Functional clusters
Information
- Type MapMan
- Description Protein homeostasis.proteolysis.metallopeptidase activities.aminopeptidase activities.M20-class IAA-amino acid hydrolase
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Anthoceros agrestis | Sc2ySwM_228 | 1 | CH_aag_161 | 2 | 2 | 0.000481541 |
| Arabidopsis thaliana | Chr5 | 1 | CH_ath_400 | 2 | 3 | 0.000601633 |
| Amborella trichopoda | AmTr_v1.0_scaffold00018 | 1 | CH_atr_144 | 3 | 12 | 0.0000416048 |
| Cenchrus purpureus | GWHAORA00000011 | 1 | CH_cpu_104 | 7 | 47 | 0.00000000000500469 |
| Cenchrus purpureus | GWHAORA00000002 | 1 | CH_cpu_250 | 4 | 6 | 0.0000000272046 |
| Cenchrus purpureus | GWHAORA00000010 | 1 | CH_cpu_296 | 4 | 8 | 0.000000126876 |
| Cenchrus purpureus | GWHAORA00000004 | 1 | CH_cpu_507 | 3 | 4 | 0.0000187791 |
| Digitaria exilis | Dexi_CM05836_chr02A | 1 | CH_dex_166 | 4 | 8 | 0.0000000379457 |
| Digitaria exilis | Dexi_CM05836_chr02B | 1 | CH_dex_321 | 3 | 4 | 0.00000763805 |
| Eragrostis curvula | 5 | 1 | CH_ecu_371 | 4 | 32 | 0.00000206773 |
| Glycine max | Gm08 | 1 | CH_gma_45 | 5 | 7 | 0.000000000000186967 |
| Miscanthus sinensis | Chr04 | 1 | CH_msi_191 | 3 | 3 | 0.000000707605 |
| Oryza alta | GWHAZTO00000007 | 1 | CH_oal_241 | 3 | 4 | 0.00000165662 |
| Oryza alta | GWHAZTO00000019 | 1 | CH_oal_242 | 3 | 4 | 0.00000165662 |
| Oryza brachyantha | 7 | 1 | CH_obr_89 | 3 | 3 | 0.000000299729 |
| Oryza sativa ssp. indica | Chr7 | 1 | CH_osaindica_121 | 3 | 3 | 0.000000336284 |
| Oryza sativa Kitaake | Chr7 | 1 | CH_osak_190 | 3 | 3 | 0.000000399189 |
| Panicum hallii | Chr02 | 1 | CH_pha_26 | 5 | 5 | 0.0000000000000395191 |
| Sorghum bicolor | Chr02 | 1 | CH_sbi_170 | 3 | 3 | 0.000000619571 |
| Secale cereale | GWHASIY00000002 | 1 | CH_sce_165 | 4 | 7 | 0.00000000708186 |
| Sequoiadendron giganteum | chr8 | 1 | CH_sgi_49 | 9 | 11 | 2.82986e-26 |
| Sequoiadendron giganteum | chr6 | 1 | CH_sgi_617 | 3 | 3 | 0.00000199351 |
| Setaria italica | scaffold_2 | 1 | CH_sit_56 | 5 | 9 | 0.00000000000848981 |
| Saccharum spontaneum | Chr2A | 1 | CH_ssp_162 | 4 | 7 | 0.000000018029 |
| Setaria viridis | Chr_02 | 1 | CH_svi_60 | 5 | 11 | 0.0000000000203234 |
| Triticum aestivum | Chr2D | 1 | CH_tae_925 | 3 | 5 | 0.0000235851 |
| Triticum dicoccoides | 5B | 1 | CH_tdi_238 | 3 | 3 | 0.00000128085 |
| Anthoceros agrestis | Sc2ySwM_228 | 2 | CH_aag_161 | 2 | 2 | 0.000481541 |
| Arabidopsis thaliana | Chr5 | 2 | CH_ath_400 | 2 | 3 | 0.000601633 |
| Amborella trichopoda | AmTr_v1.0_scaffold00018 | 2 | CH_atr_144 | 3 | 12 | 0.0000416048 |
| Cenchrus purpureus | GWHAORA00000011 | 2 | CH_cpu_104 | 7 | 47 | 0.00000000000500469 |
| Cenchrus purpureus | GWHAORA00000002 | 2 | CH_cpu_250 | 4 | 6 | 0.0000000272046 |
| Cenchrus purpureus | GWHAORA00000010 | 2 | CH_cpu_296 | 4 | 8 | 0.000000126876 |
| Cenchrus purpureus | GWHAORA00000004 | 2 | CH_cpu_507 | 3 | 4 | 0.0000187791 |
| Digitaria exilis | Dexi_CM05836_chr02A | 2 | CH_dex_166 | 4 | 8 | 0.0000000379457 |
| Digitaria exilis | Dexi_CM05836_chr02B | 2 | CH_dex_321 | 3 | 4 | 0.00000763805 |
| Eragrostis curvula | 5 | 2 | CH_ecu_371 | 4 | 32 | 0.00000206773 |
| Glycine max | Gm08 | 2 | CH_gma_45 | 5 | 7 | 0.000000000000186967 |
| Miscanthus sinensis | Chr04 | 2 | CH_msi_191 | 3 | 3 | 0.000000707605 |
| Oryza alta | GWHAZTO00000007 | 2 | CH_oal_241 | 3 | 4 | 0.00000165662 |
| Oryza alta | GWHAZTO00000019 | 2 | CH_oal_242 | 3 | 4 | 0.00000165662 |
| Oryza brachyantha | 7 | 2 | CH_obr_89 | 3 | 3 | 0.000000299729 |
| Oryza sativa ssp. indica | Chr7 | 2 | CH_osaindica_121 | 3 | 3 | 0.000000336284 |
| Oryza sativa Kitaake | Chr7 | 2 | CH_osak_190 | 3 | 3 | 0.000000399189 |
| Panicum hallii | Chr02 | 2 | CH_pha_26 | 5 | 5 | 0.0000000000000395191 |
| Sorghum bicolor | Chr02 | 2 | CH_sbi_170 | 3 | 3 | 0.000000619571 |
| Secale cereale | GWHASIY00000002 | 2 | CH_sce_165 | 4 | 7 | 0.00000000708186 |
| Sequoiadendron giganteum | chr8 | 2 | CH_sgi_49 | 9 | 11 | 2.82986e-26 |
| Sequoiadendron giganteum | chr6 | 2 | CH_sgi_617 | 3 | 3 | 0.00000199351 |
| Setaria italica | scaffold_2 | 2 | CH_sit_56 | 5 | 9 | 0.00000000000848981 |
| Saccharum spontaneum | Chr2A | 2 | CH_ssp_162 | 4 | 7 | 0.000000018029 |
| Setaria viridis | Chr_02 | 2 | CH_svi_60 | 5 | 11 | 0.0000000000203234 |
| Triticum aestivum | Chr2D | 2 | CH_tae_925 | 3 | 5 | 0.0000235851 |
| Triticum dicoccoides | 5B | 2 | CH_tdi_238 | 3 | 3 | 0.00000128085 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |