Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zjn_sc00064.1.g00710.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM05M004474 ORTHO05M005474 3.1e-171 604.4 326 100.0
Seita.9G306500 Setaria italica HOM05M004474 ORTHO05M005474 1.5e-152 542.3 410 74.1
Sevir.9G312000 Setaria viridis HOM05M004474 ORTHO05M005474 1.5e-152 542.3 410 74.1
Pahal.9G367400 Panicum hallii HOM05M004474 ORTHO05M005474 5.5e-152 540.4 410 74.4
GWHGAORA028512 Cenchrus purpureus HOM05M004474 ORTHO05M005474 8.8e-150 533.1 410 73.7
Zm00001eb025160 Zea mays B73 HOM05M004474 ORTHO05M005474 9.7e-149 529.6 410 73.2
Zm00007a00015904 Zea mays B104 HOM05M004474 ORTHO05M005474 8.2e-148 526.6 408 73.0
OB01G27090 Oryza brachyantha HOM05M004474 ORTHO05M005474 1.8e-147 525.4 410 72.0
GWHGAZTO055419 Oryza alta HOM05M004474 ORTHO05M005474 4.1e-147 524.2 410 71.7
GWHGAORA052653 Cenchrus purpureus HOM05M004474 ORTHO05M005474 7.0e-147 523.5 423 71.4
OsKitaake01g184500 Oryza sativa Kitaake HOM05M004474 ORTHO05M005474 7.0e-147 523.5 410 71.5
Os01g0511600 Oryza sativa ssp. japonica HOM05M004474 ORTHO05M005474 7.0e-147 523.5 410 71.5
Sobic.001G283000 Sorghum bicolor HOM05M004474 ORTHO05M005474 9.1e-147 523.1 411 72.7
Misin01G262700 Miscanthus sinensis HOM05M004474 ORTHO05M005474 2.5e-144 515.0 412 71.4
AET1Gv20509100 Aegilops tauschii HOM05M004474 ORTHO05M005474 4.7e-143 510.8 410 70.0
Horvu_MOREX_1H01G322600 Hordeum vulgare HOM05M004474 ORTHO05M005474 4.0e-142 507.7 410 69.5
TraesCS1A03G0528100 Triticum aestivum HOM05M004474 ORTHO05M005474 4.0e-142 507.7 410 69.8
TRIDC1AG029870 Triticum dicoccoides HOM05M004474 ORTHO05M005474 4.0e-142 507.7 410 69.8
TRITD1Av1G128930 Triticum turgidum HOM05M004474 ORTHO05M005474 4.0e-142 507.7 410 69.8
EJB05_23207 Eragrostis curvula HOM05M004474 ORTHO05M005474 6.8e-142 506.9 352 81.0
Misin02G258900 Miscanthus sinensis HOM05M004474 ORTHO05M005474 8.8e-142 506.5 411 71.0
TraesCS1B03G0617500 Triticum aestivum HOM05M004474 ORTHO05M005474 8.8e-142 506.5 410 69.8
TRIDC1BG035360 Triticum dicoccoides HOM05M004474 ORTHO05M005474 8.8e-142 506.5 410 69.8
Zjn_sc00064.1.g00690.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM05M004474 ORTHO05M005474 2.0e-141 505.4 391 72.9
Bradi3g34517 Brachypodium distachyon HOM05M004474 ORTHO05M005474 2.6e-141 505.0 410 69.8
GWHGASIY002456 Secale cereale HOM05M004474 ORTHO05M005474 2.6e-141 505.0 410 69.5
GWHGASIY020690 Secale cereale HOM05M004474 ORTHO05M005474 2.6e-141 505.0 410 69.5
PH02Gene33918 Phyllostachys edulis HOM05M004474 ORTHO05M005474 3.4e-141 504.6 410 69.3
Sspon.01G0015410-1A Saccharum spontaneum HOM05M004474 ORTHO05M005474 5.7e-141 503.8 410 70.5
Ot_Chr1_g20172 Oropetium thomaeum HOM05M004474 ORTHO05M005474 1.4e-139 499.2 410 68.3
V3.Lp_chr1_0G11974 Lolium perenne HOM05M004474 ORTHO05M005474 7.0e-139 496.9 410 68.3
Sspon.01G0015410-3D Saccharum spontaneum HOM05M004474 ORTHO05M005474 2.7e-138 495.0 372 72.0
Sspon.01G0015410-2B Saccharum spontaneum HOM05M004474 ORTHO05M005474 1.0e-137 493.0 372 71.8
Misin01G262800 Miscanthus sinensis HOM05M004474 ORTHO05M005474 2.2e-132 475.3 411 64.7
Misin02G259000 Miscanthus sinensis HOM05M004474 ORTHO05M005474 2.2e-132 475.3 411 65.0
Zm00007a00000088 Zea mays B104 HOM05M004474 ORTHO05M005474 3.1e-131 471.5 437 63.4
V3.Lp_chr1_0G11978 Lolium perenne HOM05M004474 ORTHO05M005474 7.7e-130 466.8 410 64.9
Ma06_g36400 Musa acuminata HOM05M004474 ORTHO05M005474 8.6e-129 463.4 410 63.7
Aco017000 Ananas comosus HOM05M004474 ORTHO05M005474 1.5e-128 462.6 410 63.4
TraesCS1D03G0509100 Triticum aestivum HOM05M004474 ORTHO05M005474 7.3e-128 460.3 410 64.6
Asa6G05574 Allium sativum HOM05M004474 ORTHO05M005474 9.5e-128 459.9 410 62.9
evm.TU.AsparagusV1_04.969.V1.1 Asparagus officinalis HOM05M004474 ORTHO05M005474 1.6e-127 459.1 410 63.2
Sobic.001G283100 Sorghum bicolor HOM05M004474 ORTHO05M005474 4.7e-127 457.6 449 59.7
TRITD1Bv1G124440 Triticum turgidum HOM05M004474 ORTHO05M005474 1.4e-126 456.1 410 64.4
CALSI_Maker00008278 Calamus simplicifolius HOM05M004474 ORTHO05M005474 5.2e-126 454.1 407 62.9
DDU612G0070 Dioscorea dumetorum HOM05M004474 ORTHO05M005474 2.0e-125 452.2 410 62.9
AT1G32080 Arabidopsis thaliana HOM05M004474 ORTHO05M005474 2.6e-125 451.8 410 62.0
MBI04_g36023_MAGBIO Magnolia biondii HOM05M004474 ORTHO05M005474 1.7e-124 449.1 410 62.2
p5.00_sc00002_p0048 Elaeis guineensis HOM05M004474 ORTHO05M005474 2.9e-124 448.4 407 62.2
Glyma.16G095100 Glycine max HOM05M004474 ORTHO05M005474 2.9e-124 448.4 410 61.5
Solyc08g076290.3 Solanum lycopersicum HOM05M004474 ORTHO05M005474 3.7e-124 448.0 410 62.0
Potri.003G099600 Populus trichocarpa HOM05M004474 ORTHO05M005474 4.9e-124 447.6 410 62.2
Spipo11G0012500 Spirodela polyrhiza HOM05M004474 ORTHO05M005474 4.9e-124 447.6 410 62.0
ATR0829G037 Amborella trichopoda HOM05M004474 ORTHO05M005474 9.2e-123 443.4 409 62.1
CDE06G0533 Ceratophyllum demersum HOM05M004474 ORTHO05M005474 1.7e-121 439.1 410 61.2
p5.00_sc00075_p0037 Elaeis guineensis HOM05M004474 ORTHO05M005474 2.3e-121 438.7 410 60.7
Zosma06g02350 Zostera marina HOM05M004474 ORTHO05M005474 1.1e-120 436.4 410 60.2
GWHGAZTO009998 Oryza alta HOM05M004474 ORTHO05M005474 9.5e-120 433.3 395 62.5
Glyma.01G009900 Glycine max HOM05M004474 ORTHO05M005474 1.9e-115 419.1 410 57.8
Sspon.01G0015410-1P Saccharum spontaneum HOM05M004474 ORTHO05M005474 2.4e-115 418.7 365 67.7
Glyma.09G211200 Glycine max HOM05M004474 ORTHO05M005474 7.8e-114 413.7 410 57.6
Dexi9B01G0026660 Digitaria exilis HOM05M004474 ORTHO05M005474 1.6e-106 389.4 348 69.0
Dexi9A01G0027740 Digitaria exilis HOM05M004474 ORTHO05M005474 7.3e-96 354.0 348 64.7
AagrBONN_evm.TU.Sc2ySwM_117.3701 Anthoceros agrestis HOM05M004474 ORTHO05M005474 3.6e-95 351.7 409 49.4
Mapoly0008s0007 Marchantia polymorpha HOM05M004474 ORTHO05M005474 8.1e-95 350.5 409 51.3
Pp3c1_16500 Physcomitrium patens HOM05M004474 ORTHO05M005474 4.4e-93 344.7 409 49.6
OsKitaake10g206300 Oryza sativa Kitaake HOM05M004474 ORTHO05M005474 2.4e-91 339.0 328 60.1
GWHGAZTO002999 Oryza alta HOM05M004474 ORTHO05M005474 1.1e-78 297.0 175 85.1
OsR498G0101103600.01 Oryza sativa ssp. indica HOM05M004474 ORTHO05M005474 5.3e-78 294.7 175 84.6
SMO347G0341 Selaginella moellendorffii HOM05M004474 ORTHO05M005474 1.6e-74 283.1 359 48.5
Zm00001eb025140 Zea mays B73 HOM05M004474 ORTHO05M005474 4.3e-72 275.0 176 80.7
PH02Gene20617 Phyllostachys edulis HOM05M004474 ORTHO05M005474 5.5e-67 258.1 153 89.5
PRCOL_00000663 Prasinoderma coloniale HOM05M004474 ORTHO05M005474 7.4e-64 247.7 409 39.1
Spipo30G0006000 Spirodela polyrhiza HOM05M004474 ORTHO05M005474 1.7e-60 236.5 169 71.0
CBR_g23155 Chara braunii HOM05M004474 ORTHO05M005474 2.7e-50 202.6 152 68.4
Glyma.08G265967 Glycine max HOM05M004474 ORTHO05M005474 5.1e-49 198.4 132 79.5
Cre09.g394850 Chlamydomonas reinhardtii HOM05M004474 ORTHO05M005474 7.7e-45 184.5 406 34.0
SMO367G1009 Selaginella moellendorffii HOM05M004474 ORTHO05M005474 7.0e-38 161.4 386 30.6
Pp3c4_7680 Physcomitrium patens HOM05M004474 ORTHO05M005474 2.3e-33 146.4 397 27.7
AagrBONN_evm.TU.Sc2ySwM_368.2516 Anthoceros agrestis HOM05M004474 ORTHO05M005474 2.0e-29 133.3 352 30.4
PRCOL_00006607 Prasinoderma coloniale HOM05M004474 ORTHO05M005474 2.9e-28 129.4 445 29.7
SEGI_28661 Sequoiadendron giganteum HOM05M004474 ORTHO05M005474 7.2e-27 124.8 90 71.1
CBR_g23153 Chara braunii HOM05M004474 ORTHO05M005474 9.8e-24 114.4 93 60.2
SEGI_09610 Sequoiadendron giganteum HOM05M004474 ORTHO05M005474 2.8e-23 112.8 82 67.1
GWHGAZTO062235 Oryza alta HOM05M004474 ORTHO05M005474 3.1e-22 109.4 136 51.5
CDE03G0049 Ceratophyllum demersum HOM05M004474 ORTHO05M005474 1.7e-12 77.0 67 65.7
Asa4G02944 Allium sativum HOM05M004474 ORTHO05M005474 3.8e-12 75.9 106 47.2
MCO13G610 Micromonas commoda HOM05M004474 ORTHO05M005474 5.2e-09 65.5 177 32.2
PRCOL_00001036 Prasinoderma coloniale HOM05M000841 ORTHO05M013727 4.9e-07 58.9 162 26.5


User provided reference genes

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