Functional clusters
Information
- Type MapMan
- Description Protein modification.phosphorylation.TKL protein kinase superfamily.receptor-like protein kinase (RLCK-Os)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Ananas comosus | LG02 | 1 | CH_aco_142 | 2 | 2 | 0.000497678 |
| Amborella trichopoda | AmTr_v1.0_scaffold00019 | 1 | CH_atr_48 | 4 | 12 | 0.000000000744338 |
| Calamus simplicifolius | scaffold369 | 1 | CH_calsi_9 | 6 | 20 | 0.00000000000000831922 |
| Cenchrus purpureus | GWHAORA00000014 | 1 | CH_cpu_367 | 3 | 7 | 0.00000100326 |
| Dioscorea dumetorum | contig806 | 1 | CH_ddu_227 | 2 | 2 | 0.000207268 |
| Digitaria exilis | Dexi_CM05836_chrUA | 1 | CH_dex_705 | 2 | 2 | 0.000701825 |
| Eragrostis curvula | Contig30 | 1 | CH_ecu_807 | 2 | 2 | 0.000814222 |
| Eragrostis curvula | 4 | 1 | CH_ecu_81 | 5 | 9 | 0.0000000000000448441 |
| Glycine max | Gm15 | 1 | CH_gma_23 | 6 | 7 | 1.04231e-18 |
| Glycine max | Gm09 | 1 | CH_gma_231 | 3 | 5 | 0.00000181486 |
| Hordeum vulgare | chr2H | 1 | CH_hvu_60 | 4 | 4 | 0.0000000000140377 |
| Lolium perenne | Lp_chr2_0 | 1 | CH_lpe_223 | 2 | 2 | 0.0000321425 |
| Magnolia biondii | Chr14 | 1 | CH_mbi_214 | 3 | 9 | 0.00000118849 |
| Miscanthus sinensis | Chr12 | 1 | CH_msi_239 | 3 | 6 | 0.00000373129 |
| Miscanthus sinensis | Chr04 | 1 | CH_msi_264 | 3 | 7 | 0.00000652911 |
| Oryza alta | GWHAZTO00000007 | 1 | CH_oal_148 | 3 | 3 | 0.0000000511661 |
| Oryza alta | GWHAZTO00000004 | 1 | CH_oal_783 | 2 | 2 | 0.000725448 |
| Oryza brachyantha | 4 | 1 | CH_obr_234 | 2 | 2 | 0.000179201 |
| Oryza sativa ssp. indica | Chr4 | 1 | CH_osaindica_92 | 3 | 3 | 0.0000000400338 |
| Oryza sativa Kitaake | Chr4 | 1 | CH_osak_175 | 3 | 3 | 0.000000166329 |
| Oropetium thomaeum | Chromosome_6 | 1 | CH_oth_80 | 3 | 3 | 0.000000304018 |
| Phyllostachys edulis | hic_scaffold_24 | 1 | CH_ped_118 | 3 | 3 | 0.0000000498072 |
| Panicum hallii | Chr07 | 1 | CH_pha_135 | 3 | 4 | 0.000000202603 |
| Sorghum bicolor | Chr06 | 1 | CH_sbi_61 | 4 | 5 | 0.0000000000151456 |
| Secale cereale | GWHASIY00000002 | 1 | CH_sce_236 | 3 | 3 | 0.000000174127 |
| Sequoiadendron giganteum | chr4 | 1 | CH_sgi_30 | 12 | 37 | 7.97993e-29 |
| Setaria italica | scaffold_3 | 1 | CH_sit_136 | 3 | 3 | 0.0000000505369 |
| Setaria viridis | Chr_03 | 1 | CH_svi_128 | 3 | 3 | 0.0000000408399 |
| Triticum aestivum | Chr2B | 1 | CH_tae_696 | 3 | 4 | 0.00000142761 |
| Triticum dicoccoides | 2A | 1 | CH_tdi_234 | 3 | 4 | 0.00000116307 |
| Triticum turgidum | chr2A | 1 | CH_ttu_276 | 3 | 4 | 0.000000703221 |
| Triticum turgidum | chr2B | 1 | CH_ttu_314 | 3 | 5 | 0.00000175788 |
| Zea mays B73 | 2 | 1 | CH_zma_121 | 3 | 8 | 0.00000768263 |
| Ananas comosus | LG02 | 2 | CH_aco_142 | 2 | 2 | 0.000497678 |
| Amborella trichopoda | AmTr_v1.0_scaffold00019 | 2 | CH_atr_48 | 4 | 12 | 0.000000000744338 |
| Calamus simplicifolius | scaffold369 | 2 | CH_calsi_9 | 6 | 20 | 0.00000000000000831922 |
| Cenchrus purpureus | GWHAORA00000014 | 2 | CH_cpu_367 | 3 | 7 | 0.00000100326 |
| Dioscorea dumetorum | contig806 | 2 | CH_ddu_227 | 2 | 2 | 0.000207268 |
| Digitaria exilis | Dexi_CM05836_chrUA | 2 | CH_dex_705 | 2 | 2 | 0.000701825 |
| Eragrostis curvula | Contig30 | 2 | CH_ecu_807 | 2 | 2 | 0.000814222 |
| Eragrostis curvula | 4 | 2 | CH_ecu_81 | 5 | 9 | 0.0000000000000448441 |
| Glycine max | Gm15 | 2 | CH_gma_23 | 6 | 7 | 1.04231e-18 |
| Glycine max | Gm09 | 2 | CH_gma_231 | 3 | 5 | 0.00000181486 |
| Hordeum vulgare | chr2H | 2 | CH_hvu_60 | 4 | 4 | 0.0000000000140377 |
| Lolium perenne | Lp_chr2_0 | 2 | CH_lpe_223 | 2 | 2 | 0.0000321425 |
| Magnolia biondii | Chr14 | 2 | CH_mbi_214 | 3 | 9 | 0.00000118849 |
| Miscanthus sinensis | Chr12 | 2 | CH_msi_239 | 3 | 6 | 0.00000373129 |
| Miscanthus sinensis | Chr04 | 2 | CH_msi_264 | 3 | 7 | 0.00000652911 |
| Oryza alta | GWHAZTO00000007 | 2 | CH_oal_148 | 3 | 3 | 0.0000000511661 |
| Oryza alta | GWHAZTO00000004 | 2 | CH_oal_783 | 2 | 2 | 0.000725448 |
| Oryza brachyantha | 4 | 2 | CH_obr_234 | 2 | 2 | 0.000179201 |
| Oryza sativa ssp. indica | Chr4 | 2 | CH_osaindica_92 | 3 | 3 | 0.0000000400338 |
| Oryza sativa Kitaake | Chr4 | 2 | CH_osak_175 | 3 | 3 | 0.000000166329 |
| Oropetium thomaeum | Chromosome_6 | 2 | CH_oth_80 | 3 | 3 | 0.000000304018 |
| Phyllostachys edulis | hic_scaffold_24 | 2 | CH_ped_118 | 3 | 3 | 0.0000000498072 |
| Panicum hallii | Chr07 | 2 | CH_pha_135 | 3 | 4 | 0.000000202603 |
| Sorghum bicolor | Chr06 | 2 | CH_sbi_61 | 4 | 5 | 0.0000000000151456 |
| Secale cereale | GWHASIY00000002 | 2 | CH_sce_236 | 3 | 3 | 0.000000174127 |
| Sequoiadendron giganteum | chr4 | 2 | CH_sgi_30 | 12 | 37 | 7.97993e-29 |
| Setaria italica | scaffold_3 | 2 | CH_sit_136 | 3 | 3 | 0.0000000505369 |
| Setaria viridis | Chr_03 | 2 | CH_svi_128 | 3 | 3 | 0.0000000408399 |
| Triticum aestivum | Chr2B | 2 | CH_tae_696 | 3 | 4 | 0.00000142761 |
| Triticum dicoccoides | 2A | 2 | CH_tdi_234 | 3 | 4 | 0.00000116307 |
| Triticum turgidum | chr2A | 2 | CH_ttu_276 | 3 | 4 | 0.000000703221 |
| Triticum turgidum | chr2B | 2 | CH_ttu_314 | 3 | 5 | 0.00000175788 |
| Zea mays B73 | 2 | 2 | CH_zma_121 | 3 | 8 | 0.00000768263 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |