Functional clusters
Information
- Type MapMan
- Description Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.Cullin-based ubiquitylation complexes.SKP1-CUL1-FBX (SCF) E3 ubiquitin ligase complexes.target protein binding component SKP1/ASK1
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Anthoceros agrestis | Sc2ySwM_362 | 1 | CH_aag_1 | 16 | 50 | 7.76792e-33 |
| Anthoceros agrestis | Sc2ySwM_344 | 1 | CH_aag_29 | 5 | 15 | 0.000000110062 |
| Asparagus officinalis | AsparagusV1_04 | 1 | CH_aof_13 | 4 | 8 | 0.0000000448546 |
| Aegilops tauschii | 2D | 1 | CH_ata_178 | 3 | 3 | 0.000021765 |
| Arabidopsis thaliana | Chr3 | 1 | CH_ath_109 | 4 | 8 | 0.0000000295308 |
| Arabidopsis thaliana | Chr2 | 1 | CH_ath_246 | 3 | 7 | 0.0000572639 |
| Calamus simplicifolius | scaffold1152 | 1 | CH_calsi_1 | 12 | 21 | 3.0312e-27 |
| Calamus simplicifolius | scaffold592 | 1 | CH_calsi_135 | 3 | 3 | 0.0000368842 |
| Calamus simplicifolius | scaffold329 | 1 | CH_calsi_67 | 4 | 5 | 0.00000018557 |
| Ceratophyllum demersum | 1 | 1 | CH_cde_6 | 5 | 5 | 0.000000000000231179 |
| Cenchrus purpureus | GWHAORA00000012 | 1 | CH_cpu_484 | 3 | 3 | 0.0000102353 |
| Cenchrus purpureus | GWHAORA00000010 | 1 | CH_cpu_550 | 3 | 4 | 0.000040925 |
| Cenchrus purpureus | GWHAORA00000004 | 1 | CH_cpu_702 | 3 | 6 | 0.000204462 |
| Cenchrus purpureus | GWHAORA00000013 | 1 | CH_cpu_754 | 3 | 7 | 0.000357666 |
| Eragrostis curvula | 1 | 1 | CH_ecu_603 | 3 | 14 | 0.000135233 |
| Elaeis guineensis | EG5.1_Chr16 | 1 | CH_egu_80 | 3 | 3 | 0.00000385016 |
| Elaeis guineensis | EG5.1_Chr4 | 1 | CH_egu_81 | 3 | 3 | 0.00000385016 |
| Hordeum vulgare | chr5H | 1 | CH_hvu_193 | 4 | 7 | 0.0000017499 |
| Hordeum vulgare | chrUn | 1 | CH_hvu_21 | 8 | 13 | 4.66419e-17 |
| Hordeum vulgare | chr7H | 1 | CH_hvu_218 | 4 | 9 | 0.00000628976 |
| Hordeum vulgare | chrUn | 1 | CH_hvu_435 | 5 | 73 | 0.000680003 |
| Lolium perenne | Lp_chr4_0 | 1 | CH_lpe_145 | 4 | 13 | 0.000000519915 |
| Lolium perenne | Lp_chr5_0 | 1 | CH_lpe_95 | 4 | 7 | 0.0000000254882 |
| Magnolia biondii | Chr13 | 1 | CH_mbi_276 | 3 | 4 | 0.0000160905 |
| Magnolia biondii | Chr16 | 1 | CH_mbi_277 | 3 | 5 | 0.0000160905 |
| Oryza alta | GWHAZTO00000019 | 1 | CH_oal_178 | 4 | 9 | 0.000000161753 |
| Oryza alta | GWHAZTO00000021 | 1 | CH_oal_316 | 3 | 4 | 0.0000159428 |
| Oryza alta | GWHAZTO00000007 | 1 | CH_oal_84 | 4 | 4 | 0.00000000128542 |
| Oryza brachyantha | 7 | 1 | CH_obr_4 | 9 | 11 | 2.51354e-23 |
| Oryza sativa ssp. indica | Chr9 | 1 | CH_osaindica_117 | 4 | 10 | 0.000000265314 |
| Oryza sativa ssp. indica | Chr7 | 1 | CH_osaindica_190 | 3 | 4 | 0.0000130629 |
| Oryza sativa Kitaake | Chr9 | 1 | CH_osak_204 | 4 | 9 | 0.000000595554 |
| Oryza sativa Kitaake | Chr8 | 1 | CH_osak_272 | 3 | 4 | 0.0000336498 |
| Oryza sativa Kitaake | Chr7 | 1 | CH_osak_37 | 6 | 6 | 0.00000000000000128348 |
| Oryza sativa ssp. japonica | chr09 | 1 | CH_osa_284 | 3 | 7 | 0.000166692 |
| Oryza sativa ssp. japonica | chr07 | 1 | CH_osa_61 | 4 | 4 | 0.00000000214118 |
| Panicum hallii | Chr02 | 1 | CH_pha_68 | 4 | 4 | 0.000000000589338 |
| Secale cereale | GWHASIY00000004 | 1 | CH_sce_115 | 5 | 6 | 0.000000000186015 |
| Secale cereale | GWHASIY00000005 | 1 | CH_sce_767 | 3 | 5 | 0.000383191 |
| Sequoiadendron giganteum | chr5 | 1 | CH_sgi_309 | 5 | 12 | 0.000000000100316 |
| Sequoiadendron giganteum | chr1 | 1 | CH_sgi_96 | 7 | 8 | 5.41934e-20 |
| Setaria italica | scaffold_2 | 1 | CH_sit_183 | 4 | 13 | 0.000000761362 |
| Solanum lycopersicum | SL4.0ch10 | 1 | CH_sly_131 | 4 | 5 | 0.00000000721678 |
| Solanum lycopersicum | SL4.0ch11 | 1 | CH_sly_239 | 4 | 20 | 0.00000695804 |
| Setaria viridis | Chr_02 | 1 | CH_svi_190 | 4 | 17 | 0.00000138005 |
| Setaria viridis | Chr_04 | 1 | CH_svi_197 | 3 | 3 | 0.00000185822 |
| Triticum aestivum | Chr5D | 1 | CH_tae_1002 | 3 | 3 | 0.0000659184 |
| Triticum aestivum | Chr7B | 1 | CH_tae_497 | 4 | 4 | 0.0000000548745 |
| Triticum aestivum | Chr2D | 1 | CH_tae_584 | 4 | 5 | 0.000000274189 |
| Zea mays B73 | 2 | 1 | CH_zma_21 | 5 | 5 | 0.000000000000596183 |
| Anthoceros agrestis | Sc2ySwM_362 | 2 | CH_aag_1 | 16 | 50 | 7.76792e-33 |
| Anthoceros agrestis | Sc2ySwM_344 | 2 | CH_aag_29 | 5 | 15 | 0.000000110062 |
| Asparagus officinalis | AsparagusV1_04 | 2 | CH_aof_13 | 4 | 8 | 0.0000000448546 |
| Aegilops tauschii | 2D | 2 | CH_ata_178 | 3 | 3 | 0.000021765 |
| Arabidopsis thaliana | Chr3 | 2 | CH_ath_109 | 4 | 8 | 0.0000000295308 |
| Arabidopsis thaliana | Chr2 | 2 | CH_ath_246 | 3 | 7 | 0.0000572639 |
| Calamus simplicifolius | scaffold1152 | 2 | CH_calsi_1 | 12 | 21 | 3.0312e-27 |
| Calamus simplicifolius | scaffold592 | 2 | CH_calsi_135 | 3 | 3 | 0.0000368842 |
| Calamus simplicifolius | scaffold329 | 2 | CH_calsi_67 | 4 | 5 | 0.00000018557 |
| Ceratophyllum demersum | 1 | 2 | CH_cde_6 | 5 | 5 | 0.000000000000231179 |
| Cenchrus purpureus | GWHAORA00000012 | 2 | CH_cpu_484 | 3 | 3 | 0.0000102353 |
| Cenchrus purpureus | GWHAORA00000010 | 2 | CH_cpu_550 | 3 | 4 | 0.000040925 |
| Cenchrus purpureus | GWHAORA00000004 | 2 | CH_cpu_702 | 3 | 6 | 0.000204462 |
| Cenchrus purpureus | GWHAORA00000013 | 2 | CH_cpu_754 | 3 | 7 | 0.000357666 |
| Eragrostis curvula | 1 | 2 | CH_ecu_603 | 3 | 14 | 0.000135233 |
| Elaeis guineensis | EG5.1_Chr16 | 2 | CH_egu_80 | 3 | 3 | 0.00000385016 |
| Elaeis guineensis | EG5.1_Chr4 | 2 | CH_egu_81 | 3 | 3 | 0.00000385016 |
| Hordeum vulgare | chr5H | 2 | CH_hvu_193 | 4 | 7 | 0.0000017499 |
| Hordeum vulgare | chrUn | 2 | CH_hvu_21 | 8 | 13 | 4.66419e-17 |
| Hordeum vulgare | chr7H | 2 | CH_hvu_218 | 4 | 9 | 0.00000628976 |
| Hordeum vulgare | chrUn | 2 | CH_hvu_435 | 5 | 73 | 0.000680003 |
| Lolium perenne | Lp_chr4_0 | 2 | CH_lpe_145 | 4 | 13 | 0.000000519915 |
| Lolium perenne | Lp_chr5_0 | 2 | CH_lpe_95 | 4 | 7 | 0.0000000254882 |
| Magnolia biondii | Chr13 | 2 | CH_mbi_276 | 3 | 4 | 0.0000160905 |
| Magnolia biondii | Chr16 | 2 | CH_mbi_277 | 3 | 5 | 0.0000160905 |
| Oryza alta | GWHAZTO00000019 | 2 | CH_oal_178 | 4 | 9 | 0.000000161753 |
| Oryza alta | GWHAZTO00000021 | 2 | CH_oal_316 | 3 | 4 | 0.0000159428 |
| Oryza alta | GWHAZTO00000007 | 2 | CH_oal_84 | 4 | 4 | 0.00000000128542 |
| Oryza brachyantha | 7 | 2 | CH_obr_4 | 9 | 11 | 2.51354e-23 |
| Oryza sativa ssp. indica | Chr9 | 2 | CH_osaindica_117 | 4 | 10 | 0.000000265314 |
| Oryza sativa ssp. indica | Chr7 | 2 | CH_osaindica_190 | 3 | 4 | 0.0000130629 |
| Oryza sativa Kitaake | Chr9 | 2 | CH_osak_204 | 4 | 9 | 0.000000595554 |
| Oryza sativa Kitaake | Chr8 | 2 | CH_osak_272 | 3 | 4 | 0.0000336498 |
| Oryza sativa Kitaake | Chr7 | 2 | CH_osak_37 | 6 | 6 | 0.00000000000000128348 |
| Oryza sativa ssp. japonica | chr09 | 2 | CH_osa_284 | 3 | 7 | 0.000166692 |
| Oryza sativa ssp. japonica | chr07 | 2 | CH_osa_61 | 4 | 4 | 0.00000000214118 |
| Panicum hallii | Chr02 | 2 | CH_pha_68 | 4 | 4 | 0.000000000589338 |
| Secale cereale | GWHASIY00000004 | 2 | CH_sce_115 | 5 | 6 | 0.000000000186015 |
| Secale cereale | GWHASIY00000005 | 2 | CH_sce_767 | 3 | 5 | 0.000383191 |
| Sequoiadendron giganteum | chr5 | 2 | CH_sgi_309 | 5 | 12 | 0.000000000100316 |
| Sequoiadendron giganteum | chr1 | 2 | CH_sgi_96 | 7 | 8 | 5.41934e-20 |
| Setaria italica | scaffold_2 | 2 | CH_sit_183 | 4 | 13 | 0.000000761362 |
| Solanum lycopersicum | SL4.0ch10 | 2 | CH_sly_131 | 4 | 5 | 0.00000000721678 |
| Solanum lycopersicum | SL4.0ch11 | 2 | CH_sly_239 | 4 | 20 | 0.00000695804 |
| Setaria viridis | Chr_02 | 2 | CH_svi_190 | 4 | 17 | 0.00000138005 |
| Setaria viridis | Chr_04 | 2 | CH_svi_197 | 3 | 3 | 0.00000185822 |
| Triticum aestivum | Chr5D | 2 | CH_tae_1002 | 3 | 3 | 0.0000659184 |
| Triticum aestivum | Chr7B | 2 | CH_tae_497 | 4 | 4 | 0.0000000548745 |
| Triticum aestivum | Chr2D | 2 | CH_tae_584 | 4 | 5 | 0.000000274189 |
| Zea mays B73 | 2 | 2 | CH_zma_21 | 5 | 5 | 0.000000000000596183 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |