Functional clusters

Information

  • Type MapMan
  • Description Cell wall organisation.hemicellulose.xyloglucan.biosynthesis.galactosyltransferase (XLT2)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aegilops tauschii 2D 1 CH_ata_198 2 2 0.0000492417
Brachypodium distachyon Bd5 1 CH_bdi_190 2 2 0.0000616675
Cenchrus purpureus GWHAORA00000005 1 CH_cpu_668 2 2 0.000185483
Cenchrus purpureus GWHAORA00000014 1 CH_cpu_669 2 2 0.000185483
Eragrostis curvula Contig685 1 CH_ecu_577 2 2 0.000116317
Hordeum vulgare chr2H 1 CH_hvu_350 2 4 0.000243492
Lolium perenne Lp_chr2_0 1 CH_lpe_370 2 6 0.000482106
Miscanthus sinensis Chr11 1 CH_msi_428 2 2 0.000193193
Miscanthus sinensis Chr12 1 CH_msi_429 2 2 0.000193193
Oropetium thomaeum Chromosome_6 1 CH_oth_142 2 2 0.0000711845
Phyllostachys edulis hic_scaffold_24 1 CH_ped_386 2 2 0.000244474
Phyllostachys edulis hic_scaffold_23 1 CH_ped_387 2 2 0.000244474
Panicum hallii Chr07 1 CH_pha_287 2 3 0.000174327
Sorghum bicolor Chr06 1 CH_sbi_274 2 2 0.0000586682
Secale cereale GWHASIY00000002 1 CH_sce_485 2 2 0.000045529
Setaria italica scaffold_7 1 CH_sit_282 2 2 0.0000580434
Setaria viridis Chr_07 1 CH_svi_267 2 2 0.0000521785
Triticum aestivum Chr2B 1 CH_tae_1201 2 2 0.000280599
Triticum aestivum Chr2A 1 CH_tae_1202 2 2 0.000280599
Triticum aestivum Chr2D 1 CH_tae_1203 2 2 0.000280599
Triticum dicoccoides 2A 1 CH_tdi_448 2 2 0.00017811
Triticum dicoccoides 2B 1 CH_tdi_449 2 2 0.00017811
Triticum turgidum chr2A 1 CH_ttu_552 2 2 0.000187521
Triticum turgidum chr2B 1 CH_ttu_553 2 2 0.000187521
Aegilops tauschii 2D 2 CH_ata_198 2 2 0.0000492417
Brachypodium distachyon Bd5 2 CH_bdi_190 2 2 0.0000616675
Cenchrus purpureus GWHAORA00000005 2 CH_cpu_668 2 2 0.000185483
Cenchrus purpureus GWHAORA00000014 2 CH_cpu_669 2 2 0.000185483
Eragrostis curvula Contig685 2 CH_ecu_577 2 2 0.000116317
Hordeum vulgare chr2H 2 CH_hvu_350 2 4 0.000243492
Lolium perenne Lp_chr2_0 2 CH_lpe_370 2 6 0.000482106
Miscanthus sinensis Chr11 2 CH_msi_428 2 2 0.000193193
Miscanthus sinensis Chr12 2 CH_msi_429 2 2 0.000193193
Oropetium thomaeum Chromosome_6 2 CH_oth_142 2 2 0.0000711845
Phyllostachys edulis hic_scaffold_24 2 CH_ped_386 2 2 0.000244474
Phyllostachys edulis hic_scaffold_23 2 CH_ped_387 2 2 0.000244474
Panicum hallii Chr07 2 CH_pha_287 2 3 0.000174327
Sorghum bicolor Chr06 2 CH_sbi_274 2 2 0.0000586682
Secale cereale GWHASIY00000002 2 CH_sce_485 2 2 0.000045529
Setaria italica scaffold_7 2 CH_sit_282 2 2 0.0000580434
Setaria viridis Chr_07 2 CH_svi_267 2 2 0.0000521785
Triticum aestivum Chr2B 2 CH_tae_1201 2 2 0.000280599
Triticum aestivum Chr2A 2 CH_tae_1202 2 2 0.000280599
Triticum aestivum Chr2D 2 CH_tae_1203 2 2 0.000280599
Triticum dicoccoides 2A 2 CH_tdi_448 2 2 0.00017811
Triticum dicoccoides 2B 2 CH_tdi_449 2 2 0.00017811
Triticum turgidum chr2A 2 CH_ttu_552 2 2 0.000187521
Triticum turgidum chr2B 2 CH_ttu_553 2 2 0.000187521

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001