Functional clusters

Information

  • Type MapMan
  • Description Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.ubiquitin conjugation (ubiquitylation).ubiquitin-ligase E3 activities.RING-domain E3 ligase activities.RING-H2-class ligase activities.ubiquitin protein ligase (RFI2)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Ceratophyllum demersum 1 1 CH_cde_265 2 2 0.000789796
Ceratophyllum demersum 1 1 CH_cde_266 2 2 0.000789796
Elaeis guineensis p5_sc00284 1 CH_egu_57 3 4 0.000000538421
Magnolia biondii Chr11 1 CH_mbi_669 2 3 0.00087414
Oropetium thomaeum Chromosome_1 1 CH_oth_257 2 2 0.000711845
Secale cereale GWHASIY00000001 1 CH_sce_616 2 2 0.000136587
Setaria italica scaffold_2 1 CH_sit_437 2 2 0.000580434
Setaria viridis Chr_02 1 CH_svi_441 2 2 0.000521785
Ceratophyllum demersum 1 2 CH_cde_265 2 2 0.000789796
Ceratophyllum demersum 1 2 CH_cde_266 2 2 0.000789796
Elaeis guineensis p5_sc00284 2 CH_egu_57 3 4 0.000000538421
Magnolia biondii Chr11 2 CH_mbi_669 2 3 0.00087414
Oropetium thomaeum Chromosome_1 2 CH_oth_257 2 2 0.000711845
Secale cereale GWHASIY00000001 2 CH_sce_616 2 2 0.000136587
Setaria italica scaffold_2 2 CH_sit_437 2 2 0.000580434
Setaria viridis Chr_02 2 CH_svi_441 2 2 0.000521785

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001