Functional clusters

Information

  • Type MapMan
  • Description RNA processing.mRNA silencing.miRNA pathway.miRNA uridylation and cytidylation.uridylyltransferase (HESO1)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Brachypodium distachyon Bd2 1 CH_bdi_189 2 2 0.0000616675
Cenchrus purpureus GWHAORA00000009 1 CH_cpu_890 2 3 0.000927371
Cenchrus purpureus GWHAORA00000007 1 CH_cpu_891 2 3 0.000927371
Lolium perenne Lp_chr3_0 1 CH_lpe_102 3 6 0.0000000309931
Miscanthus sinensis Chr05 1 CH_msi_469 2 3 0.000289782
Oryza alta GWHAZTO00000013 1 CH_oal_548 2 3 0.000181359
Oryza brachyantha 1 1 CH_obr_167 2 2 0.0000597336
Oryza sativa Kitaake Chr1 1 CH_osak_297 2 2 0.0000562857
Oryza sativa ssp. japonica chr01 1 CH_osa_204 2 2 0.0000528123
Oropetium thomaeum Chromosome_3 1 CH_oth_138 2 2 0.0000711845
Phyllostachys edulis hic_scaffold_16 1 CH_ped_381 2 2 0.000244474
Phyllostachys edulis hic_scaffold_14 1 CH_ped_481 2 3 0.000733387
Panicum hallii Chr05 1 CH_pha_286 2 3 0.000174327
Physcomitrium patens Chr09 1 CH_ppa_86 2 2 0.0000612726
Sorghum bicolor Chr03 1 CH_sbi_321 2 3 0.000176
Secale cereale GWHASIY00000003 1 CH_sce_482 2 2 0.000045529
Setaria italica scaffold_5 1 CH_sit_387 2 4 0.00034824
Saccharum spontaneum Chr3C 1 CH_ssp_964 2 6 0.000357867
Setaria viridis Chr_05 1 CH_svi_398 2 4 0.000313054
Triticum aestivum Chr3B 1 CH_tae_1052 2 2 0.00011224
Triticum dicoccoides 3B 1 CH_tdi_403 2 2 0.0000890551
Triticum turgidum chr3B 1 CH_ttu_190 3 4 0.0000000234424
Brachypodium distachyon Bd2 2 CH_bdi_189 2 2 0.0000616675
Cenchrus purpureus GWHAORA00000009 2 CH_cpu_890 2 3 0.000927371
Cenchrus purpureus GWHAORA00000007 2 CH_cpu_891 2 3 0.000927371
Lolium perenne Lp_chr3_0 2 CH_lpe_102 3 6 0.0000000309931
Miscanthus sinensis Chr05 2 CH_msi_469 2 3 0.000289782
Oryza alta GWHAZTO00000013 2 CH_oal_548 2 3 0.000181359
Oryza brachyantha 1 2 CH_obr_167 2 2 0.0000597336
Oryza sativa Kitaake Chr1 2 CH_osak_297 2 2 0.0000562857
Oryza sativa ssp. japonica chr01 2 CH_osa_204 2 2 0.0000528123
Oropetium thomaeum Chromosome_3 2 CH_oth_138 2 2 0.0000711845
Phyllostachys edulis hic_scaffold_16 2 CH_ped_381 2 2 0.000244474
Phyllostachys edulis hic_scaffold_14 2 CH_ped_481 2 3 0.000733387
Panicum hallii Chr05 2 CH_pha_286 2 3 0.000174327
Physcomitrium patens Chr09 2 CH_ppa_86 2 2 0.0000612726
Sorghum bicolor Chr03 2 CH_sbi_321 2 3 0.000176
Secale cereale GWHASIY00000003 2 CH_sce_482 2 2 0.000045529
Setaria italica scaffold_5 2 CH_sit_387 2 4 0.00034824
Saccharum spontaneum Chr3C 2 CH_ssp_964 2 6 0.000357867
Setaria viridis Chr_05 2 CH_svi_398 2 4 0.000313054
Triticum aestivum Chr3B 2 CH_tae_1052 2 2 0.00011224
Triticum dicoccoides 3B 2 CH_tdi_403 2 2 0.0000890551
Triticum turgidum chr3B 2 CH_ttu_190 3 4 0.0000000234424

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001