Functional clusters
Information
- Type MapMan
- Description Protein modification.phosphorylation.TKL protein kinase superfamily.G-Lectin protein kinase families.protein kinase (SD-2)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Ananas comosus | LG05 | 1 | CH_aco_37 | 3 | 3 | 0.00000375668 |
| Allium sativum | chr8 | 1 | CH_asa_298 | 4 | 14 | 0.00000547577 |
| Aegilops tauschii | 7D | 1 | CH_ata_214 | 4 | 19 | 0.0000809878 |
| Cenchrus purpureus | GWHAORA00000007 | 1 | CH_cpu_290 | 4 | 5 | 0.000000119904 |
| Cenchrus purpureus | GWHAORA00000012 | 1 | CH_cpu_537 | 3 | 3 | 0.0000316807 |
| Cenchrus purpureus | GWHAORA00000006 | 1 | CH_cpu_553 | 4 | 16 | 0.0000433535 |
| Cenchrus purpureus | GWHAORA00000009 | 1 | CH_cpu_60 | 6 | 6 | 0.0000000000000129348 |
| Dioscorea dumetorum | contig73 | 1 | CH_ddu_189 | 3 | 4 | 0.000128644 |
| Dioscorea dumetorum | contig557 | 1 | CH_ddu_247 | 3 | 5 | 0.000321365 |
| Glycine max | Gm03 | 1 | CH_gma_89 | 5 | 7 | 0.000000000244703 |
| Hordeum vulgare | chr3H | 1 | CH_hvu_164 | 4 | 6 | 0.000000274577 |
| Hordeum vulgare | chr4H | 1 | CH_hvu_365 | 3 | 5 | 0.00024381 |
| Lolium perenne | Lp_chr3_0 | 1 | CH_lpe_37 | 6 | 14 | 0.00000000000637722 |
| Magnolia biondii | Chr18 | 1 | CH_mbi_543 | 3 | 8 | 0.000350212 |
| Miscanthus sinensis | Chr06 | 1 | CH_msi_165 | 4 | 8 | 0.000000191859 |
| Oryza alta | GWHAZTO00000011 | 1 | CH_oal_546 | 3 | 6 | 0.000172699 |
| Oryza alta | GWHAZTO00000001 | 1 | CH_oal_617 | 3 | 7 | 0.000302124 |
| Oryza alta | GWHAZTO00000012 | 1 | CH_oal_708 | 3 | 8 | 0.00048324 |
| Oryza alta | GWHAZTO00000013 | 1 | CH_oal_78 | 5 | 11 | 0.000000000696673 |
| Oryza brachyantha | 1 | 1 | CH_obr_15 | 7 | 10 | 0.00000000000000183084 |
| Oryza sativa ssp. indica | Chr1 | 1 | CH_osaindica_257 | 3 | 5 | 0.000131017 |
| Oryza sativa Kitaake | Chr4 | 1 | CH_osak_199 | 4 | 5 | 0.000000476649 |
| Oryza sativa Kitaake | Chr12 | 1 | CH_osak_235 | 4 | 7 | 0.0000033299 |
| Oryza sativa Kitaake | Chr1 | 1 | CH_osak_35 | 7 | 7 | 1.57549e-16 |
| Oryza sativa Kitaake | Chr11 | 1 | CH_osak_467 | 3 | 5 | 0.000769104 |
| Oryza sativa Kitaake | Chr6 | 1 | CH_osak_468 | 3 | 5 | 0.000769104 |
| Oryza sativa ssp. japonica | chr01 | 1 | CH_osa_17 | 7 | 11 | 0.0000000000000046957 |
| Oryza sativa ssp. japonica | chr11 | 1 | CH_osa_295 | 3 | 5 | 0.000298318 |
| Oryza sativa ssp. japonica | chr12 | 1 | CH_osa_370 | 3 | 6 | 0.00059623 |
| Oropetium thomaeum | Chromosome_3 | 1 | CH_oth_101 | 3 | 3 | 0.00000736549 |
| Phyllostachys edulis | hic_scaffold_8 | 1 | CH_ped_200 | 3 | 3 | 0.00000283901 |
| Panicum hallii | Chr05 | 1 | CH_pha_390 | 3 | 6 | 0.00055161 |
| Panicum hallii | Chr05 | 1 | CH_pha_90 | 5 | 10 | 0.00000000509792 |
| Populus trichocarpa | Chr16 | 1 | CH_ptr_172 | 4 | 5 | 0.0000000687596 |
| Populus trichocarpa | Chr19 | 1 | CH_ptr_271 | 3 | 3 | 0.0000183118 |
| Populus trichocarpa | Chr13 | 1 | CH_ptr_398 | 3 | 5 | 0.000182901 |
| Sorghum bicolor | Chr03 | 1 | CH_sbi_433 | 3 | 7 | 0.000810189 |
| Secale cereale | GWHASIY00000004 | 1 | CH_sce_133 | 7 | 40 | 0.00000000109225 |
| Secale cereale | GWHASIY00000003 | 1 | CH_sce_287 | 4 | 6 | 0.000000898375 |
| Secale cereale | GWHASIY00000001 | 1 | CH_sce_864 | 3 | 5 | 0.000571952 |
| Sequoiadendron giganteum | chr2 | 1 | CH_sgi_53 | 14 | 55 | 9.3952e-26 |
| Sequoiadendron giganteum | chr7 | 1 | CH_sgi_976 | 3 | 3 | 0.0000540383 |
| Setaria italica | scaffold_5 | 1 | CH_sit_20 | 8 | 12 | 3.63301e-18 |
| Spirodela polyrhiza | pseudo28 | 1 | CH_spo_54 | 4 | 5 | 0.0000000288927 |
| Spirodela polyrhiza | pseudo20 | 1 | CH_spo_68 | 5 | 21 | 0.0000000713634 |
| Saccharum spontaneum | Chr3C | 1 | CH_ssp_218 | 4 | 6 | 0.0000000863921 |
| Setaria viridis | Chr_05 | 1 | CH_svi_29 | 7 | 12 | 0.00000000000000255641 |
| Setaria viridis | Chr_04 | 1 | CH_svi_301 | 3 | 4 | 0.0000662873 |
| Triticum aestivum | Chr7A | 1 | CH_tae_1081 | 3 | 3 | 0.000129603 |
| Triticum aestivum | Chr7D | 1 | CH_tae_1082 | 3 | 3 | 0.000129603 |
| Triticum aestivum | Chr3B | 1 | CH_tae_1083 | 3 | 3 | 0.000129603 |
| Triticum aestivum | Chr3D | 1 | CH_tae_1084 | 3 | 3 | 0.000129603 |
| Triticum aestivum | Chr1D | 1 | CH_tae_540 | 4 | 4 | 0.000000135771 |
| Triticum aestivum | Chr3A | 1 | CH_tae_541 | 4 | 4 | 0.000000135771 |
| Triticum aestivum | Chr7B | 1 | CH_tae_713 | 4 | 6 | 0.00000203315 |
| Triticum dicoccoides | 3A | 1 | CH_tdi_156 | 4 | 4 | 0.0000000288246 |
| Triticum dicoccoides | 3B | 1 | CH_tdi_512 | 3 | 5 | 0.000365966 |
| Triticum dicoccoides | 1B | 1 | CH_tdi_513 | 3 | 5 | 0.000365966 |
| Triticum turgidum | chr3A | 1 | CH_ttu_247 | 4 | 5 | 0.000000255268 |
| Triticum turgidum | chr3B | 1 | CH_ttu_474 | 3 | 3 | 0.0000554134 |
| Ananas comosus | LG05 | 2 | CH_aco_37 | 3 | 3 | 0.00000375668 |
| Allium sativum | chr8 | 2 | CH_asa_298 | 4 | 14 | 0.00000547577 |
| Aegilops tauschii | 7D | 2 | CH_ata_214 | 4 | 19 | 0.0000809878 |
| Cenchrus purpureus | GWHAORA00000007 | 2 | CH_cpu_290 | 4 | 5 | 0.000000119904 |
| Cenchrus purpureus | GWHAORA00000012 | 2 | CH_cpu_537 | 3 | 3 | 0.0000316807 |
| Cenchrus purpureus | GWHAORA00000006 | 2 | CH_cpu_553 | 4 | 16 | 0.0000433535 |
| Cenchrus purpureus | GWHAORA00000009 | 2 | CH_cpu_60 | 6 | 6 | 0.0000000000000129348 |
| Dioscorea dumetorum | contig73 | 2 | CH_ddu_189 | 3 | 4 | 0.000128644 |
| Dioscorea dumetorum | contig557 | 2 | CH_ddu_247 | 3 | 5 | 0.000321365 |
| Glycine max | Gm03 | 2 | CH_gma_89 | 5 | 7 | 0.000000000244703 |
| Hordeum vulgare | chr3H | 2 | CH_hvu_164 | 4 | 6 | 0.000000274577 |
| Hordeum vulgare | chr4H | 2 | CH_hvu_365 | 3 | 5 | 0.00024381 |
| Lolium perenne | Lp_chr3_0 | 2 | CH_lpe_37 | 6 | 14 | 0.00000000000637722 |
| Magnolia biondii | Chr18 | 2 | CH_mbi_543 | 3 | 8 | 0.000350212 |
| Miscanthus sinensis | Chr06 | 2 | CH_msi_165 | 4 | 8 | 0.000000191859 |
| Oryza alta | GWHAZTO00000011 | 2 | CH_oal_546 | 3 | 6 | 0.000172699 |
| Oryza alta | GWHAZTO00000001 | 2 | CH_oal_617 | 3 | 7 | 0.000302124 |
| Oryza alta | GWHAZTO00000012 | 2 | CH_oal_708 | 3 | 8 | 0.00048324 |
| Oryza alta | GWHAZTO00000013 | 2 | CH_oal_78 | 5 | 11 | 0.000000000696673 |
| Oryza brachyantha | 1 | 2 | CH_obr_15 | 7 | 10 | 0.00000000000000183084 |
| Oryza sativa ssp. indica | Chr1 | 2 | CH_osaindica_257 | 3 | 5 | 0.000131017 |
| Oryza sativa Kitaake | Chr4 | 2 | CH_osak_199 | 4 | 5 | 0.000000476649 |
| Oryza sativa Kitaake | Chr12 | 2 | CH_osak_235 | 4 | 7 | 0.0000033299 |
| Oryza sativa Kitaake | Chr1 | 2 | CH_osak_35 | 7 | 7 | 1.57549e-16 |
| Oryza sativa Kitaake | Chr11 | 2 | CH_osak_467 | 3 | 5 | 0.000769104 |
| Oryza sativa Kitaake | Chr6 | 2 | CH_osak_468 | 3 | 5 | 0.000769104 |
| Oryza sativa ssp. japonica | chr01 | 2 | CH_osa_17 | 7 | 11 | 0.0000000000000046957 |
| Oryza sativa ssp. japonica | chr11 | 2 | CH_osa_295 | 3 | 5 | 0.000298318 |
| Oryza sativa ssp. japonica | chr12 | 2 | CH_osa_370 | 3 | 6 | 0.00059623 |
| Oropetium thomaeum | Chromosome_3 | 2 | CH_oth_101 | 3 | 3 | 0.00000736549 |
| Phyllostachys edulis | hic_scaffold_8 | 2 | CH_ped_200 | 3 | 3 | 0.00000283901 |
| Panicum hallii | Chr05 | 2 | CH_pha_390 | 3 | 6 | 0.00055161 |
| Panicum hallii | Chr05 | 2 | CH_pha_90 | 5 | 10 | 0.00000000509792 |
| Populus trichocarpa | Chr16 | 2 | CH_ptr_172 | 4 | 5 | 0.0000000687596 |
| Populus trichocarpa | Chr19 | 2 | CH_ptr_271 | 3 | 3 | 0.0000183118 |
| Populus trichocarpa | Chr13 | 2 | CH_ptr_398 | 3 | 5 | 0.000182901 |
| Sorghum bicolor | Chr03 | 2 | CH_sbi_433 | 3 | 7 | 0.000810189 |
| Secale cereale | GWHASIY00000004 | 2 | CH_sce_133 | 7 | 40 | 0.00000000109225 |
| Secale cereale | GWHASIY00000003 | 2 | CH_sce_287 | 4 | 6 | 0.000000898375 |
| Secale cereale | GWHASIY00000001 | 2 | CH_sce_864 | 3 | 5 | 0.000571952 |
| Sequoiadendron giganteum | chr2 | 2 | CH_sgi_53 | 14 | 55 | 9.3952e-26 |
| Sequoiadendron giganteum | chr7 | 2 | CH_sgi_976 | 3 | 3 | 0.0000540383 |
| Setaria italica | scaffold_5 | 2 | CH_sit_20 | 8 | 12 | 3.63301e-18 |
| Spirodela polyrhiza | pseudo28 | 2 | CH_spo_54 | 4 | 5 | 0.0000000288927 |
| Spirodela polyrhiza | pseudo20 | 2 | CH_spo_68 | 5 | 21 | 0.0000000713634 |
| Saccharum spontaneum | Chr3C | 2 | CH_ssp_218 | 4 | 6 | 0.0000000863921 |
| Setaria viridis | Chr_05 | 2 | CH_svi_29 | 7 | 12 | 0.00000000000000255641 |
| Setaria viridis | Chr_04 | 2 | CH_svi_301 | 3 | 4 | 0.0000662873 |
| Triticum aestivum | Chr7A | 2 | CH_tae_1081 | 3 | 3 | 0.000129603 |
| Triticum aestivum | Chr7D | 2 | CH_tae_1082 | 3 | 3 | 0.000129603 |
| Triticum aestivum | Chr3B | 2 | CH_tae_1083 | 3 | 3 | 0.000129603 |
| Triticum aestivum | Chr3D | 2 | CH_tae_1084 | 3 | 3 | 0.000129603 |
| Triticum aestivum | Chr1D | 2 | CH_tae_540 | 4 | 4 | 0.000000135771 |
| Triticum aestivum | Chr3A | 2 | CH_tae_541 | 4 | 4 | 0.000000135771 |
| Triticum aestivum | Chr7B | 2 | CH_tae_713 | 4 | 6 | 0.00000203315 |
| Triticum dicoccoides | 3A | 2 | CH_tdi_156 | 4 | 4 | 0.0000000288246 |
| Triticum dicoccoides | 3B | 2 | CH_tdi_512 | 3 | 5 | 0.000365966 |
| Triticum dicoccoides | 1B | 2 | CH_tdi_513 | 3 | 5 | 0.000365966 |
| Triticum turgidum | chr3A | 2 | CH_ttu_247 | 4 | 5 | 0.000000255268 |
| Triticum turgidum | chr3B | 2 | CH_ttu_474 | 3 | 3 | 0.0000554134 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |