Functional clusters
Information
- Type MapMan
- Description Protein homeostasis.proteolysis.cysteine-type peptidase activities.C26-class gamma-glutamyl peptidase
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aegilops tauschii | 5D | 1 | CH_ata_272 | 2 | 2 | 0.00029545 |
| Arabidopsis thaliana | Chr4 | 1 | CH_ath_135 | 3 | 5 | 0.000000123109 |
| Amborella trichopoda | AmTr_v1.0_scaffold00025 | 1 | CH_atr_47 | 4 | 8 | 0.000000000526316 |
| Ceratophyllum demersum | 1 | 1 | CH_cde_34 | 3 | 3 | 0.000000187141 |
| Cenchrus purpureus | GWHAORA00000004 | 1 | CH_cpu_543 | 3 | 13 | 0.0000344096 |
| Eragrostis curvula | 3 | 1 | CH_ecu_63 | 6 | 15 | 8.28507e-16 |
| Miscanthus sinensis | Chr08 | 1 | CH_msi_146 | 3 | 3 | 0.0000000870898 |
| Panicum hallii | Chr01 | 1 | CH_pha_136 | 3 | 4 | 0.000000202603 |
| Sorghum bicolor | Chr04 | 1 | CH_sbi_387 | 2 | 2 | 0.000352009 |
| Sequoiadendron giganteum | chr3 | 1 | CH_sgi_524 | 3 | 3 | 0.000000124594 |
| Sequoiadendron giganteum | chr11 | 1 | CH_sgi_525 | 3 | 3 | 0.000000124594 |
| Setaria italica | scaffold_1 | 1 | CH_sit_137 | 3 | 3 | 0.0000000505369 |
| Spirodela polyrhiza | pseudo12 | 1 | CH_spo_222 | 2 | 2 | 0.000611527 |
| Setaria viridis | Chr_01 | 1 | CH_svi_129 | 3 | 3 | 0.0000000408399 |
| Triticum aestivum | Chr5D | 1 | CH_tae_249 | 4 | 4 | 0.0000000000268073 |
| Triticum aestivum | Chr5B | 1 | CH_tae_572 | 3 | 3 | 0.000000238835 |
| Triticum dicoccoides | 5A | 1 | CH_tdi_609 | 2 | 2 | 0.000831181 |
| Triticum dicoccoides | 5B | 1 | CH_tdi_610 | 2 | 2 | 0.000831181 |
| Zostera marina | Chr06 | 1 | CH_zosmarina_210 | 2 | 2 | 0.000579346 |
| Aegilops tauschii | 5D | 2 | CH_ata_272 | 2 | 2 | 0.00029545 |
| Arabidopsis thaliana | Chr4 | 2 | CH_ath_135 | 3 | 5 | 0.000000123109 |
| Amborella trichopoda | AmTr_v1.0_scaffold00025 | 2 | CH_atr_47 | 4 | 8 | 0.000000000526316 |
| Ceratophyllum demersum | 1 | 2 | CH_cde_34 | 3 | 3 | 0.000000187141 |
| Cenchrus purpureus | GWHAORA00000004 | 2 | CH_cpu_543 | 3 | 13 | 0.0000344096 |
| Eragrostis curvula | 3 | 2 | CH_ecu_63 | 6 | 15 | 8.28507e-16 |
| Miscanthus sinensis | Chr08 | 2 | CH_msi_146 | 3 | 3 | 0.0000000870898 |
| Panicum hallii | Chr01 | 2 | CH_pha_136 | 3 | 4 | 0.000000202603 |
| Sorghum bicolor | Chr04 | 2 | CH_sbi_387 | 2 | 2 | 0.000352009 |
| Sequoiadendron giganteum | chr3 | 2 | CH_sgi_524 | 3 | 3 | 0.000000124594 |
| Sequoiadendron giganteum | chr11 | 2 | CH_sgi_525 | 3 | 3 | 0.000000124594 |
| Setaria italica | scaffold_1 | 2 | CH_sit_137 | 3 | 3 | 0.0000000505369 |
| Spirodela polyrhiza | pseudo12 | 2 | CH_spo_222 | 2 | 2 | 0.000611527 |
| Setaria viridis | Chr_01 | 2 | CH_svi_129 | 3 | 3 | 0.0000000408399 |
| Triticum aestivum | Chr5D | 2 | CH_tae_249 | 4 | 4 | 0.0000000000268073 |
| Triticum aestivum | Chr5B | 2 | CH_tae_572 | 3 | 3 | 0.000000238835 |
| Triticum dicoccoides | 5A | 2 | CH_tdi_609 | 2 | 2 | 0.000831181 |
| Triticum dicoccoides | 5B | 2 | CH_tdi_610 | 2 | 2 | 0.000831181 |
| Zostera marina | Chr06 | 2 | CH_zosmarina_210 | 2 | 2 | 0.000579346 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |