Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zjn_sc00047.1.g03040.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M000441 ORTHO05M000342 9.8e-115 416.0 203 100.0
EJB05_24833 Eragrostis curvula HOM05M000441 ORTHO05M000342 7.4e-22 107.5 123 52.8
Dexi1A01G0009220 Digitaria exilis HOM05M000441 ORTHO05M000342 6.3e-21 104.4 109 55.0
EJB05_24870 Eragrostis curvula HOM05M000441 ORTHO05M000342 2.4e-20 102.4 139 48.9
Dexi1A01G0009200 Digitaria exilis HOM05M000441 ORTHO05M000342 5.9e-19 97.8 103 54.4
Zjn_sc00047.1.g03090.1.am.mk Zoysia japonica ssp. nagirizaki HOM05M000441 ORTHO05M000342 5.0e-18 94.7 112 50.9
EJB05_24858 Eragrostis curvula HOM05M000441 ORTHO05M000342 4.2e-17 91.7 136 46.3
EJB05_24855 Eragrostis curvula HOM05M000441 ORTHO05M000342 9.4e-17 90.5 113 47.8
Sevir.1G036100 Setaria viridis HOM05M000441 ORTHO05M000342 9.4e-17 90.5 107 50.5
Pahal.1G087800 Panicum hallii HOM05M000441 ORTHO05M000342 6.1e-16 87.8 92 55.4
GWHGAORA058890 Cenchrus purpureus HOM05M000441 ORTHO05M000342 2.3e-15 85.9 109 48.6
EJB05_24861 Eragrostis curvula HOM05M000441 ORTHO05M000342 6.7e-15 84.3 93 54.8
EJB05_24834 Eragrostis curvula HOM05M000441 ORTHO05M000342 8.8e-15 84.0 128 44.5
EJB05_24869 Eragrostis curvula HOM05M000441 ORTHO05M000342 8.8e-15 84.0 128 44.5
EJB05_24852 Eragrostis curvula HOM05M000441 ORTHO05M000342 3.3e-14 82.0 93 52.7
EJB05_24832 Eragrostis curvula HOM05M000441 ORTHO05M000342 4.4e-14 81.6 97 48.5
EJB05_24868 Eragrostis curvula HOM05M000441 ORTHO05M000342 4.4e-14 81.6 97 48.5
Seita.1G035500 Setaria italica HOM05M000441 ORTHO05M000342 4.4e-14 81.6 105 50.5
Seita.1G036700 Setaria italica HOM05M000441 ORTHO05M000342 4.4e-14 81.6 97 48.5
Sevir.1G036284 Setaria viridis HOM05M000441 ORTHO05M000342 4.4e-14 81.6 97 48.5
Dexi1A01G0009180 Digitaria exilis HOM05M000441 ORTHO05M000342 9.7e-14 80.5 93 53.8
Pahal.1G087300 Panicum hallii HOM05M000441 ORTHO05M000342 3.7e-13 78.6 97 45.4
EJB05_24854 Eragrostis curvula HOM05M000441 ORTHO05M000342 4.8e-13 78.2 110 46.4
Dexi1B01G0008870 Digitaria exilis HOM05M000441 ORTHO05M000342 6.3e-13 77.8 97 46.4
Misin08G082400 Miscanthus sinensis HOM05M000441 ORTHO05M000342 6.3e-13 77.8 73 58.9
Seita.1G035900 Setaria italica HOM05M000441 ORTHO05M000342 6.3e-13 77.8 85 51.8
Sevir.1G036192 Setaria viridis HOM05M000441 ORTHO05M000342 1.1e-12 77.0 101 48.5
Dexi1A01G0009160 Digitaria exilis HOM05M000441 ORTHO05M000342 7.0e-12 74.3 93 48.4
Sspon.04G0033620-1C Saccharum spontaneum HOM05M000441 ORTHO05M000342 7.0e-12 74.3 82 50.0
Misin08G083100 Miscanthus sinensis HOM05M000441 ORTHO05M000342 1.2e-11 73.6 84 52.4
OsR498G0203221200.01 Oryza sativa ssp. indica HOM05M000441 ORTHO05M000342 2.0e-11 72.8 99 49.5
Dexi1A01G0008830 Digitaria exilis HOM05M000441 ORTHO05M000342 3.5e-11 72.0 81 53.1
Dexi1B01G0008470 Digitaria exilis HOM05M000441 ORTHO05M000342 4.5e-11 71.6 81 51.9
Misin08G083700 Miscanthus sinensis HOM05M000441 ORTHO05M000342 4.5e-11 71.6 82 52.4
Seita.1G036100 Setaria italica HOM05M000441 ORTHO05M000342 4.5e-11 71.6 93 46.2
Misin07G091500 Miscanthus sinensis HOM05M000441 ORTHO05M000342 3.8e-10 68.6 85 45.9
Misin08G082600 Miscanthus sinensis HOM05M000441 ORTHO05M000342 8.5e-10 67.4 84 48.8
GWHGAORA015828 Cenchrus purpureus HOM05M000441 ORTHO05M000342 1.1e-09 67.0 93 45.2
Misin08G083300 Miscanthus sinensis HOM05M000441 ORTHO05M000342 1.9e-09 66.2 65 53.8
Ot_Chr1_g18898 Oropetium thomaeum HOM05M000441 ORTHO05M000342 2.5e-09 65.9 93 46.2
EJB05_41334 Eragrostis curvula HOM05M000441 ORTHO05M000342 3.2e-09 65.5 117 39.3
OsKitaake02g089900 Oryza sativa Kitaake HOM05M000441 ORTHO05M000342 4.2e-09 65.1 97 44.3
Os02g0216300 Oryza sativa ssp. japonica HOM05M000441 ORTHO05M000342 4.2e-09 65.1 97 44.3
Zm00001eb205270 Zea mays B73 HOM05M000441 ORTHO05M000342 4.2e-09 65.1 98 48.0
EJB05_41351 Eragrostis curvula HOM05M000236 ORTHO05M000342 7.2e-09 64.3 73 47.9
Misin08G083200 Miscanthus sinensis HOM05M000441 ORTHO05M000342 9.4e-09 63.9 57 59.6
Dexi1A01G0008810 Digitaria exilis HOM05M000441 ORTHO05M000342 1.2e-08 63.5 71 49.3
Zjn_sc00045.1.g00630.1.am.mk Zoysia japonica ssp. nagirizaki HOM05M000441 ORTHO05M000342 2.7e-08 62.4 71 47.9
GWHGAORA056834 Cenchrus purpureus HOM05M000441 ORTHO05M000342 6.1e-08 61.2 71 47.9
Zjn_sc00045.1.g00650.1.sm.mk Zoysia japonica ssp. nagirizaki HOM05M000441 ORTHO05M000342 1.0e-07 60.5 93 41.9
GWHGAORA056839 Cenchrus purpureus HOM05M000441 ORTHO05M000342 2.3e-07 59.3 73 45.2
GWHGAZTO068892 Oryza alta HOM05M000441 ORTHO05M000342 2.3e-07 59.3 98 42.9
Seita.1G035400 Setaria italica HOM05M000441 ORTHO05M000342 2.3e-07 59.3 103 44.7
Sevir.1G036000 Setaria viridis HOM05M000441 ORTHO05M000342 4.0e-07 58.5 105 39.0
PH02Gene46135 Phyllostachys edulis HOM05M000441 ORTHO05M009239 5.2e-07 58.2 71 45.1
Dexi1B01G0007240 Digitaria exilis HOM05M000441 ORTHO05M000342 8.8e-07 57.4 91 37.4
GWHGASIY040022 Secale cereale HOM05M000441 ORTHO05M000342 8.8e-07 57.4 71 47.9
TraesCS7B03G0722800 Triticum aestivum HOM05M000441 ORTHO05M000342 8.8e-07 57.4 71 46.5
TRITD7Bv1G147870 Triticum turgidum HOM05M000441 ORTHO05M000342 8.8e-07 57.4 71 46.5
AET7Gv20890200 Aegilops tauschii HOM05M000441 ORTHO05M000342 1.2e-06 57.0 71 46.5
TraesCS7D03G0846200 Triticum aestivum HOM05M000441 ORTHO05M000342 1.2e-06 57.0 71 46.5
TRIDC7BG042920 Triticum dicoccoides HOM05M000441 ORTHO05M000342 1.2e-06 57.0 71 46.5
Aco009880 Ananas comosus HOM05M000441 ORTHO05M000342 1.5e-06 56.6 88 42.0
TraesCS7A03G0890400 Triticum aestivum HOM05M000441 ORTHO05M000342 2.6e-06 55.8 71 46.5
TRIDC7AG050920 Triticum dicoccoides HOM05M000441 ORTHO05M000342 2.6e-06 55.8 71 46.5
GWHGAORA058858 Cenchrus purpureus HOM05M000441 ORTHO05M000342 3.4e-06 55.5 90 43.3
Dexi1A01G0009230 Digitaria exilis HOM05M000441 ORTHO05M000342 3.4e-06 55.5 86 43.0
Pahal.1G088033 Panicum hallii HOM05M000441 ORTHO05M000342 3.4e-06 55.5 79 41.8
Misin07G091800 Miscanthus sinensis HOM05M000441 ORTHO05M000342 4.4e-06 55.1 84 47.6
OB06G26910 Oryza brachyantha HOM05M000441 ORTHO05M000342 4.4e-06 55.1 71 46.5
Misin08G082200 Miscanthus sinensis HOM05M000441 ORTHO05M000342 5.7e-06 54.7 77 45.5
OsKitaake06g195200 Oryza sativa Kitaake HOM05M000441 ORTHO05M000342 5.7e-06 54.7 71 42.3
TraesCS1B03G0299900 Triticum aestivum HOM05M000441 ORTHO05M000342 5.7e-06 54.7 73 45.2
Horvu_MOREX_7H01G502100 Hordeum vulgare HOM05M000441 ORTHO05M000342 7.5e-06 54.3 71 43.7


User provided reference genes

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