Functional clusters
Information
- Type MapMan
- Description Cell wall organisation.hemicellulose.xylan.modification and degradation.xylan O-acetyltransferase (XOAT)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arabidopsis thaliana | Chr2 | 1 | CH_ath_412 | 3 | 34 | 0.000617351 |
| Amborella trichopoda | AmTr_v1.0_scaffold00023 | 1 | CH_atr_109 | 3 | 4 | 0.000000757232 |
| Brachypodium distachyon | Bd1 | 1 | CH_bdi_218 | 3 | 11 | 0.000112775 |
| Calamus simplicifolius | scaffold195 | 1 | CH_calsi_137 | 3 | 5 | 0.0000378304 |
| Calamus simplicifolius | scaffold485 | 1 | CH_calsi_46 | 4 | 6 | 0.0000000247634 |
| Cenchrus purpureus | GWHAORA00000004 | 1 | CH_cpu_440 | 3 | 3 | 0.00000419304 |
| Cenchrus purpureus | GWHAORA00000009 | 1 | CH_cpu_854 | 3 | 11 | 0.000690228 |
| Eragrostis curvula | 5 | 1 | CH_ecu_186 | 4 | 5 | 0.00000000267489 |
| Eragrostis curvula | 2 | 1 | CH_ecu_377 | 5 | 75 | 0.00000246679 |
| Elaeis guineensis | EG5.1_Chr5 | 1 | CH_egu_109 | 3 | 5 | 0.0000384706 |
| Elaeis guineensis | EG5.1_Chr5 | 1 | CH_egu_14 | 5 | 7 | 0.0000000000163181 |
| Glycine max | Gm03 | 1 | CH_gma_346 | 4 | 48 | 0.0000575839 |
| Hordeum vulgare | chr5H | 1 | CH_hvu_226 | 3 | 7 | 0.0000103712 |
| Lolium perenne | Lp_chr4_0 | 1 | CH_lpe_325 | 3 | 20 | 0.000211641 |
| Miscanthus sinensis | Chr15 | 1 | CH_msi_401 | 3 | 8 | 0.000115694 |
| Oryza alta | GWHAZTO00000015 | 1 | CH_oal_286 | 3 | 4 | 0.00000633369 |
| Oryza alta | GWHAZTO00000003 | 1 | CH_oal_613 | 3 | 11 | 0.000260929 |
| Oryza brachyantha | 3 | 1 | CH_obr_129 | 3 | 4 | 0.00000779081 |
| Oryza sativa ssp. indica | Chr3 | 1 | CH_osaindica_172 | 3 | 4 | 0.00000457886 |
| Oryza sativa Kitaake | Chr3 | 1 | CH_osak_257 | 3 | 5 | 0.0000172892 |
| Oropetium thomaeum | Chromosome_2 | 1 | CH_oth_215 | 3 | 13 | 0.000260291 |
| Oropetium thomaeum | Chromosome_4 | 1 | CH_oth_87 | 3 | 3 | 0.000000912135 |
| Phyllostachys edulis | hic_scaffold_15 | 1 | CH_ped_216 | 3 | 3 | 0.00000572783 |
| Panicum hallii | Chr03 | 1 | CH_pha_211 | 3 | 4 | 0.0000113431 |
| Panicum hallii | Chr09 | 1 | CH_pha_92 | 4 | 5 | 0.00000000535596 |
| Populus trichocarpa | Chr10 | 1 | CH_ptr_256 | 3 | 4 | 0.00000573166 |
| Populus trichocarpa | Chr08 | 1 | CH_ptr_268 | 3 | 5 | 0.0000143256 |
| Sorghum bicolor | Chr01 | 1 | CH_sbi_212 | 3 | 3 | 0.0000035109 |
| Sorghum bicolor | Chr08 | 1 | CH_sbi_228 | 4 | 21 | 0.0000104844 |
| Sorghum bicolor | Chr05 | 1 | CH_sbi_236 | 3 | 4 | 0.0000140389 |
| Sequoiadendron giganteum | HRSCAF_1 | 1 | CH_sgi_557 | 3 | 3 | 0.000000299026 |
| Setaria italica | scaffold_9 | 1 | CH_sit_213 | 3 | 3 | 0.00000283007 |
| Solanum lycopersicum | SL4.0ch05 | 1 | CH_sly_191 | 4 | 12 | 0.00000071279 |
| Spirodela polyrhiza | pseudo23 | 1 | CH_spo_213 | 2 | 2 | 0.000611527 |
| Setaria viridis | Chr_09 | 1 | CH_svi_229 | 3 | 4 | 0.00000914558 |
| Triticum aestivum | Chr5A | 1 | CH_tae_716 | 3 | 3 | 0.00000213114 |
| Zostera marina | Chr01 | 1 | CH_zosmarina_108 | 3 | 10 | 0.0000586608 |
| Arabidopsis thaliana | Chr2 | 2 | CH_ath_412 | 3 | 34 | 0.000617351 |
| Amborella trichopoda | AmTr_v1.0_scaffold00023 | 2 | CH_atr_109 | 3 | 4 | 0.000000757232 |
| Brachypodium distachyon | Bd1 | 2 | CH_bdi_218 | 3 | 11 | 0.000112775 |
| Calamus simplicifolius | scaffold195 | 2 | CH_calsi_137 | 3 | 5 | 0.0000378304 |
| Calamus simplicifolius | scaffold485 | 2 | CH_calsi_46 | 4 | 6 | 0.0000000247634 |
| Cenchrus purpureus | GWHAORA00000004 | 2 | CH_cpu_440 | 3 | 3 | 0.00000419304 |
| Cenchrus purpureus | GWHAORA00000009 | 2 | CH_cpu_854 | 3 | 11 | 0.000690228 |
| Eragrostis curvula | 5 | 2 | CH_ecu_186 | 4 | 5 | 0.00000000267489 |
| Eragrostis curvula | 2 | 2 | CH_ecu_377 | 5 | 75 | 0.00000246679 |
| Elaeis guineensis | EG5.1_Chr5 | 2 | CH_egu_109 | 3 | 5 | 0.0000384706 |
| Elaeis guineensis | EG5.1_Chr5 | 2 | CH_egu_14 | 5 | 7 | 0.0000000000163181 |
| Glycine max | Gm03 | 2 | CH_gma_346 | 4 | 48 | 0.0000575839 |
| Hordeum vulgare | chr5H | 2 | CH_hvu_226 | 3 | 7 | 0.0000103712 |
| Lolium perenne | Lp_chr4_0 | 2 | CH_lpe_325 | 3 | 20 | 0.000211641 |
| Miscanthus sinensis | Chr15 | 2 | CH_msi_401 | 3 | 8 | 0.000115694 |
| Oryza alta | GWHAZTO00000015 | 2 | CH_oal_286 | 3 | 4 | 0.00000633369 |
| Oryza alta | GWHAZTO00000003 | 2 | CH_oal_613 | 3 | 11 | 0.000260929 |
| Oryza brachyantha | 3 | 2 | CH_obr_129 | 3 | 4 | 0.00000779081 |
| Oryza sativa ssp. indica | Chr3 | 2 | CH_osaindica_172 | 3 | 4 | 0.00000457886 |
| Oryza sativa Kitaake | Chr3 | 2 | CH_osak_257 | 3 | 5 | 0.0000172892 |
| Oropetium thomaeum | Chromosome_2 | 2 | CH_oth_215 | 3 | 13 | 0.000260291 |
| Oropetium thomaeum | Chromosome_4 | 2 | CH_oth_87 | 3 | 3 | 0.000000912135 |
| Phyllostachys edulis | hic_scaffold_15 | 2 | CH_ped_216 | 3 | 3 | 0.00000572783 |
| Panicum hallii | Chr03 | 2 | CH_pha_211 | 3 | 4 | 0.0000113431 |
| Panicum hallii | Chr09 | 2 | CH_pha_92 | 4 | 5 | 0.00000000535596 |
| Populus trichocarpa | Chr10 | 2 | CH_ptr_256 | 3 | 4 | 0.00000573166 |
| Populus trichocarpa | Chr08 | 2 | CH_ptr_268 | 3 | 5 | 0.0000143256 |
| Sorghum bicolor | Chr01 | 2 | CH_sbi_212 | 3 | 3 | 0.0000035109 |
| Sorghum bicolor | Chr08 | 2 | CH_sbi_228 | 4 | 21 | 0.0000104844 |
| Sorghum bicolor | Chr05 | 2 | CH_sbi_236 | 3 | 4 | 0.0000140389 |
| Sequoiadendron giganteum | HRSCAF_1 | 2 | CH_sgi_557 | 3 | 3 | 0.000000299026 |
| Setaria italica | scaffold_9 | 2 | CH_sit_213 | 3 | 3 | 0.00000283007 |
| Solanum lycopersicum | SL4.0ch05 | 2 | CH_sly_191 | 4 | 12 | 0.00000071279 |
| Spirodela polyrhiza | pseudo23 | 2 | CH_spo_213 | 2 | 2 | 0.000611527 |
| Setaria viridis | Chr_09 | 2 | CH_svi_229 | 3 | 4 | 0.00000914558 |
| Triticum aestivum | Chr5A | 2 | CH_tae_716 | 3 | 3 | 0.00000213114 |
| Zostera marina | Chr01 | 2 | CH_zosmarina_108 | 3 | 10 | 0.0000586608 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |