Functional clusters
Information
- Type MapMan
- Description Cell wall organisation.pectin.rhamnogalacturonan I.modification and degradation.alpha-L-arabinofuranosidase activities.bifunctional alpha-L-arabinofuranosidase and beta-D-xylosidase (BXL)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Asparagus officinalis | AsparagusV1_02 | 1 | CH_aof_108 | 4 | 68 | 0.000218544 |
| Ceratophyllum demersum | 3 | 1 | CH_cde_215 | 2 | 2 | 0.000473878 |
| Cenchrus purpureus | GWHAORA00000009 | 1 | CH_cpu_746 | 3 | 13 | 0.000333916 |
| Digitaria exilis | Dexi_CM05836_chr08A | 1 | CH_dex_601 | 3 | 13 | 0.000390197 |
| Digitaria exilis | Dexi_CM05836_chr08B | 1 | CH_dex_717 | 3 | 17 | 0.000926983 |
| Eragrostis curvula | 2 | 1 | CH_ecu_781 | 3 | 34 | 0.000753505 |
| Elaeis guineensis | EG5.1_Chr2 | 1 | CH_egu_63 | 3 | 3 | 0.000000753878 |
| Musa acuminata | chr03 | 1 | CH_mac_17 | 5 | 5 | 0.000000000000156512 |
| Miscanthus sinensis | Chr10 | 1 | CH_msi_301 | 3 | 7 | 0.0000304603 |
| Oryza alta | GWHAZTO00000023 | 1 | CH_oal_343 | 4 | 58 | 0.0000400866 |
| Oryza sativa ssp. indica | Chr11 | 1 | CH_osaindica_162 | 4 | 32 | 0.00000311069 |
| Oryza sativa Kitaake | Chr11 | 1 | CH_osak_195 | 4 | 19 | 0.000000434402 |
| Sorghum bicolor | Chr05 | 1 | CH_sbi_257 | 3 | 9 | 0.0000519868 |
| Sequoiadendron giganteum | chr4 | 1 | CH_sgi_334 | 4 | 5 | 0.000000000364144 |
| Setaria italica | scaffold_8 | 1 | CH_sit_270 | 3 | 10 | 0.0000508843 |
| Solanum lycopersicum | SL4.0ch04 | 1 | CH_sly_175 | 3 | 3 | 0.000000289388 |
| Selaginella moellendorffii | scaffold_43 | 1 | CH_smo_146 | 2 | 2 | 0.000560224 |
| Setaria viridis | Chr_08 | 1 | CH_svi_292 | 3 | 11 | 0.0000565392 |
| Asparagus officinalis | AsparagusV1_02 | 2 | CH_aof_108 | 4 | 68 | 0.000218544 |
| Ceratophyllum demersum | 3 | 2 | CH_cde_215 | 2 | 2 | 0.000473878 |
| Cenchrus purpureus | GWHAORA00000009 | 2 | CH_cpu_746 | 3 | 13 | 0.000333916 |
| Digitaria exilis | Dexi_CM05836_chr08A | 2 | CH_dex_601 | 3 | 13 | 0.000390197 |
| Digitaria exilis | Dexi_CM05836_chr08B | 2 | CH_dex_717 | 3 | 17 | 0.000926983 |
| Eragrostis curvula | 2 | 2 | CH_ecu_781 | 3 | 34 | 0.000753505 |
| Elaeis guineensis | EG5.1_Chr2 | 2 | CH_egu_63 | 3 | 3 | 0.000000753878 |
| Musa acuminata | chr03 | 2 | CH_mac_17 | 5 | 5 | 0.000000000000156512 |
| Miscanthus sinensis | Chr10 | 2 | CH_msi_301 | 3 | 7 | 0.0000304603 |
| Oryza alta | GWHAZTO00000023 | 2 | CH_oal_343 | 4 | 58 | 0.0000400866 |
| Oryza sativa ssp. indica | Chr11 | 2 | CH_osaindica_162 | 4 | 32 | 0.00000311069 |
| Oryza sativa Kitaake | Chr11 | 2 | CH_osak_195 | 4 | 19 | 0.000000434402 |
| Sorghum bicolor | Chr05 | 2 | CH_sbi_257 | 3 | 9 | 0.0000519868 |
| Sequoiadendron giganteum | chr4 | 2 | CH_sgi_334 | 4 | 5 | 0.000000000364144 |
| Setaria italica | scaffold_8 | 2 | CH_sit_270 | 3 | 10 | 0.0000508843 |
| Solanum lycopersicum | SL4.0ch04 | 2 | CH_sly_175 | 3 | 3 | 0.000000289388 |
| Selaginella moellendorffii | scaffold_43 | 2 | CH_smo_146 | 2 | 2 | 0.000560224 |
| Setaria viridis | Chr_08 | 2 | CH_svi_292 | 3 | 11 | 0.0000565392 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |