Functional clusters

Information

  • Type MapMan
  • Description Protein biosynthesis.ribosome biogenesis.rRNA biosynthesis.post-transcriptional rRNA modification.methylation.C/D small nucleolar ribonucleoprotein (snoRNP) rRNA methylation complex.snoRNP scaffold component Nop58

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Oryza alta GWHAZTO00000015 1 CH_oal_471 2 2 0.000120908
Oryza alta GWHAZTO00000003 1 CH_oal_759 2 4 0.000725414
Oryza brachyantha 3 1 CH_obr_158 2 2 0.0000597336
Oryza sativa Kitaake Chr3 1 CH_osak_288 2 2 0.0000562857
Oryza sativa ssp. japonica chr03 1 CH_osa_195 2 2 0.0000528123
Setaria italica scaffold_9 1 CH_sit_273 2 2 0.0000580434
Saccharum spontaneum Chr3B 1 CH_ssp_1301 2 2 0.000858922
Setaria viridis Chr_09 1 CH_svi_256 2 2 0.0000521785
Oryza alta GWHAZTO00000015 2 CH_oal_471 2 2 0.000120908
Oryza alta GWHAZTO00000003 2 CH_oal_759 2 4 0.000725414
Oryza brachyantha 3 2 CH_obr_158 2 2 0.0000597336
Oryza sativa Kitaake Chr3 2 CH_osak_288 2 2 0.0000562857
Oryza sativa ssp. japonica chr03 2 CH_osa_195 2 2 0.0000528123
Setaria italica scaffold_9 2 CH_sit_273 2 2 0.0000580434
Saccharum spontaneum Chr3B 2 CH_ssp_1301 2 2 0.000858922
Setaria viridis Chr_09 2 CH_svi_256 2 2 0.0000521785

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001