 5 | 8 | 0.00000000000000948018 |
| Miscanthus sinensis | Chr12 | 1 | CH_msi_608 | 2 | 2 | 0.000676176 |
| Oryza alta | GWHAZTO00000016 | 1 | CH_oal_104 | 3 | 3 | 0.00000000609121 |
| Oryza alta | GWHAZTO00000004 | 1 | CH_oal_592 | 2 | 2 | 0.000201513 |
| Oryza brachyantha | 4 | 1 | CH_obr_56 | 3 | 3 | 0.00000000535231 |
| Oryza sativa ssp. indica | Chr4 | 1 | CH_osaindica_90 | 3 | 5 | 0.0000000400317 |
| Oryza sativa Kitaake | Chr4 | 1 | CH_osak_69 | 4 | 5 | 0.00000000000267492 |
| Phyllostachys edulis | hic_scaffold_24 | 1 | CH_ped_391 | 2 | 2 | 0.000244474 |
| Panicum hallii | Chr07 | 1 | CH_pha_24 | 5 | 9 | 0.0000000000000107767 |
| Populus trichocarpa | Chr04 | 1 | CH_ptr_57 | 5 | 7 | 0.0000000000000105481 |
| Sorghum bicolor | Chr06 | 1 | CH_sbi_4 | 10 | 12 | 3.85565e-33 |
| Secale cereale | GWHASIY00000002 | 1 | CH_sce_166 | 5 | 43 | 0.00000000778355 |
| Sequoiadendron giganteum | chr10 | 1 | CH_sgi_322 | 4 | 5 | 0.00000000021849 |
| Setaria italica | scaffold_7 | 1 | CH_sit_25 | 5 | 5 | 8.51426e-17 |
| Solanum lycopersicum | SL4.0ch02 | 1 | CH_sly_157 | 3 | 3 | 0.000000103353 |
| Saccharum spontaneum | Chr5C | 1 | CH_ssp_345 | 3 | 4 | 0.000000976744 |
| Saccharum spontaneum | Chr5B | 1 | CH_ssp_498 | 3 | 7 | 0.00000854391 |
| Saccharum spontaneum | Chr5A | 1 | CH_ssp_68 | 5 | 15 | 0.00000000000938499 |
| Setaria viridis | Chr_07 | 1 | CH_svi_27 | 5 | 7 | 0.00000000000000116759 |
| Triticum aestivum | Chr2A | 1 | CH_tae_581 | 3 | 4 | 0.000000251943 |
| Triticum aestivum | Chr2D | 1 | CH_tae_582 | 3 | 4 | 0.000000251943 |
| Triticum dicoccoides | 2A | 1 | CH_tdi_164 | 3 | 3 | 0.0000000462638 |
| Triticum dicoccoides | 2B | 1 | CH_tdi_585 | 2 | 2 | 0.000623386 |
| Triticum turgidum | chr2A | 1 | CH_ttu_264 | 3 | 5 | 0.000000512751 |
| Triticum turgidum | chr2B | 1 | CH_ttu_708 | 2 | 2 | 0.000656322 |
| Vanilla planifolia | CM028161.1 | 1 | CH_vpl_269 | 2 | 2 | 0.000221664 |
| Zea mays B73 | 2 | 1 | CH_zma_293 | 2 | 4 | 0.000920285 |
| Ananas comosus | LG03 | 2 | CH_aco_78 | 2 | 2 | 0.0000829463 |
| Aegilops tauschii | 2D | 2 | CH_ata_241 | 2 | 3 | 0.000147725 |
| Arabidopsis thaliana | Chr1 | 2 | CH_ath_430 | 2 | 5 | 0.000859414 |
| Brachypodium distachyon | Bd5 | 2 | CH_bdi_199 | 2 | 2 | 0.0000616675 |
| Cenchrus purpureus | GWHAORA00000005 | 2 | CH_cpu_135 | 5 | 23 | 0.0000000000580043 |
| Cenchrus purpureus | GWHAORA00000014 | 2 | CH_cpu_50 | 5 | 5 | 0.00000000000000172628 |
| Dioscorea dumetorum | contig119 | 2 | CH_ddu_228 | 2 | 2 | 0.000207268 |
| Eragrostis curvula | Contig30 | 2 | CH_ecu_33 | 7 | 21 | 3.11103e-20 |
| Glycine max | Gm12 | 2 | CH_gma_615 | 2 | 2 | 0.00079707 |
| Glycine max | Gm07 | 2 | CH_gma_616 | 2 | 2 | 0.00079707 |
| Hordeum vulgare | chr2H | 2 | CH_hvu_112 | 3 | 4 | 0.00000000988217 |
| Lolium perenne | Lp_chr4_0 | 2 | CH_lpe_379 | 2 | 2 | 0.000482137 |
| Lolium perenne | Lp_chr2_0 | 2 | CH_lpe_39 | 4 | 5 | 0.00000000000747175 |
| Miscanthus sinensis | Chr11 | 2 | CH_msi_29 | 5 | 8 | 0.00000000000000948018 |
| Miscanthus sinensis | Chr12 | 2 | CH_msi_608 | 2 | 2 | 0.000676176 |
| Oryza alta | GWHAZTO00000016 | 2 | CH_oal_104 | 3 | 3 | 0.00000000609121 |
| Oryza alta | GWHAZTO00000004 | 2 | CH_oal_592 | 2 | 2 | 0.000201513 |
| Oryza brachyantha | 4 | 2 | CH_obr_56 | 3 | 3 | 0.00000000535231 |
| Oryza sativa ssp. indica | Chr4 | 2 | CH_osaindica_90 | 3 | 5 | 0.0000000400317 |
| Oryza sativa Kitaake | Chr4 | 2 | CH_osak_69 | 4 | 5 | 0.00000000000267492 |
| Phyllostachys edulis | hic_scaffold_24 | 2 | CH_ped_391 | 2 | 2 | 0.000244474 |
| Panicum hallii | Chr07 | 2 | CH_pha_24 | 5 | 9 | 0.0000000000000107767 |
| Populus trichocarpa | Chr04 | 2 | CH_ptr_57 | 5 | 7 | 0.0000000000000105481 |
| Sorghum bicolor | Chr06 | 2 | CH_sbi_4 | 10 | 12 | 3.85565e-33 |
| Secale cereale | GWHASIY00000002 | 2 | CH_sce_166 | 5 | 43 | 0.00000000778355 |
| Sequoiadendron giganteum | chr10 | 2 | CH_sgi_322 | 4 | 5 | 0.00000000021849 |
| Setaria italica | scaffold_7 | 2 | CH_sit_25 | 5 | 5 | 8.51426e-17 |
| Solanum lycopersicum | SL4.0ch02 | 2 | CH_sly_157 | 3 | 3 | 0.000000103353 |
| Saccharum spontaneum | Chr5C | 2 | CH_ssp_345 | 3 | 4 | 0.000000976744 |
| Saccharum spontaneum | Chr5B | 2 | CH_ssp_498 | 3 | 7 | 0.00000854391 |
| Saccharum spontaneum | Chr5A | 2 | CH_ssp_68 | 5 | 15 | 0.00000000000938499 |
| Setaria viridis | Chr_07 | 2 | CH_svi_27 | 5 | 7 | 0.00000000000000116759 |
| Triticum aestivum | Chr2A | 2 | CH_tae_581 | 3 | 4 | 0.000000251943 |
| Triticum aestivum | Chr2D | 2 | CH_tae_582 | 3 | 4 | 0.000000251943 |
| Triticum dicoccoides | 2A | 2 | CH_tdi_164 | 3 | 3 | 0.0000000462638 |
| Triticum dicoccoides | 2B | 2 | CH_tdi_585 | 2 | 2 | 0.000623386 |
| Triticum turgidum | chr2A | 2 | CH_ttu_264 | 3 | 5 | 0.000000512751 |
| Triticum turgidum | chr2B | 2 | CH_ttu_708 | 2 | 2 | 0.000656322 |
| Vanilla planifolia | CM028161.1 | 2 | CH_vpl_269 | 2 | 2 | 0.000221664 |
| Zea mays B73 | 2 | 2 | CH_zma_293 | 2 | 4 | 0.000920285 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |