Functional clusters

Information

  • Type MapMan
  • Description Cell wall organisation.lignin.monolignol conjugation and polymerization.lignin peroxidase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Ananas comosus LG10 1 CH_aco_143 2 2 0.000497678
Allium sativum chr8 1 CH_asa_252 3 8 0.00000126127
Aegilops tauschii 3D 1 CH_ata_342 2 4 0.000886277
Brachypodium distachyon Bd2 1 CH_bdi_34 4 4 0.0000000000105541
Ceratophyllum demersum 3 1 CH_cde_281 2 2 0.000789796
Cenchrus purpureus GWHAORA00000007 1 CH_cpu_119 4 4 0.0000000000186131
Cenchrus purpureus GWHAORA00000009 1 CH_cpu_352 3 4 0.000000688022
Digitaria exilis Dexi_CM05836_chr05B 1 CH_dex_212 3 4 0.00000023454
Glycine max Gm16 1 CH_gma_614 2 2 0.00079707
Hordeum vulgare chr3H 1 CH_hvu_31 5 7 0.00000000000000897238
Lolium perenne Lp_chr3_0 1 CH_lpe_414 2 2 0.000674992
Lolium perenne Lp_chr3_0 1 CH_lpe_87 4 16 0.00000000634211
Magnolia biondii Chr16 1 CH_mbi_563 2 3 0.000437077
Miscanthus sinensis Chr05 1 CH_msi_607 2 2 0.000676176
Oryza alta GWHAZTO00000013 1 CH_oal_731 2 2 0.000564237
Oryza sativa ssp. indica Chr1 1 CH_osaindica_410 2 3 0.00092984
Oryza sativa Kitaake Chr1 1 CH_osak_415 2 2 0.000337714
Oryza sativa ssp. japonica chr01 1 CH_osa_325 2 2 0.000316874
Oropetium thomaeum Chromosome_3 1 CH_oth_65 3 3 0.0000000760112
Phyllostachys edulis hic_scaffold_6 1 CH_ped_133 3 3 0.0000000871627
Panicum hallii Chr05 1 CH_pha_55 4 5 0.0000000000441528
Sorghum bicolor Chr03 1 CH_sbi_125 3 3 0.0000000516309
Secale cereale GWHASIY00000003 1 CH_sce_94 4 4 0.0000000000356769
Setaria italica scaffold_5 1 CH_sit_58 4 4 0.00000000000880051
Solanum lycopersicum SL4.0ch02 1 CH_sly_178 3 3 0.000000289388
Saccharum spontaneum Chr3D 1 CH_ssp_1134 2 2 0.000501038
Setaria viridis Chr_05 1 CH_svi_65 4 5 0.000000000031964
Triticum aestivum Chr3A 1 CH_tae_140 5 5 0.00000000000001424
Triticum aestivum Chr3B 1 CH_tae_141 5 5 0.00000000000001424
Triticum aestivum Chr3D 1 CH_tae_280 4 4 0.000000000095151
Triticum turgidum chr3B 1 CH_ttu_183 3 3 0.0000000146519
Triticum turgidum chr3A 1 CH_ttu_742 2 3 0.000937559
Zea mays B73 8 1 CH_zma_283 2 2 0.000766969
Zostera marina Chr04 1 CH_zosmarina_211 2 2 0.000579346
Ananas comosus LG10 2 CH_aco_143 2 2 0.000497678
Allium sativum chr8 2 CH_asa_252 3 8 0.00000126127
Aegilops tauschii 3D 2 CH_ata_342 2 4 0.000886277
Brachypodium distachyon Bd2 2 CH_bdi_34 4 4 0.0000000000105541
Ceratophyllum demersum 3 2 CH_cde_281 2 2 0.000789796
Cenchrus purpureus GWHAORA00000007 2 CH_cpu_119 4 4 0.0000000000186131
Cenchrus purpureus GWHAORA00000009 2 CH_cpu_352 3 4 0.000000688022
Digitaria exilis Dexi_CM05836_chr05B 2 CH_dex_212 3 4 0.00000023454
Glycine max Gm16 2 CH_gma_614 2 2 0.00079707
Hordeum vulgare chr3H 2 CH_hvu_31 5 7 0.00000000000000897238
Lolium perenne Lp_chr3_0 2 CH_lpe_414 2 2 0.000674992
Lolium perenne Lp_chr3_0 2 CH_lpe_87 4 16 0.00000000634211
Magnolia biondii Chr16 2 CH_mbi_563 2 3 0.000437077
Miscanthus sinensis Chr05 2 CH_msi_607 2 2 0.000676176
Oryza alta GWHAZTO00000013 2 CH_oal_731 2 2 0.000564237
Oryza sativa ssp. indica Chr1 2 CH_osaindica_410 2 3 0.00092984
Oryza sativa Kitaake Chr1 2 CH_osak_415 2 2 0.000337714
Oryza sativa ssp. japonica chr01 2 CH_osa_325 2 2 0.000316874
Oropetium thomaeum Chromosome_3 2 CH_oth_65 3 3 0.0000000760112
Phyllostachys edulis hic_scaffold_6 2 CH_ped_133 3 3 0.0000000871627
Panicum hallii Chr05 2 CH_pha_55 4 5 0.0000000000441528
Sorghum bicolor Chr03 2 CH_sbi_125 3 3 0.0000000516309
Secale cereale GWHASIY00000003 2 CH_sce_94 4 4 0.0000000000356769
Setaria italica scaffold_5 2 CH_sit_58 4 4 0.00000000000880051
Solanum lycopersicum SL4.0ch02 2 CH_sly_178 3 3 0.000000289388
Saccharum spontaneum Chr3D 2 CH_ssp_1134 2 2 0.000501038
Setaria viridis Chr_05 2 CH_svi_65 4 5 0.000000000031964
Triticum aestivum Chr3A 2 CH_tae_140 5 5 0.00000000000001424
Triticum aestivum Chr3B 2 CH_tae_141 5 5 0.00000000000001424
Triticum aestivum Chr3D 2 CH_tae_280 4 4 0.000000000095151
Triticum turgidum chr3B 2 CH_ttu_183 3 3 0.0000000146519
Triticum turgidum chr3A 2 CH_ttu_742 2 3 0.000937559
Zea mays B73 8 2 CH_zma_283 2 2 0.000766969
Zostera marina Chr04 2 CH_zosmarina_211 2 2 0.000579346

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001