Functional clusters
Information
- Type MapMan
- Description Protein modification.phosphorylation.TKL protein kinase superfamily.LRR-VIII protein kinase families.protein kinase (LRR-VIII-1)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Anthoceros agrestis | Sc2ySwM_368 | 1 | CH_aag_61 | 3 | 17 | 0.0000262551 |
| Asparagus officinalis | AsparagusV1_07 | 1 | CH_aof_148 | 3 | 28 | 0.000280137 |
| Allium sativum | chr7_2 | 1 | CH_asa_209 | 3 | 3 | 0.000000189236 |
| Arabidopsis thaliana | Chr5 | 1 | CH_ath_55 | 4 | 6 | 0.000000000133314 |
| Amborella trichopoda | AmTr_v1.0_scaffold00077 | 1 | CH_atr_88 | 3 | 3 | 0.0000000946662 |
| Cenchrus purpureus | GWHAORA00000001 | 1 | CH_cpu_647 | 3 | 16 | 0.000132271 |
| Eragrostis curvula | 7 | 1 | CH_ecu_367 | 3 | 5 | 0.0000018938 |
| Hordeum vulgare | chr3H | 1 | CH_hvu_194 | 4 | 30 | 0.0000018073 |
| Magnolia biondii | Chr03 | 1 | CH_mbi_244 | 3 | 6 | 0.00000396128 |
| Magnolia biondii | Chr15 | 1 | CH_mbi_94 | 4 | 8 | 0.00000000168334 |
| Oropetium thomaeum | Chromosome_3 | 1 | CH_oth_212 | 3 | 14 | 0.000231912 |
| Phyllostachys edulis | hic_scaffold_16 | 1 | CH_ped_194 | 4 | 16 | 0.00000178357 |
| Phyllostachys edulis | hic_scaffold_21 | 1 | CH_ped_294 | 3 | 6 | 0.0000567326 |
| Populus trichocarpa | Chr04 | 1 | CH_ptr_13 | 11 | 14 | 4.16723e-30 |
| Populus trichocarpa | Chr16 | 1 | CH_ptr_282 | 3 | 4 | 0.0000308568 |
| Sorghum bicolor | Chr03 | 1 | CH_sbi_398 | 3 | 19 | 0.000419171 |
| Sequoiadendron giganteum | chr5 | 1 | CH_sgi_1386 | 3 | 11 | 0.000779001 |
| Sequoiadendron giganteum | chr1 | 1 | CH_sgi_37 | 10 | 13 | 1.10482e-27 |
| Sequoiadendron giganteum | chr1 | 1 | CH_sgi_590 | 4 | 12 | 0.00000102466 |
| Setaria italica | scaffold_5 | 1 | CH_sit_373 | 3 | 15 | 0.000192782 |
| Solanum lycopersicum | SL4.0ch01 | 1 | CH_sly_201 | 3 | 4 | 0.00000115739 |
| Selaginella moellendorffii | scaffold_2 | 1 | CH_smo_172 | 2 | 2 | 0.000933707 |
| Spirodela polyrhiza | pseudo3 | 1 | CH_spo_56 | 5 | 40 | 0.0000000296454 |
| Spirodela polyrhiza | pseudo13 | 1 | CH_spo_95 | 3 | 6 | 0.0000174399 |
| Saccharum spontaneum | Chr3C | 1 | CH_ssp_64 | 6 | 29 | 0.00000000000449273 |
| Saccharum spontaneum | Chr5A | 1 | CH_ssp_825 | 3 | 11 | 0.000187126 |
| Setaria viridis | Chr_05 | 1 | CH_svi_375 | 3 | 16 | 0.000191753 |
| Triticum aestivum | Chr3A | 1 | CH_tae_376 | 5 | 21 | 0.00000000265475 |
| Triticum aestivum | Chr3D | 1 | CH_tae_765 | 4 | 22 | 0.00000392256 |
| Triticum aestivum | Chr3B | 1 | CH_tae_800 | 4 | 24 | 0.00000569571 |
| Triticum dicoccoides | 3B | 1 | CH_tdi_639 | 3 | 21 | 0.000981669 |
| Triticum turgidum | chr3A | 1 | CH_ttu_145 | 5 | 19 | 0.00000000168802 |
| Triticum turgidum | chr3B | 1 | CH_ttu_370 | 4 | 24 | 0.0000057981 |
| Zea mays B73 | 3 | 1 | CH_zma_176 | 3 | 13 | 0.000134378 |
| Zea mays B73 | 6 | 1 | CH_zma_290 | 3 | 23 | 0.000830782 |
| Anthoceros agrestis | Sc2ySwM_368 | 2 | CH_aag_61 | 3 | 17 | 0.0000262551 |
| Asparagus officinalis | AsparagusV1_07 | 2 | CH_aof_148 | 3 | 28 | 0.000280137 |
| Allium sativum | chr7_2 | 2 | CH_asa_209 | 3 | 3 | 0.000000189236 |
| Arabidopsis thaliana | Chr5 | 2 | CH_ath_55 | 4 | 6 | 0.000000000133314 |
| Amborella trichopoda | AmTr_v1.0_scaffold00077 | 2 | CH_atr_88 | 3 | 3 | 0.0000000946662 |
| Cenchrus purpureus | GWHAORA00000001 | 2 | CH_cpu_647 | 3 | 16 | 0.000132271 |
| Eragrostis curvula | 7 | 2 | CH_ecu_367 | 3 | 5 | 0.0000018938 |
| Hordeum vulgare | chr3H | 2 | CH_hvu_194 | 4 | 30 | 0.0000018073 |
| Magnolia biondii | Chr03 | 2 | CH_mbi_244 | 3 | 6 | 0.00000396128 |
| Magnolia biondii | Chr15 | 2 | CH_mbi_94 | 4 | 8 | 0.00000000168334 |
| Oropetium thomaeum | Chromosome_3 | 2 | CH_oth_212 | 3 | 14 | 0.000231912 |
| Phyllostachys edulis | hic_scaffold_16 | 2 | CH_ped_194 | 4 | 16 | 0.00000178357 |
| Phyllostachys edulis | hic_scaffold_21 | 2 | CH_ped_294 | 3 | 6 | 0.0000567326 |
| Populus trichocarpa | Chr04 | 2 | CH_ptr_13 | 11 | 14 | 4.16723e-30 |
| Populus trichocarpa | Chr16 | 2 | CH_ptr_282 | 3 | 4 | 0.0000308568 |
| Sorghum bicolor | Chr03 | 2 | CH_sbi_398 | 3 | 19 | 0.000419171 |
| Sequoiadendron giganteum | chr5 | 2 | CH_sgi_1386 | 3 | 11 | 0.000779001 |
| Sequoiadendron giganteum | chr1 | 2 | CH_sgi_37 | 10 | 13 | 1.10482e-27 |
| Sequoiadendron giganteum | chr1 | 2 | CH_sgi_590 | 4 | 12 | 0.00000102466 |
| Setaria italica | scaffold_5 | 2 | CH_sit_373 | 3 | 15 | 0.000192782 |
| Solanum lycopersicum | SL4.0ch01 | 2 | CH_sly_201 | 3 | 4 | 0.00000115739 |
| Selaginella moellendorffii | scaffold_2 | 2 | CH_smo_172 | 2 | 2 | 0.000933707 |
| Spirodela polyrhiza | pseudo3 | 2 | CH_spo_56 | 5 | 40 | 0.0000000296454 |
| Spirodela polyrhiza | pseudo13 | 2 | CH_spo_95 | 3 | 6 | 0.0000174399 |
| Saccharum spontaneum | Chr3C | 2 | CH_ssp_64 | 6 | 29 | 0.00000000000449273 |
| Saccharum spontaneum | Chr5A | 2 | CH_ssp_825 | 3 | 11 | 0.000187126 |
| Setaria viridis | Chr_05 | 2 | CH_svi_375 | 3 | 16 | 0.000191753 |
| Triticum aestivum | Chr3A | 2 | CH_tae_376 | 5 | 21 | 0.00000000265475 |
| Triticum aestivum | Chr3D | 2 | CH_tae_765 | 4 | 22 | 0.00000392256 |
| Triticum aestivum | Chr3B | 2 | CH_tae_800 | 4 | 24 | 0.00000569571 |
| Triticum dicoccoides | 3B | 2 | CH_tdi_639 | 3 | 21 | 0.000981669 |
| Triticum turgidum | chr3A | 2 | CH_ttu_145 | 5 | 19 | 0.00000000168802 |
| Triticum turgidum | chr3B | 2 | CH_ttu_370 | 4 | 24 | 0.0000057981 |
| Zea mays B73 | 3 | 2 | CH_zma_176 | 3 | 13 | 0.000134378 |
| Zea mays B73 | 6 | 2 | CH_zma_290 | 3 | 23 | 0.000830782 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |