Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zjn_sc00064.1.g00690.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM05M004474 ORTHO05M005474 2.2e-211 738.0 391 100.0
Pahal.9G367400 Panicum hallii HOM05M004474 ORTHO05M005474 1.5e-183 645.6 405 85.4
Seita.9G306500 Setaria italica HOM05M004474 ORTHO05M005474 3.7e-179 630.9 405 84.2
Sevir.9G312000 Setaria viridis HOM05M004474 ORTHO05M005474 3.7e-179 630.9 405 84.2
Sobic.001G283000 Sorghum bicolor HOM05M004474 ORTHO05M005474 8.3e-179 629.8 406 84.2
GWHGAZTO055419 Oryza alta HOM05M004474 ORTHO05M005474 7.0e-178 626.7 405 83.5
GWHGAORA028512 Cenchrus purpureus HOM05M004474 ORTHO05M005474 9.2e-178 626.3 405 83.7
OsKitaake01g184500 Oryza sativa Kitaake HOM05M004474 ORTHO05M005474 2.0e-177 625.2 405 83.0
Os01g0511600 Oryza sativa ssp. japonica HOM05M004474 ORTHO05M005474 2.0e-177 625.2 405 83.0
OB01G27090 Oryza brachyantha HOM05M004474 ORTHO05M005474 4.5e-177 624.0 405 83.0
Zm00001eb025160 Zea mays B73 HOM05M004474 ORTHO05M005474 7.8e-177 623.2 405 83.5
Zm00007a00015904 Zea mays B104 HOM05M004474 ORTHO05M005474 6.6e-176 620.2 403 83.4
Ot_Chr1_g20172 Oropetium thomaeum HOM05M004474 ORTHO05M005474 3.3e-175 617.8 405 81.7
Misin01G262700 Miscanthus sinensis HOM05M004474 ORTHO05M005474 1.6e-174 615.5 407 82.8
Sspon.01G0015410-1A Saccharum spontaneum HOM05M004474 ORTHO05M005474 1.6e-174 615.5 405 82.7
GWHGAORA052653 Cenchrus purpureus HOM05M004474 ORTHO05M005474 2.1e-174 615.1 418 80.9
AET1Gv20509100 Aegilops tauschii HOM05M004474 ORTHO05M005474 1.0e-173 612.8 405 81.2
TraesCS1A03G0528100 Triticum aestivum HOM05M004474 ORTHO05M005474 1.0e-173 612.8 405 81.2
TRIDC1AG029870 Triticum dicoccoides HOM05M004474 ORTHO05M005474 1.0e-173 612.8 405 81.2
TRITD1Av1G128930 Triticum turgidum HOM05M004474 ORTHO05M005474 1.0e-173 612.8 405 81.2
GWHGASIY002456 Secale cereale HOM05M004474 ORTHO05M005474 1.8e-173 612.1 405 81.5
GWHGASIY020690 Secale cereale HOM05M004474 ORTHO05M005474 1.8e-173 612.1 405 81.5
Bradi3g34517 Brachypodium distachyon HOM05M004474 ORTHO05M005474 1.2e-172 609.4 405 81.7
Misin02G258900 Miscanthus sinensis HOM05M004474 ORTHO05M005474 1.2e-172 609.4 406 82.5
PH02Gene33918 Phyllostachys edulis HOM05M004474 ORTHO05M005474 1.2e-172 609.4 405 80.7
TraesCS1B03G0617500 Triticum aestivum HOM05M004474 ORTHO05M005474 2.6e-172 608.2 405 81.0
TRIDC1BG035360 Triticum dicoccoides HOM05M004474 ORTHO05M005474 2.6e-172 608.2 405 81.0
Horvu_MOREX_1H01G322600 Hordeum vulgare HOM05M004474 ORTHO05M005474 7.5e-172 606.7 405 80.5
V3.Lp_chr1_0G11974 Lolium perenne HOM05M004474 ORTHO05M005474 1.4e-170 602.4 405 80.0
Zm00007a00000088 Zea mays B104 HOM05M004474 ORTHO05M005474 3.0e-168 594.7 430 75.8
Misin01G262800 Miscanthus sinensis HOM05M004474 ORTHO05M005474 2.8e-166 588.2 406 76.4
Misin02G259000 Miscanthus sinensis HOM05M004474 ORTHO05M005474 2.8e-166 588.2 406 76.6
Sobic.001G283100 Sorghum bicolor HOM05M004474 ORTHO05M005474 3.2e-162 574.7 444 70.7
Ma06_g36400 Musa acuminata HOM05M004474 ORTHO05M005474 6.6e-160 567.0 405 74.8
TraesCS1D03G0509100 Triticum aestivum HOM05M004474 ORTHO05M005474 7.3e-159 563.5 405 76.0
evm.TU.AsparagusV1_04.969.V1.1 Asparagus officinalis HOM05M004474 ORTHO05M005474 4.7e-158 560.8 404 74.3
Asa6G05574 Allium sativum HOM05M004474 ORTHO05M005474 6.2e-158 560.5 404 73.8
V3.Lp_chr1_0G11978 Lolium perenne HOM05M004474 ORTHO05M005474 1.1e-157 559.7 405 75.3
TRITD1Bv1G124440 Triticum turgidum HOM05M004474 ORTHO05M005474 1.8e-157 558.9 405 75.8
Aco017000 Ananas comosus HOM05M004474 ORTHO05M005474 1.7e-155 552.4 405 72.6
DDU612G0070 Dioscorea dumetorum HOM05M004474 ORTHO05M005474 2.1e-153 545.4 405 72.1
EJB05_23207 Eragrostis curvula HOM05M004474 ORTHO05M005474 2.1e-153 545.4 394 76.1
Solyc08g076290.3 Solanum lycopersicum HOM05M004474 ORTHO05M005474 6.0e-153 543.9 405 71.6
CALSI_Maker00008278 Calamus simplicifolius HOM05M004474 ORTHO05M005474 1.0e-152 543.1 402 71.4
Potri.003G099600 Populus trichocarpa HOM05M004474 ORTHO05M005474 1.3e-152 542.7 405 72.3
Spipo11G0012500 Spirodela polyrhiza HOM05M004474 ORTHO05M005474 1.3e-152 542.7 405 72.6
GWHGAZTO009998 Oryza alta HOM05M004474 ORTHO05M005474 3.0e-152 541.6 390 74.9
CDE06G0533 Ceratophyllum demersum HOM05M004474 ORTHO05M005474 3.6e-150 534.6 405 71.1
MBI04_g36023_MAGBIO Magnolia biondii HOM05M004474 ORTHO05M005474 6.2e-150 533.9 405 71.6
AT1G32080 Arabidopsis thaliana HOM05M004474 ORTHO05M005474 8.1e-150 533.5 404 70.3
p5.00_sc00002_p0048 Elaeis guineensis HOM05M004474 ORTHO05M005474 1.1e-149 533.1 402 70.1
Glyma.16G095100 Glycine max HOM05M004474 ORTHO05M005474 1.1e-149 533.1 405 71.1
Sspon.01G0015410-1P Saccharum spontaneum HOM05M004474 ORTHO05M005474 1.1e-149 533.1 360 81.4
ATR0829G037 Amborella trichopoda HOM05M004474 ORTHO05M005474 2.4e-149 531.9 403 71.0
p5.00_sc00075_p0037 Elaeis guineensis HOM05M004474 ORTHO05M005474 3.4e-148 528.1 405 69.6
Zosma06g02350 Zostera marina HOM05M004474 ORTHO05M005474 1.4e-146 522.7 405 69.9
Sspon.01G0015410-2B Saccharum spontaneum HOM05M004474 ORTHO05M005474 1.9e-146 522.3 392 71.9
Sspon.01G0015410-3D Saccharum spontaneum HOM05M004474 ORTHO05M005474 1.9e-146 522.3 392 71.9
Zjn_sc00064.1.g00710.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM05M004474 ORTHO05M005474 4.8e-142 507.7 391 72.9
Glyma.01G009900 Glycine max HOM05M004474 ORTHO05M005474 2.6e-140 501.9 403 66.0
Glyma.09G211200 Glycine max HOM05M004474 ORTHO05M005474 9.3e-138 493.4 403 65.3
Dexi9B01G0026660 Digitaria exilis HOM05M004474 ORTHO05M005474 2.4e-130 468.8 405 67.7
AagrBONN_evm.TU.Sc2ySwM_117.3701 Anthoceros agrestis HOM05M004474 ORTHO05M005474 1.6e-121 439.5 404 59.2
Dexi9A01G0027740 Digitaria exilis HOM05M004474 ORTHO05M005474 5.7e-119 431.0 405 64.2
Mapoly0008s0007 Marchantia polymorpha HOM05M004474 ORTHO05M005474 2.8e-118 428.7 403 57.8
Pp3c1_16500 Physcomitrium patens HOM05M004474 ORTHO05M005474 1.3e-115 419.9 404 56.2
OsKitaake10g206300 Oryza sativa Kitaake HOM05M004474 ORTHO05M005474 1.1e-109 400.2 354 64.1
GWHGAZTO002999 Oryza alta HOM05M004474 ORTHO05M005474 3.6e-105 385.2 246 80.5
SMO347G0341 Selaginella moellendorffii HOM05M004474 ORTHO05M005474 6.5e-99 364.4 354 58.5
PH02Gene20617 Phyllostachys edulis HOM05M004474 ORTHO05M005474 3.1e-93 345.5 235 80.9
PRCOL_00000663 Prasinoderma coloniale HOM05M004474 ORTHO05M005474 8.8e-88 327.4 406 47.8
Spipo30G0006000 Spirodela polyrhiza HOM05M004474 ORTHO05M005474 1.1e-87 327.0 264 66.3
OsR498G0101103600.01 Oryza sativa ssp. indica HOM05M004474 ORTHO05M005474 9.4e-74 280.8 172 83.1
Zm00001eb025140 Zea mays B73 HOM05M004474 ORTHO05M005474 6.3e-70 268.1 173 80.3
Cre09.g394850 Chlamydomonas reinhardtii HOM05M004474 ORTHO05M005474 1.5e-63 246.9 406 40.1
SMO367G1009 Selaginella moellendorffii HOM05M004474 ORTHO05M005474 2.4e-61 239.6 388 36.6
Pp3c4_7680 Physcomitrium patens HOM05M004474 ORTHO05M005474 8.0e-57 224.6 399 35.1
AagrBONN_evm.TU.Sc2ySwM_368.2516 Anthoceros agrestis HOM05M004474 ORTHO05M005474 8.9e-56 221.1 349 41.8
Glyma.08G265967 Glycine max HOM05M004474 ORTHO05M005474 1.1e-53 214.2 171 70.8
PRCOL_00006607 Prasinoderma coloniale HOM05M004474 ORTHO05M005474 1.8e-48 196.8 443 35.9
CBR_g23155 Chara braunii HOM05M004474 ORTHO05M005474 9.8e-47 191.0 154 64.3
SEGI_09610 Sequoiadendron giganteum HOM05M004474 ORTHO05M005474 4.4e-39 165.6 136 61.0
GWHGAZTO062235 Oryza alta HOM05M004474 ORTHO05M005474 1.7e-27 127.1 249 39.4
SEGI_28661 Sequoiadendron giganteum HOM05M004474 ORTHO05M005474 3.4e-23 112.8 83 68.7
CBR_g23153 Chara braunii HOM05M004474 ORTHO05M005474 3.8e-22 109.4 86 61.6
CDE03G0049 Ceratophyllum demersum HOM05M004474 ORTHO05M005474 1.0e-11 74.7 67 64.2
MCO13G610 Micromonas commoda HOM05M004474 ORTHO05M005474 3.3e-10 69.7 415 23.4
Asa4G02944 Allium sativum HOM05M004474 ORTHO05M005474 4.3e-10 69.3 91 47.3
PRCOL_00001036 Prasinoderma coloniale HOM05M000841 ORTHO05M013727 1.7e-06 57.4 413 23.7


User provided reference genes

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