Functional clusters

Information

  • Type MapMan
  • Description Chromatin organisation.DNA methylation.RNA-directed DNA methylation (RdDM) pathway.stabilization factor (SGS3)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Allium sativum chr6 1 CH_asa_797 2 2 0.000581305
Allium sativum chr6 1 CH_asa_798 2 2 0.000581305
Amborella trichopoda AmTr_v1.0_scaffold00099 1 CH_atr_318 2 3 0.000714919
Cenchrus purpureus GWHAORA00000001 1 CH_cpu_516 3 15 0.0000228118
Eragrostis curvula 6 1 CH_ecu_440 3 34 0.0000134858
Miscanthus sinensis Chr15 1 CH_msi_473 2 3 0.000289782
Oryza alta GWHAZTO00000012 1 CH_oal_514 2 2 0.000120908
Oryza alta GWHAZTO00000024 1 CH_oal_515 2 2 0.000120908
Oryza brachyantha 12 1 CH_obr_55 3 4 0.00000000535231
Oryza sativa ssp. indica Chr12 1 CH_osaindica_222 2 2 0.0000516609
Oryza sativa Kitaake Chr12 1 CH_osak_348 2 3 0.000168852
Oryza sativa ssp. japonica chr12 1 CH_osa_257 2 3 0.000158433
Phyllostachys edulis hic_scaffold_12 1 CH_ped_477 2 4 0.000733372
Populus trichocarpa Chr03 1 CH_ptr_35 6 6 3.0491e-18
Sorghum bicolor Chr08 1 CH_sbi_325 2 3 0.000176
Secale cereale GWHASIY00000004 1 CH_sce_111 4 4 0.000000000140159
Secale cereale GWHASIY00000004 1 CH_sce_355 4 30 0.00000382427
Sequoiadendron giganteum chr3 1 CH_sgi_1366 2 2 0.000730727
Sequoiadendron giganteum chr2 1 CH_sgi_553 3 4 0.000000284764
Setaria italica scaffold_7 1 CH_sit_293 2 2 0.0000580434
Saccharum spontaneum Chr7A 1 CH_ssp_909 2 2 0.000238589
Saccharum spontaneum Chr7C 1 CH_ssp_910 2 2 0.000238589
Setaria viridis Chr_07 1 CH_svi_277 2 2 0.0000521785
Allium sativum chr6 2 CH_asa_797 2 2 0.000581305
Allium sativum chr6 2 CH_asa_798 2 2 0.000581305
Amborella trichopoda AmTr_v1.0_scaffold00099 2 CH_atr_318 2 3 0.000714919
Cenchrus purpureus GWHAORA00000001 2 CH_cpu_516 3 15 0.0000228118
Eragrostis curvula 6 2 CH_ecu_440 3 34 0.0000134858
Miscanthus sinensis Chr15 2 CH_msi_473 2 3 0.000289782
Oryza alta GWHAZTO00000012 2 CH_oal_514 2 2 0.000120908
Oryza alta GWHAZTO00000024 2 CH_oal_515 2 2 0.000120908
Oryza brachyantha 12 2 CH_obr_55 3 4 0.00000000535231
Oryza sativa ssp. indica Chr12 2 CH_osaindica_222 2 2 0.0000516609
Oryza sativa Kitaake Chr12 2 CH_osak_348 2 3 0.000168852
Oryza sativa ssp. japonica chr12 2 CH_osa_257 2 3 0.000158433
Phyllostachys edulis hic_scaffold_12 2 CH_ped_477 2 4 0.000733372
Populus trichocarpa Chr03 2 CH_ptr_35 6 6 3.0491e-18
Sorghum bicolor Chr08 2 CH_sbi_325 2 3 0.000176
Secale cereale GWHASIY00000004 2 CH_sce_111 4 4 0.000000000140159
Secale cereale GWHASIY00000004 2 CH_sce_355 4 30 0.00000382427
Sequoiadendron giganteum chr3 2 CH_sgi_1366 2 2 0.000730727
Sequoiadendron giganteum chr2 2 CH_sgi_553 3 4 0.000000284764
Setaria italica scaffold_7 2 CH_sit_293 2 2 0.0000580434
Saccharum spontaneum Chr7A 2 CH_ssp_909 2 2 0.000238589
Saccharum spontaneum Chr7C 2 CH_ssp_910 2 2 0.000238589
Setaria viridis Chr_07 2 CH_svi_277 2 2 0.0000521785

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001