Functional clusters

Information

  • Type MapMan
  • Description Protein homeostasis.proteolysis.serine-type peptidase activities.S28-class serine carboxypeptidase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Allium sativum chr2 1 CH_asa_442 3 10 0.0000445634
Aegilops tauschii 1D 1 CH_ata_303 2 2 0.000492417
Arabidopsis thaliana Chr4 1 CH_ath_406 2 2 0.000601633
Brachypodium distachyon Bd3 1 CH_bdi_331 2 2 0.000616675
Calamus simplicifolius scaffold272 1 CH_calsi_98 3 4 0.000000946316
Cenchrus purpureus GWHAORA00000011 1 CH_cpu_141 4 4 0.000000000120985
Cenchrus purpureus GWHAORA00000004 1 CH_cpu_347 3 3 0.000000652251
Glycine max Gm03 1 CH_gma_195 3 3 0.000000475419
Lolium perenne Lp_chr1_0 1 CH_lpe_357 2 2 0.000321425
Magnolia biondii Chr17 1 CH_mbi_22 7 18 1.08431e-17
Miscanthus sinensis Chr18 1 CH_msi_178 3 3 0.00000044478
Miscanthus sinensis Chr01 1 CH_msi_179 3 3 0.00000044478
Oryza sativa ssp. indica Chr10 1 CH_osaindica_373 2 2 0.000516609
Oryza sativa ssp. japonica chr10 1 CH_osa_367 2 2 0.000528123
Oropetium thomaeum Chromosome_1 1 CH_oth_239 2 2 0.000427107
Phyllostachys edulis hic_scaffold_8 1 CH_ped_259 3 5 0.0000283742
Panicum hallii Chr09 1 CH_pha_402 2 2 0.000581108
Populus trichocarpa Chr01 1 CH_ptr_48 6 7 5.08563e-16
Sorghum bicolor Chr10 1 CH_sbi_176 3 4 0.000000722748
Secale cereale GWHASIY00000001 1 CH_sce_215 4 17 0.0000000847855
Secale cereale GWHASIY00000006 1 CH_sce_254 3 3 0.000000261191
Sequoiadendron giganteum chr3 1 CH_sgi_179 6 8 0.0000000000000174393
Sequoiadendron giganteum chr2 1 CH_sgi_193 8 49 0.0000000000000889198
Setaria italica scaffold_9 1 CH_sit_444 2 2 0.000580434
Solanum lycopersicum SL4.0ch11 1 CH_sly_558 2 2 0.000880411
Saccharum spontaneum Chr8D 1 CH_ssp_423 3 4 0.00000330914
Saccharum spontaneum Chr8C 1 CH_ssp_726 3 10 0.0000991819
Setaria viridis Chr_09 1 CH_svi_450 2 2 0.000521785
Triticum aestivum Chr7A 1 CH_tae_317 4 4 0.000000000344665
Triticum aestivum Chr7D 1 CH_tae_318 4 4 0.000000000344665
Triticum aestivum Chr7B 1 CH_tae_61 7 8 2.39732e-20
Triticum dicoccoides 7A 1 CH_tdi_426 3 11 0.000121981
Triticum dicoccoides 7B 1 CH_tdi_66 5 7 0.000000000000534099
Triticum turgidum chr7B 1 CH_ttu_141 4 6 0.00000000137479
Triticum turgidum chr7A 1 CH_ttu_267 3 3 0.000000533328
Zoysia japonica ssp. nagirizaki Zjn_sc00047.1 1 CH_zjn_205 2 2 0.000369952
Zea mays B73 9 1 CH_zma_85 3 3 0.000000470605
Allium sativum chr2 2 CH_asa_442 3 10 0.0000445634
Aegilops tauschii 1D 2 CH_ata_303 2 2 0.000492417
Arabidopsis thaliana Chr4 2 CH_ath_406 2 2 0.000601633
Brachypodium distachyon Bd3 2 CH_bdi_331 2 2 0.000616675
Calamus simplicifolius scaffold272 2 CH_calsi_98 3 4 0.000000946316
Cenchrus purpureus GWHAORA00000011 2 CH_cpu_141 4 4 0.000000000120985
Cenchrus purpureus GWHAORA00000004 2 CH_cpu_347 3 3 0.000000652251
Glycine max Gm03 2 CH_gma_195 3 3 0.000000475419
Lolium perenne Lp_chr1_0 2 CH_lpe_357 2 2 0.000321425
Magnolia biondii Chr17 2 CH_mbi_22 7 18 1.08431e-17
Miscanthus sinensis Chr18 2 CH_msi_178 3 3 0.00000044478
Miscanthus sinensis Chr01 2 CH_msi_179 3 3 0.00000044478
Oryza sativa ssp. indica Chr10 2 CH_osaindica_373 2 2 0.000516609
Oryza sativa ssp. japonica chr10 2 CH_osa_367 2 2 0.000528123
Oropetium thomaeum Chromosome_1 2 CH_oth_239 2 2 0.000427107
Phyllostachys edulis hic_scaffold_8 2 CH_ped_259 3 5 0.0000283742
Panicum hallii Chr09 2 CH_pha_402 2 2 0.000581108
Populus trichocarpa Chr01 2 CH_ptr_48 6 7 5.08563e-16
Sorghum bicolor Chr10 2 CH_sbi_176 3 4 0.000000722748
Secale cereale GWHASIY00000001 2 CH_sce_215 4 17 0.0000000847855
Secale cereale GWHASIY00000006 2 CH_sce_254 3 3 0.000000261191
Sequoiadendron giganteum chr3 2 CH_sgi_179 6 8 0.0000000000000174393
Sequoiadendron giganteum chr2 2 CH_sgi_193 8 49 0.0000000000000889198
Setaria italica scaffold_9 2 CH_sit_444 2 2 0.000580434
Solanum lycopersicum SL4.0ch11 2 CH_sly_558 2 2 0.000880411
Saccharum spontaneum Chr8D 2 CH_ssp_423 3 4 0.00000330914
Saccharum spontaneum Chr8C 2 CH_ssp_726 3 10 0.0000991819
Setaria viridis Chr_09 2 CH_svi_450 2 2 0.000521785
Triticum aestivum Chr7A 2 CH_tae_317 4 4 0.000000000344665
Triticum aestivum Chr7D 2 CH_tae_318 4 4 0.000000000344665
Triticum aestivum Chr7B 2 CH_tae_61 7 8 2.39732e-20
Triticum dicoccoides 7A 2 CH_tdi_426 3 11 0.000121981
Triticum dicoccoides 7B 2 CH_tdi_66 5 7 0.000000000000534099
Triticum turgidum chr7B 2 CH_ttu_141 4 6 0.00000000137479
Triticum turgidum chr7A 2 CH_ttu_267 3 3 0.000000533328
Zoysia japonica ssp. nagirizaki Zjn_sc00047.1 2 CH_zjn_205 2 2 0.000369952
Zea mays B73 9 2 CH_zma_85 3 3 0.000000470605

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001