Functional clusters
Information
- Type MapMan
- Description Cell wall organisation.lignin.monolignol conjugation and polymerization.lignin laccase
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Ananas comosus | LG23 | 1 | CH_aco_162 | 2 | 2 | 0.000829463 |
| Allium sativum | chr5 | 1 | CH_asa_581 | 3 | 39 | 0.000205526 |
| Aegilops tauschii | 3D | 1 | CH_ata_175 | 3 | 8 | 0.0000170978 |
| Brachypodium distachyon | Bd2 | 1 | CH_bdi_160 | 3 | 7 | 0.0000167598 |
| Calamus simplicifolius | scaffold245 | 1 | CH_calsi_180 | 2 | 2 | 0.0000671321 |
| Dioscorea dumetorum | contig857 | 1 | CH_ddu_123 | 3 | 6 | 0.00000501011 |
| Eragrostis curvula | 7 | 1 | CH_ecu_768 | 2 | 4 | 0.000697859 |
| Elaeis guineensis | EG5.1_Chr5 | 1 | CH_egu_104 | 3 | 6 | 0.0000150674 |
| Glycine max | Gm18 | 1 | CH_gma_226 | 5 | 62 | 0.00000153918 |
| Hordeum vulgare | chr3H | 1 | CH_hvu_262 | 3 | 10 | 0.000035545 |
| Lolium perenne | Lp_chr3_0 | 1 | CH_lpe_187 | 3 | 10 | 0.0000104086 |
| Magnolia biondii | Chr14 | 1 | CH_mbi_84 | 5 | 22 | 0.000000000276343 |
| Miscanthus sinensis | Chr05 | 1 | CH_msi_240 | 3 | 6 | 0.00000373129 |
| Oryza alta | GWHAZTO00000005 | 1 | CH_oal_272 | 3 | 7 | 0.00000351668 |
| Oryza sativa ssp. indica | Chr5 | 1 | CH_osaindica_147 | 3 | 4 | 0.000000896646 |
| Oryza sativa ssp. indica | Chr1 | 1 | CH_osaindica_196 | 3 | 9 | 0.000018818 |
| Oryza sativa Kitaake | Chr5 | 1 | CH_osak_208 | 3 | 4 | 0.000000665241 |
| Oryza sativa ssp. japonica | chr05 | 1 | CH_osa_125 | 3 | 4 | 0.000000334676 |
| Oryza sativa ssp. japonica | chr01 | 1 | CH_osa_389 | 2 | 2 | 0.000792184 |
| Oropetium thomaeum | Chromosome_3 | 1 | CH_oth_105 | 3 | 8 | 0.00000850833 |
| Phyllostachys edulis | hic_scaffold_14 | 1 | CH_ped_214 | 3 | 5 | 0.00000547707 |
| Panicum hallii | Chr05 | 1 | CH_pha_204 | 3 | 9 | 0.00000850513 |
| Populus trichocarpa | Chr06 | 1 | CH_ptr_258 | 3 | 3 | 0.0000066652 |
| Sorghum bicolor | Chr03 | 1 | CH_sbi_223 | 3 | 8 | 0.00000577991 |
| Secale cereale | GWHASIY00000003 | 1 | CH_sce_415 | 3 | 8 | 0.0000208804 |
| Sequoiadendron giganteum | chr2 | 1 | CH_sgi_283 | 6 | 20 | 0.0000000000240313 |
| Sequoiadendron giganteum | chr2 | 1 | CH_sgi_537 | 6 | 77 | 0.000000143852 |
| Sequoiadendron giganteum | chr6 | 1 | CH_sgi_657 | 3 | 5 | 0.00000630447 |
| Setaria italica | scaffold_5 | 1 | CH_sit_217 | 3 | 6 | 0.00000353635 |
| Solanum lycopersicum | SL4.0ch09 | 1 | CH_sly_280 | 3 | 8 | 0.0000346947 |
| Setaria viridis | Chr_05 | 1 | CH_svi_209 | 3 | 6 | 0.0000028579 |
| Triticum aestivum | Chr3A | 1 | CH_tae_1032 | 3 | 7 | 0.0000910471 |
| Triticum aestivum | Chr3B | 1 | CH_tae_1033 | 3 | 7 | 0.0000910471 |
| Triticum aestivum | Chr3D | 1 | CH_tae_1098 | 3 | 8 | 0.000145644 |
| Triticum dicoccoides | 3A | 1 | CH_tdi_341 | 3 | 7 | 0.0000210375 |
| Zoysia japonica ssp. nagirizaki | Zjn_sc00040.1 | 1 | CH_zjn_59 | 3 | 6 | 0.00000229877 |
| Zea mays B73 | 3 | 1 | CH_zma_83 | 3 | 5 | 0.000000392121 |
| Ananas comosus | LG23 | 2 | CH_aco_162 | 2 | 2 | 0.000829463 |
| Allium sativum | chr5 | 2 | CH_asa_581 | 3 | 39 | 0.000205526 |
| Aegilops tauschii | 3D | 2 | CH_ata_175 | 3 | 8 | 0.0000170978 |
| Brachypodium distachyon | Bd2 | 2 | CH_bdi_160 | 3 | 7 | 0.0000167598 |
| Calamus simplicifolius | scaffold245 | 2 | CH_calsi_180 | 2 | 2 | 0.0000671321 |
| Dioscorea dumetorum | contig857 | 2 | CH_ddu_123 | 3 | 6 | 0.00000501011 |
| Eragrostis curvula | 7 | 2 | CH_ecu_768 | 2 | 4 | 0.000697859 |
| Elaeis guineensis | EG5.1_Chr5 | 2 | CH_egu_104 | 3 | 6 | 0.0000150674 |
| Glycine max | Gm18 | 2 | CH_gma_226 | 5 | 62 | 0.00000153918 |
| Hordeum vulgare | chr3H | 2 | CH_hvu_262 | 3 | 10 | 0.000035545 |
| Lolium perenne | Lp_chr3_0 | 2 | CH_lpe_187 | 3 | 10 | 0.0000104086 |
| Magnolia biondii | Chr14 | 2 | CH_mbi_84 | 5 | 22 | 0.000000000276343 |
| Miscanthus sinensis | Chr05 | 2 | CH_msi_240 | 3 | 6 | 0.00000373129 |
| Oryza alta | GWHAZTO00000005 | 2 | CH_oal_272 | 3 | 7 | 0.00000351668 |
| Oryza sativa ssp. indica | Chr5 | 2 | CH_osaindica_147 | 3 | 4 | 0.000000896646 |
| Oryza sativa ssp. indica | Chr1 | 2 | CH_osaindica_196 | 3 | 9 | 0.000018818 |
| Oryza sativa Kitaake | Chr5 | 2 | CH_osak_208 | 3 | 4 | 0.000000665241 |
| Oryza sativa ssp. japonica | chr05 | 2 | CH_osa_125 | 3 | 4 | 0.000000334676 |
| Oryza sativa ssp. japonica | chr01 | 2 | CH_osa_389 | 2 | 2 | 0.000792184 |
| Oropetium thomaeum | Chromosome_3 | 2 | CH_oth_105 | 3 | 8 | 0.00000850833 |
| Phyllostachys edulis | hic_scaffold_14 | 2 | CH_ped_214 | 3 | 5 | 0.00000547707 |
| Panicum hallii | Chr05 | 2 | CH_pha_204 | 3 | 9 | 0.00000850513 |
| Populus trichocarpa | Chr06 | 2 | CH_ptr_258 | 3 | 3 | 0.0000066652 |
| Sorghum bicolor | Chr03 | 2 | CH_sbi_223 | 3 | 8 | 0.00000577991 |
| Secale cereale | GWHASIY00000003 | 2 | CH_sce_415 | 3 | 8 | 0.0000208804 |
| Sequoiadendron giganteum | chr2 | 2 | CH_sgi_283 | 6 | 20 | 0.0000000000240313 |
| Sequoiadendron giganteum | chr2 | 2 | CH_sgi_537 | 6 | 77 | 0.000000143852 |
| Sequoiadendron giganteum | chr6 | 2 | CH_sgi_657 | 3 | 5 | 0.00000630447 |
| Setaria italica | scaffold_5 | 2 | CH_sit_217 | 3 | 6 | 0.00000353635 |
| Solanum lycopersicum | SL4.0ch09 | 2 | CH_sly_280 | 3 | 8 | 0.0000346947 |
| Setaria viridis | Chr_05 | 2 | CH_svi_209 | 3 | 6 | 0.0000028579 |
| Triticum aestivum | Chr3A | 2 | CH_tae_1032 | 3 | 7 | 0.0000910471 |
| Triticum aestivum | Chr3B | 2 | CH_tae_1033 | 3 | 7 | 0.0000910471 |
| Triticum aestivum | Chr3D | 2 | CH_tae_1098 | 3 | 8 | 0.000145644 |
| Triticum dicoccoides | 3A | 2 | CH_tdi_341 | 3 | 7 | 0.0000210375 |
| Zoysia japonica ssp. nagirizaki | Zjn_sc00040.1 | 2 | CH_zjn_59 | 3 | 6 | 0.00000229877 |
| Zea mays B73 | 3 | 2 | CH_zma_83 | 3 | 5 | 0.000000392121 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |