Functional clusters
Information
- Type MapMan
- Description Cell wall organisation.lignin.monolignol biosynthesis.cinnamoyl-CoA reductase (CCR)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Brachypodium distachyon | Bd3 | 1 | CH_bdi_103 | 3 | 3 | 0.000000319452 |
| Cenchrus purpureus | GWHAORA00000003 | 1 | CH_cpu_547 | 3 | 6 | 0.0000381059 |
| Cenchrus purpureus | GWHAORA00000005 | 1 | CH_cpu_704 | 4 | 57 | 0.00020705 |
| Eragrostis curvula | Contig4 | 1 | CH_ecu_195 | 5 | 32 | 0.00000000437568 |
| Hordeum vulgare | chr5H | 1 | CH_hvu_114 | 4 | 8 | 0.0000000100303 |
| Hordeum vulgare | chr6H | 1 | CH_hvu_251 | 3 | 7 | 0.0000247136 |
| Lolium perenne | Lp_chr6_0 | 1 | CH_lpe_25 | 6 | 17 | 0.000000000000016376 |
| Magnolia biondii | Chr04 | 1 | CH_mbi_665 | 2 | 4 | 0.000874119 |
| Oryza brachyantha | 2 | 1 | CH_obr_147 | 3 | 7 | 0.0000224629 |
| Oryza sativa ssp. indica | Chr2 | 1 | CH_osaindica_168 | 4 | 23 | 0.00000365043 |
| Oryza sativa ssp. indica | Chr1 | 1 | CH_osaindica_178 | 3 | 4 | 0.00000582752 |
| Oryza sativa Kitaake | Chr2 | 1 | CH_osak_115 | 4 | 5 | 0.00000000191218 |
| Oryza sativa ssp. japonica | chr02 | 1 | CH_osa_148 | 4 | 27 | 0.00000254923 |
| Populus trichocarpa | Chr01 | 1 | CH_ptr_40 | 6 | 11 | 4.69435e-17 |
| Sorghum bicolor | Chr04 | 1 | CH_sbi_442 | 2 | 2 | 0.000880023 |
| Secale cereale | GWHASIY00000006 | 1 | CH_sce_170 | 4 | 6 | 0.0000000101032 |
| Sequoiadendron giganteum | chr1 | 1 | CH_sgi_209 | 6 | 16 | 0.000000000000246953 |
| Sequoiadendron giganteum | chr3 | 1 | CH_sgi_87 | 9 | 31 | 4.52415e-21 |
| Setaria italica | scaffold_1 | 1 | CH_sit_169 | 3 | 3 | 0.00000042451 |
| Saccharum spontaneum | Chr4C | 1 | CH_ssp_103 | 4 | 4 | 0.00000000036081 |
| Setaria viridis | Chr_01 | 1 | CH_svi_169 | 3 | 3 | 0.000000490079 |
| Triticum aestivum | Chr6A | 1 | CH_tae_1295 | 3 | 10 | 0.000448987 |
| Triticum aestivum | Chr6D | 1 | CH_tae_480 | 4 | 7 | 0.0000000404591 |
| Triticum aestivum | Chr6B | 1 | CH_tae_577 | 4 | 10 | 0.000000242573 |
| Triticum turgidum | chr6A | 1 | CH_ttu_529 | 3 | 9 | 0.000140126 |
| Triticum turgidum | chr6B | 1 | CH_ttu_573 | 3 | 10 | 0.000200136 |
| Brachypodium distachyon | Bd3 | 2 | CH_bdi_103 | 3 | 3 | 0.000000319452 |
| Cenchrus purpureus | GWHAORA00000003 | 2 | CH_cpu_547 | 3 | 6 | 0.0000381059 |
| Cenchrus purpureus | GWHAORA00000005 | 2 | CH_cpu_704 | 4 | 57 | 0.00020705 |
| Eragrostis curvula | Contig4 | 2 | CH_ecu_195 | 5 | 32 | 0.00000000437568 |
| Hordeum vulgare | chr5H | 2 | CH_hvu_114 | 4 | 8 | 0.0000000100303 |
| Hordeum vulgare | chr6H | 2 | CH_hvu_251 | 3 | 7 | 0.0000247136 |
| Lolium perenne | Lp_chr6_0 | 2 | CH_lpe_25 | 6 | 17 | 0.000000000000016376 |
| Magnolia biondii | Chr04 | 2 | CH_mbi_665 | 2 | 4 | 0.000874119 |
| Oryza brachyantha | 2 | 2 | CH_obr_147 | 3 | 7 | 0.0000224629 |
| Oryza sativa ssp. indica | Chr2 | 2 | CH_osaindica_168 | 4 | 23 | 0.00000365043 |
| Oryza sativa ssp. indica | Chr1 | 2 | CH_osaindica_178 | 3 | 4 | 0.00000582752 |
| Oryza sativa Kitaake | Chr2 | 2 | CH_osak_115 | 4 | 5 | 0.00000000191218 |
| Oryza sativa ssp. japonica | chr02 | 2 | CH_osa_148 | 4 | 27 | 0.00000254923 |
| Populus trichocarpa | Chr01 | 2 | CH_ptr_40 | 6 | 11 | 4.69435e-17 |
| Sorghum bicolor | Chr04 | 2 | CH_sbi_442 | 2 | 2 | 0.000880023 |
| Secale cereale | GWHASIY00000006 | 2 | CH_sce_170 | 4 | 6 | 0.0000000101032 |
| Sequoiadendron giganteum | chr1 | 2 | CH_sgi_209 | 6 | 16 | 0.000000000000246953 |
| Sequoiadendron giganteum | chr3 | 2 | CH_sgi_87 | 9 | 31 | 4.52415e-21 |
| Setaria italica | scaffold_1 | 2 | CH_sit_169 | 3 | 3 | 0.00000042451 |
| Saccharum spontaneum | Chr4C | 2 | CH_ssp_103 | 4 | 4 | 0.00000000036081 |
| Setaria viridis | Chr_01 | 2 | CH_svi_169 | 3 | 3 | 0.000000490079 |
| Triticum aestivum | Chr6A | 2 | CH_tae_1295 | 3 | 10 | 0.000448987 |
| Triticum aestivum | Chr6D | 2 | CH_tae_480 | 4 | 7 | 0.0000000404591 |
| Triticum aestivum | Chr6B | 2 | CH_tae_577 | 4 | 10 | 0.000000242573 |
| Triticum turgidum | chr6A | 2 | CH_ttu_529 | 3 | 9 | 0.000140126 |
| Triticum turgidum | chr6B | 2 | CH_ttu_573 | 3 | 10 | 0.000200136 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |