Functional clusters
Information
- Type MapMan
- Description Protein modification.phosphorylation.TKL protein kinase superfamily.LRR-VIII protein kinase families.protein kinase (LRR-VIII-2)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arabidopsis thaliana | Chr1 | 1 | CH_ath_250 | 3 | 12 | 0.0000773811 |
| Arabidopsis thaliana | Chr1 | 1 | CH_ath_46 | 4 | 4 | 0.0000000000504409 |
| Arabidopsis thaliana | Chr1 | 1 | CH_ath_47 | 4 | 4 | 0.0000000000504409 |
| Brachypodium distachyon | Bd5 | 1 | CH_bdi_317 | 2 | 2 | 0.000616675 |
| Cenchrus purpureus | GWHAORA00000014 | 1 | CH_cpu_349 | 3 | 4 | 0.000000688022 |
| Dioscorea dumetorum | contig390 | 1 | CH_ddu_31 | 4 | 4 | 0.000000000014842 |
| Glycine max | Gm13 | 1 | CH_gma_141 | 4 | 7 | 0.000000027797 |
| Glycine max | Gm12 | 1 | CH_gma_213 | 4 | 15 | 0.00000108181 |
| Glycine max | Gm01 | 1 | CH_gma_241 | 3 | 3 | 0.00000246353 |
| Hordeum vulgare | chr2H | 1 | CH_hvu_155 | 3 | 4 | 0.000000197634 |
| Lolium perenne | Lp_chr2_0 | 1 | CH_lpe_151 | 3 | 5 | 0.000000867717 |
| Musa acuminata | chr06 | 1 | CH_mac_212 | 2 | 2 | 0.000852273 |
| Magnolia biondii | Chr18 | 1 | CH_mbi_173 | 5 | 52 | 0.000000215033 |
| Magnolia biondii | Chr06 | 1 | CH_mbi_58 | 5 | 7 | 0.00000000000175372 |
| Miscanthus sinensis | Chr11 | 1 | CH_msi_77 | 4 | 5 | 0.000000000165235 |
| Oryza alta | GWHAZTO00000008 | 1 | CH_oal_140 | 4 | 10 | 0.0000000376769 |
| Oryza alta | GWHAZTO00000017 | 1 | CH_oal_203 | 4 | 18 | 0.000000548325 |
| Oryza alta | GWHAZTO00000005 | 1 | CH_oal_307 | 4 | 36 | 0.0000105258 |
| Oryza alta | GWHAZTO00000004 | 1 | CH_oal_353 | 3 | 8 | 0.0000524902 |
| Oryza brachyantha | 8 | 1 | CH_obr_17 | 6 | 9 | 0.00000000000000719034 |
| Oryza brachyantha | 5 | 1 | CH_obr_25 | 5 | 6 | 0.00000000000172028 |
| Oryza sativa ssp. indica | Chr8 | 1 | CH_osaindica_14 | 8 | 11 | 1.63136e-20 |
| Oryza sativa ssp. indica | Chr5 | 1 | CH_osaindica_38 | 7 | 32 | 0.000000000000853483 |
| Oryza sativa ssp. indica | Chr4 | 1 | CH_osaindica_47 | 5 | 6 | 0.00000000000843868 |
| Oryza sativa Kitaake | Chr8 | 1 | CH_osak_36 | 7 | 13 | 3.32541e-16 |
| Oryza sativa Kitaake | Chr5 | 1 | CH_osak_79 | 7 | 54 | 0.0000000000338225 |
| Oryza sativa Kitaake | Chr4 | 1 | CH_osak_85 | 5 | 8 | 0.0000000000652926 |
| Oryza sativa ssp. japonica | chr05 | 1 | CH_osa_225 | 3 | 12 | 0.0000579203 |
| Oryza sativa ssp. japonica | chr04 | 1 | CH_osa_84 | 4 | 14 | 0.0000000397668 |
| Phyllostachys edulis | hic_scaffold_23 | 1 | CH_ped_207 | 3 | 5 | 0.00000410793 |
| Phyllostachys edulis | hic_scaffold_13 | 1 | CH_ped_24 | 6 | 10 | 2.45104e-16 |
| Panicum hallii | Chr07 | 1 | CH_pha_140 | 3 | 3 | 0.000000283665 |
| Populus trichocarpa | Chr04 | 1 | CH_ptr_225 | 4 | 6 | 0.00000129229 |
| Populus trichocarpa | Chr11 | 1 | CH_ptr_3 | 22 | 48 | 5.98186e-49 |
| Populus trichocarpa | Chr19 | 1 | CH_ptr_408 | 4 | 18 | 0.000260553 |
| Populus trichocarpa | Chr01 | 1 | CH_ptr_89 | 6 | 10 | 0.0000000000247364 |
| Secale cereale | GWHASIY00000002 | 1 | CH_sce_206 | 3 | 3 | 0.0000000621882 |
| Sequoiadendron giganteum | chr11 | 1 | CH_sgi_1340 | 3 | 9 | 0.000528338 |
| Sequoiadendron giganteum | chr8 | 1 | CH_sgi_192 | 8 | 49 | 0.0000000000000889198 |
| Sequoiadendron giganteum | chr4 | 1 | CH_sgi_427 | 5 | 15 | 0.00000000425221 |
| Setaria italica | scaffold_7 | 1 | CH_sit_47 | 5 | 6 | 0.000000000000404517 |
| Solanum lycopersicum | SL4.0ch02 | 1 | CH_sly_62 | 5 | 9 | 0.000000000000627906 |
| Spirodela polyrhiza | pseudo19 | 1 | CH_spo_8 | 10 | 25 | 8.23696e-23 |
| Setaria viridis | Chr_07 | 1 | CH_svi_115 | 4 | 9 | 0.0000000177068 |
| Triticum aestivum | Chr2B | 1 | CH_tae_602 | 3 | 3 | 0.00000035694 |
| Triticum aestivum | Chr2A | 1 | CH_tae_603 | 3 | 3 | 0.00000035694 |
| Triticum aestivum | Chr2D | 1 | CH_tae_604 | 3 | 3 | 0.00000035694 |
| Triticum dicoccoides | 2A | 1 | CH_tdi_578 | 2 | 2 | 0.000623386 |
| Triticum dicoccoides | 2B | 1 | CH_tdi_579 | 2 | 2 | 0.000623386 |
| Triticum turgidum | chr2A | 1 | CH_ttu_721 | 2 | 2 | 0.000875096 |
| Triticum turgidum | chr2B | 1 | CH_ttu_722 | 2 | 2 | 0.000875096 |
| Vanilla planifolia | CM028151.1 | 1 | CH_vpl_45 | 3 | 4 | 0.000000131023 |
| Zoysia japonica ssp. nagirizaki | Zjn_sc00023.1 | 1 | CH_zjn_169 | 2 | 2 | 0.000221971 |
| Arabidopsis thaliana | Chr1 | 2 | CH_ath_250 | 3 | 12 | 0.0000773811 |
| Arabidopsis thaliana | Chr1 | 2 | CH_ath_46 | 4 | 4 | 0.0000000000504409 |
| Arabidopsis thaliana | Chr1 | 2 | CH_ath_47 | 4 | 4 | 0.0000000000504409 |
| Brachypodium distachyon | Bd5 | 2 | CH_bdi_317 | 2 | 2 | 0.000616675 |
| Cenchrus purpureus | GWHAORA00000014 | 2 | CH_cpu_349 | 3 | 4 | 0.000000688022 |
| Dioscorea dumetorum | contig390 | 2 | CH_ddu_31 | 4 | 4 | 0.000000000014842 |
| Glycine max | Gm13 | 2 | CH_gma_141 | 4 | 7 | 0.000000027797 |
| Glycine max | Gm12 | 2 | CH_gma_213 | 4 | 15 | 0.00000108181 |
| Glycine max | Gm01 | 2 | CH_gma_241 | 3 | 3 | 0.00000246353 |
| Hordeum vulgare | chr2H | 2 | CH_hvu_155 | 3 | 4 | 0.000000197634 |
| Lolium perenne | Lp_chr2_0 | 2 | CH_lpe_151 | 3 | 5 | 0.000000867717 |
| Musa acuminata | chr06 | 2 | CH_mac_212 | 2 | 2 | 0.000852273 |
| Magnolia biondii | Chr18 | 2 | CH_mbi_173 | 5 | 52 | 0.000000215033 |
| Magnolia biondii | Chr06 | 2 | CH_mbi_58 | 5 | 7 | 0.00000000000175372 |
| Miscanthus sinensis | Chr11 | 2 | CH_msi_77 | 4 | 5 | 0.000000000165235 |
| Oryza alta | GWHAZTO00000008 | 2 | CH_oal_140 | 4 | 10 | 0.0000000376769 |
| Oryza alta | GWHAZTO00000017 | 2 | CH_oal_203 | 4 | 18 | 0.000000548325 |
| Oryza alta | GWHAZTO00000005 | 2 | CH_oal_307 | 4 | 36 | 0.0000105258 |
| Oryza alta | GWHAZTO00000004 | 2 | CH_oal_353 | 3 | 8 | 0.0000524902 |
| Oryza brachyantha | 8 | 2 | CH_obr_17 | 6 | 9 | 0.00000000000000719034 |
| Oryza brachyantha | 5 | 2 | CH_obr_25 | 5 | 6 | 0.00000000000172028 |
| Oryza sativa ssp. indica | Chr8 | 2 | CH_osaindica_14 | 8 | 11 | 1.63136e-20 |
| Oryza sativa ssp. indica | Chr5 | 2 | CH_osaindica_38 | 7 | 32 | 0.000000000000853483 |
| Oryza sativa ssp. indica | Chr4 | 2 | CH_osaindica_47 | 5 | 6 | 0.00000000000843868 |
| Oryza sativa Kitaake | Chr8 | 2 | CH_osak_36 | 7 | 13 | 3.32541e-16 |
| Oryza sativa Kitaake | Chr5 | 2 | CH_osak_79 | 7 | 54 | 0.0000000000338225 |
| Oryza sativa Kitaake | Chr4 | 2 | CH_osak_85 | 5 | 8 | 0.0000000000652926 |
| Oryza sativa ssp. japonica | chr05 | 2 | CH_osa_225 | 3 | 12 | 0.0000579203 |
| Oryza sativa ssp. japonica | chr04 | 2 | CH_osa_84 | 4 | 14 | 0.0000000397668 |
| Phyllostachys edulis | hic_scaffold_23 | 2 | CH_ped_207 | 3 | 5 | 0.00000410793 |
| Phyllostachys edulis | hic_scaffold_13 | 2 | CH_ped_24 | 6 | 10 | 2.45104e-16 |
| Panicum hallii | Chr07 | 2 | CH_pha_140 | 3 | 3 | 0.000000283665 |
| Populus trichocarpa | Chr04 | 2 | CH_ptr_225 | 4 | 6 | 0.00000129229 |
| Populus trichocarpa | Chr11 | 2 | CH_ptr_3 | 22 | 48 | 5.98186e-49 |
| Populus trichocarpa | Chr19 | 2 | CH_ptr_408 | 4 | 18 | 0.000260553 |
| Populus trichocarpa | Chr01 | 2 | CH_ptr_89 | 6 | 10 | 0.0000000000247364 |
| Secale cereale | GWHASIY00000002 | 2 | CH_sce_206 | 3 | 3 | 0.0000000621882 |
| Sequoiadendron giganteum | chr11 | 2 | CH_sgi_1340 | 3 | 9 | 0.000528338 |
| Sequoiadendron giganteum | chr8 | 2 | CH_sgi_192 | 8 | 49 | 0.0000000000000889198 |
| Sequoiadendron giganteum | chr4 | 2 | CH_sgi_427 | 5 | 15 | 0.00000000425221 |
| Setaria italica | scaffold_7 | 2 | CH_sit_47 | 5 | 6 | 0.000000000000404517 |
| Solanum lycopersicum | SL4.0ch02 | 2 | CH_sly_62 | 5 | 9 | 0.000000000000627906 |
| Spirodela polyrhiza | pseudo19 | 2 | CH_spo_8 | 10 | 25 | 8.23696e-23 |
| Setaria viridis | Chr_07 | 2 | CH_svi_115 | 4 | 9 | 0.0000000177068 |
| Triticum aestivum | Chr2B | 2 | CH_tae_602 | 3 | 3 | 0.00000035694 |
| Triticum aestivum | Chr2A | 2 | CH_tae_603 | 3 | 3 | 0.00000035694 |
| Triticum aestivum | Chr2D | 2 | CH_tae_604 | 3 | 3 | 0.00000035694 |
| Triticum dicoccoides | 2A | 2 | CH_tdi_578 | 2 | 2 | 0.000623386 |
| Triticum dicoccoides | 2B | 2 | CH_tdi_579 | 2 | 2 | 0.000623386 |
| Triticum turgidum | chr2A | 2 | CH_ttu_721 | 2 | 2 | 0.000875096 |
| Triticum turgidum | chr2B | 2 | CH_ttu_722 | 2 | 2 | 0.000875096 |
| Vanilla planifolia | CM028151.1 | 2 | CH_vpl_45 | 3 | 4 | 0.000000131023 |
| Zoysia japonica ssp. nagirizaki | Zjn_sc00023.1 | 2 | CH_zjn_169 | 2 | 2 | 0.000221971 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |