Functional clusters

Information

  • Type MapMan
  • Description Cytoskeleton organisation.microfilament network.actin-membrane compartment interaction.NET-type actin-membrane nexus protein families.actin-binding protein (NET4)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Allium sativum chr5 1 CH_asa_390 2 2 0.0000387537
Brachypodium distachyon Bd2 1 CH_bdi_247 2 2 0.000185002
Eragrostis curvula Contig25 1 CH_ecu_764 2 4 0.000697859
Hordeum vulgare chr3H 1 CH_hvu_322 2 2 0.000121751
Lolium perenne Lp_chr3_0 1 CH_lpe_216 2 2 0.0000321425
Oryza alta GWHAZTO00000006 1 CH_oal_575 2 2 0.000201513
Oryza brachyantha 1 1 CH_obr_277 2 3 0.000537576
Oryza sativa ssp. indica Chr1 1 CH_osaindica_284 2 2 0.000154983
Oryza sativa Kitaake Chr1 1 CH_osak_440 2 3 0.000506548
Oryza sativa ssp. japonica chr01 1 CH_osa_346 2 3 0.000475289
Oropetium thomaeum Chromosome_3 1 CH_oth_141 2 2 0.0000711845
Phyllostachys edulis hic_scaffold_14 1 CH_ped_457 2 2 0.000611185
Panicum hallii Chr05 1 CH_pha_305 2 2 0.000174332
Secale cereale GWHASIY00000003 1 CH_sce_353 3 7 0.00000380764
Secale cereale GWHASIY00000003 1 CH_sce_961 2 2 0.00095611
Setaria italica scaffold_5 1 CH_sit_397 2 2 0.00034826
Saccharum spontaneum Chr3B 1 CH_ssp_246 3 3 0.000000187855
Setaria viridis Chr_05 1 CH_svi_352 2 2 0.000156535
Triticum aestivum Chr3A 1 CH_tae_1397 2 2 0.000673438
Triticum aestivum Chr3B 1 CH_tae_1398 2 2 0.000673438
Triticum aestivum Chr3D 1 CH_tae_1399 2 2 0.000673438
Triticum dicoccoides 3A 1 CH_tdi_525 2 2 0.000445276
Triticum dicoccoides 3B 1 CH_tdi_526 2 2 0.000445276
Triticum turgidum chr3B 1 CH_ttu_550 2 2 0.000187521
Triticum turgidum chr3A 1 CH_ttu_551 2 2 0.000187521
Zea mays B73 3 1 CH_zma_220 2 2 0.000306788
Allium sativum chr5 2 CH_asa_390 2 2 0.0000387537
Brachypodium distachyon Bd2 2 CH_bdi_247 2 2 0.000185002
Eragrostis curvula Contig25 2 CH_ecu_764 2 4 0.000697859
Hordeum vulgare chr3H 2 CH_hvu_322 2 2 0.000121751
Lolium perenne Lp_chr3_0 2 CH_lpe_216 2 2 0.0000321425
Oryza alta GWHAZTO00000006 2 CH_oal_575 2 2 0.000201513
Oryza brachyantha 1 2 CH_obr_277 2 3 0.000537576
Oryza sativa ssp. indica Chr1 2 CH_osaindica_284 2 2 0.000154983
Oryza sativa Kitaake Chr1 2 CH_osak_440 2 3 0.000506548
Oryza sativa ssp. japonica chr01 2 CH_osa_346 2 3 0.000475289
Oropetium thomaeum Chromosome_3 2 CH_oth_141 2 2 0.0000711845
Phyllostachys edulis hic_scaffold_14 2 CH_ped_457 2 2 0.000611185
Panicum hallii Chr05 2 CH_pha_305 2 2 0.000174332
Secale cereale GWHASIY00000003 2 CH_sce_353 3 7 0.00000380764
Secale cereale GWHASIY00000003 2 CH_sce_961 2 2 0.00095611
Setaria italica scaffold_5 2 CH_sit_397 2 2 0.00034826
Saccharum spontaneum Chr3B 2 CH_ssp_246 3 3 0.000000187855
Setaria viridis Chr_05 2 CH_svi_352 2 2 0.000156535
Triticum aestivum Chr3A 2 CH_tae_1397 2 2 0.000673438
Triticum aestivum Chr3B 2 CH_tae_1398 2 2 0.000673438
Triticum aestivum Chr3D 2 CH_tae_1399 2 2 0.000673438
Triticum dicoccoides 3A 2 CH_tdi_525 2 2 0.000445276
Triticum dicoccoides 3B 2 CH_tdi_526 2 2 0.000445276
Triticum turgidum chr3B 2 CH_ttu_550 2 2 0.000187521
Triticum turgidum chr3A 2 CH_ttu_551 2 2 0.000187521
Zea mays B73 3 2 CH_zma_220 2 2 0.000306788

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001