Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zjn_sc00037.1.g03030.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM05M002523 ORTHO05M002762 5.5e-103 377.1 221 100.0
Sspon.04G0009540-1A Saccharum spontaneum HOM05M002523 ORTHO05M002762 7.8e-41 170.6 232 59.9
Sspon.04G0009540-3D Saccharum spontaneum HOM05M002523 ORTHO05M002762 2.3e-40 169.1 232 59.9
Sspon.04G0009540-2C Saccharum spontaneum HOM05M002523 ORTHO05M002762 8.6e-40 167.2 232 59.9
Sevir.1G215300 Setaria viridis HOM05M002523 ORTHO05M002762 6.2e-38 161.0 224 58.5
Dexi1B01G0017290 Digitaria exilis HOM05M002523 ORTHO05M002762 4.0e-37 158.3 195 51.8
PH02Gene25978 Phyllostachys edulis HOM05M002523 ORTHO05M002762 8.9e-37 157.1 222 51.8
V3.Lp_chr4_0G19990 Lolium perenne HOM05M002523 ORTHO05M002762 1.5e-36 156.4 222 48.2
Misin08G180800 Miscanthus sinensis HOM05M002523 ORTHO05M002762 2.6e-36 155.6 232 56.5
Dexi1A01G0018600 Digitaria exilis HOM05M002523 ORTHO05M002762 7.5e-36 154.1 198 54.0
Horvu_MOREX_6H01G305600 Hordeum vulgare HOM05M002523 ORTHO05M002762 7.5e-36 154.1 218 58.3
Ot_Chr1_g02587 Oropetium thomaeum HOM05M002523 ORTHO05M002762 4.9e-35 151.4 224 48.7
EJB05_21080 Eragrostis curvula HOM05M002523 ORTHO05M002762 4.1e-34 148.3 221 57.5
TRIDC6AG031980 Triticum dicoccoides HOM05M002523 ORTHO05M002762 9.2e-34 147.1 186 62.4
AET6Gv20508800 Aegilops tauschii HOM05M002523 ORTHO05M002762 1.2e-33 146.7 219 55.7
TraesCS6D03G0465000 Triticum aestivum HOM05M002523 ORTHO05M002762 1.2e-33 146.7 219 55.7
Sobic.004G195000 Sorghum bicolor HOM05M002523 ORTHO05M002762 3.5e-33 145.2 222 55.0
Pahal.1G284500 Panicum hallii HOM05M002523 ORTHO05M002762 6.0e-33 144.4 194 58.8
Bradi3g47170 Brachypodium distachyon HOM05M002523 ORTHO05M002762 2.8e-30 135.6 202 57.4
OsKitaake02g223100 Oryza sativa Kitaake HOM05M002523 ORTHO05M002762 6.2e-30 134.4 255 50.6
OsR498G0204188600.01 Oryza sativa ssp. indica HOM05M002523 ORTHO05M002762 6.2e-30 134.4 255 50.6
Os02g0582600 Oryza sativa ssp. japonica HOM05M002523 ORTHO05M002762 6.2e-30 134.4 255 50.6
GWHGAZTO019234 Oryza alta HOM05M002523 ORTHO05M002762 3.1e-29 132.1 241 50.6
Misin07G385300 Miscanthus sinensis HOM05M002523 ORTHO05M002762 1.2e-25 120.2 137 57.7
Seita.1G211700 Setaria italica HOM05M002523 ORTHO05M002762 1.0e-24 117.1 121 62.0
OB02G29600 Oryza brachyantha HOM05M002523 ORTHO05M002762 1.5e-23 113.2 234 39.3
GWHGAZTO070842 Oryza alta HOM05M002523 ORTHO05M002762 1.6e-22 109.8 226 47.8
Sobic.006G112900 Sorghum bicolor HOM05M002523 ORTHO05M002762 1.8e-21 106.3 248 37.9
Misin11G107900 Miscanthus sinensis HOM05M002523 ORTHO05M002762 3.1e-21 105.5 242 36.0
TRITD6Av1G125830 Triticum turgidum HOM05M002523 ORTHO05M002762 3.1e-21 105.5 137 53.3
TraesCS2A03G0816300 Triticum aestivum HOM05M002523 ORTHO05M002762 5.2e-21 104.8 197 39.1
TRITD2Av1G201780 Triticum turgidum HOM05M002523 ORTHO05M002762 5.2e-21 104.8 197 39.1
GWHGASIY009259 Secale cereale HOM05M002523 ORTHO05M002762 8.9e-21 104.0 197 38.6
AET2Gv20745900 Aegilops tauschii HOM05M002523 ORTHO05M002762 1.2e-20 103.6 197 39.1
Horvu_MOREX_2H01G488500 Hordeum vulgare HOM05M002523 ORTHO05M002762 3.4e-20 102.1 205 40.0
GWHGAORA061957 Cenchrus purpureus HOM05M002523 ORTHO05M002762 4.4e-20 101.7 197 39.1
PH02Gene04001 Phyllostachys edulis HOM05M002523 ORTHO05M002762 4.4e-20 101.7 264 34.8
OB04G22840 Oryza brachyantha HOM05M002523 ORTHO05M002762 9.9e-20 100.5 233 36.1
OsKitaake04g161200 Oryza sativa Kitaake HOM05M002523 ORTHO05M002762 9.9e-20 100.5 216 39.8
TraesCS2D03G0756900 Triticum aestivum HOM05M002523 ORTHO05M002762 9.9e-20 100.5 197 38.6
Bradi5g12916 Brachypodium distachyon HOM05M002523 ORTHO05M002762 3.8e-19 98.6 206 39.3
GWHGASIY009256 Secale cereale HOM05M002523 ORTHO05M002762 4.9e-19 98.2 207 37.7
GWHGAZTO079699 Oryza alta HOM05M002523 ORTHO05M002762 1.1e-18 97.1 221 36.7
TRITD2Bv1G164800 Triticum turgidum HOM05M002523 ORTHO05M002762 4.2e-18 95.1 186 37.6
PH02Gene04002 Phyllostachys edulis HOM05M002523 ORTHO05M002762 1.2e-17 93.6 98 55.1
Pahal.7G184000 Panicum hallii HOM05M002523 ORTHO05M002762 1.6e-17 93.2 229 34.9
GWHGAZTO030019 Oryza alta HOM05M002523 ORTHO05M002762 2.1e-17 92.8 219 36.1
GWHGASIY009255 Secale cereale HOM05M002523 ORTHO05M002762 7.8e-17 90.9 92 55.4
Pahal.7G184100 Panicum hallii HOM05M002523 ORTHO05M002762 1.7e-16 89.7 84 57.1
PH02Gene44566 Phyllostachys edulis HOM05M002523 ORTHO05M002762 1.7e-16 89.7 132 47.7
GWHGASIY009260 Secale cereale HOM05M002523 ORTHO05M002762 1.7e-16 89.7 92 54.3
Seita.7G130300 Setaria italica HOM05M002523 ORTHO05M002762 1.7e-16 89.7 84 58.3
Sevir.7G138900 Setaria viridis HOM05M002523 ORTHO05M002762 1.7e-16 89.7 84 58.3
GWHGAORA061958 Cenchrus purpureus HOM05M002523 ORTHO05M002762 2.3e-16 89.4 124 47.6
Dexi7A01G0009320 Digitaria exilis HOM05M002523 ORTHO05M002762 2.3e-16 89.4 217 35.5
Horvu_MOREX_2H01G488600 Hordeum vulgare HOM05M002523 ORTHO05M002762 3.0e-16 89.0 92 54.3
Sspon.05G0025260-2C Saccharum spontaneum HOM05M002523 ORTHO05M002762 3.0e-16 89.0 120 45.8
TraesCS2A03G0816500 Triticum aestivum HOM05M002523 ORTHO05M002762 3.0e-16 89.0 92 54.3
TRIDC2AG048320 Triticum dicoccoides HOM05M002523 ORTHO05M002762 3.0e-16 89.0 92 54.3
TRITD2Av1G201840 Triticum turgidum HOM05M002523 ORTHO05M002762 3.0e-16 89.0 92 54.3
GWHGAORA022656 Cenchrus purpureus HOM05M002523 ORTHO05M002762 3.9e-16 88.6 133 43.6
GWHGAZTO079701 Oryza alta HOM05M002523 ORTHO05M002762 3.9e-16 88.6 124 50.0
PH02Gene16342 Phyllostachys edulis HOM05M002523 ORTHO05M002762 3.9e-16 88.6 122 47.5
AET2Gv20746000 Aegilops tauschii HOM05M002523 ORTHO05M002762 5.1e-16 88.2 92 54.3
EJB05_37559 Eragrostis curvula HOM05M002523 ORTHO05M002762 5.1e-16 88.2 85 60.0
TraesCS2D03G0757000 Triticum aestivum HOM05M002523 ORTHO05M002762 5.1e-16 88.2 92 54.3
Sspon.05G0025260-1B Saccharum spontaneum HOM05M002523 ORTHO05M002762 6.6e-16 87.8 130 44.6
TraesCS2B03G0901500 Triticum aestivum HOM05M002523 ORTHO05M002762 6.6e-16 87.8 92 53.3
TRIDC2BG050750 Triticum dicoccoides HOM05M002523 ORTHO05M002762 6.6e-16 87.8 92 53.3
TRITD2Bv1G164830 Triticum turgidum HOM05M002523 ORTHO05M002762 6.6e-16 87.8 92 53.3
EJB05_37516 Eragrostis curvula HOM05M002523 ORTHO05M002762 8.7e-16 87.4 85 60.0
EJB05_39191 Eragrostis curvula HOM05M002523 ORTHO05M002762 8.7e-16 87.4 85 60.0
GWHGAZTO030022 Oryza alta HOM05M002523 ORTHO05M002762 8.7e-16 87.4 86 61.6
Zjn_sc00194.1.g00100.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM05M002523 ORTHO05M002762 8.7e-16 87.4 111 50.5
V3.Lp_chr2_0G15556 Lolium perenne HOM05M002523 ORTHO05M002762 1.1e-15 87.0 84 54.8
Misin12G111700 Miscanthus sinensis HOM05M002523 ORTHO05M002762 1.1e-15 87.0 123 45.5
EJB05_39206 Eragrostis curvula HOM05M002523 ORTHO05M002762 1.9e-15 86.3 85 58.8
Bradi5g12920 Brachypodium distachyon HOM05M002523 ORTHO05M002762 2.5e-15 85.9 98 49.0
Misin11G107800 Miscanthus sinensis HOM05M002523 ORTHO05M002762 2.5e-15 85.9 84 56.0
Sspon.05G0025260-3D Saccharum spontaneum HOM05M002523 ORTHO05M002762 2.5e-15 85.9 130 43.8
OB04G22860 Oryza brachyantha HOM05M002523 ORTHO05M002762 4.3e-15 85.1 119 50.4
OsR498G0408732400.01 Oryza sativa ssp. indica HOM05M002523 ORTHO05M002762 4.3e-15 85.1 82 62.2
OsKitaake04g161400 Oryza sativa Kitaake HOM05M002523 ORTHO05M002762 5.6e-15 84.7 86 59.3
Os04g0468600 Oryza sativa ssp. japonica HOM05M002523 ORTHO05M002762 5.6e-15 84.7 86 59.3
Sspon.05G0009500-1A Saccharum spontaneum HOM05M002523 ORTHO05M002762 5.6e-15 84.7 165 36.4
Sspon.05G0009500-2C Saccharum spontaneum HOM05M002523 ORTHO05M002762 5.6e-15 84.7 82 61.0
Sobic.006G113000 Sorghum bicolor HOM05M002523 ORTHO05M002762 5.6e-15 84.7 85 56.5
GWHGAZTO019236 Oryza alta HOM05M002523 ORTHO05M002762 9.6e-15 84.0 113 51.3
Sevir.7G138800 Setaria viridis HOM05M002523 ORTHO05M002762 1.3e-14 83.6 233 33.9
Zjn_sc00006.1.g01050.1.am.mk Zoysia japonica ssp. nagirizaki HOM05M002523 ORTHO05M002762 1.3e-14 83.6 82 58.5
AET3Gv20266900 Aegilops tauschii HOM05M002523 ORTHO05M002762 2.8e-14 82.4 151 41.7
EJB05_37518 Eragrostis curvula HOM05M002523 ORTHO05M002762 2.8e-14 82.4 193 34.2
TraesCS3D03G0258100 Triticum aestivum HOM05M002523 ORTHO05M002762 2.8e-14 82.4 151 41.7
Dexi7A01G0009330 Digitaria exilis HOM05M002523 ORTHO05M002762 4.8e-14 81.6 80 53.8
Dexi7B01G0010220 Digitaria exilis HOM05M002523 ORTHO05M002762 4.8e-14 81.6 80 53.8
Misin12G111600 Miscanthus sinensis HOM05M002523 ORTHO05M002762 4.8e-14 81.6 237 33.8
Zm00001eb080230 Zea mays B73 HOM05M002523 ORTHO05M002762 8.1e-14 80.9 96 52.1
Bradi3g47180 Brachypodium distachyon HOM05M002523 ORTHO05M002762 1.1e-13 80.5 138 43.5
EJB05_21091 Eragrostis curvula HOM05M002523 ORTHO05M002762 1.4e-13 80.1 78 59.0
Ot_Chr1_gn32010 Oropetium thomaeum HOM05M002523 ORTHO05M002762 1.4e-13 80.1 115 44.3
OsKitaake02g223200 Oryza sativa Kitaake HOM05M002523 ORTHO05M002762 1.4e-13 80.1 127 47.2
OsR498G0204189200.01 Oryza sativa ssp. indica HOM05M002523 ORTHO05M002762 1.4e-13 80.1 127 47.2
Os02g0582800 Oryza sativa ssp. japonica HOM05M002523 ORTHO05M002762 1.4e-13 80.1 127 47.2
TRITD3Av1G040770 Triticum turgidum HOM05M002523 ORTHO05M002762 1.4e-13 80.1 117 48.7
GWHGASIY013963 Secale cereale HOM05M002523 ORTHO05M002762 2.4e-13 79.3 85 55.3
GWHGASIY016872 Secale cereale HOM05M002523 ORTHO05M002762 2.4e-13 79.3 85 55.3
Ot_Chr6_gn36840 Oropetium thomaeum HOM05M002523 ORTHO05M002762 3.1e-13 79.0 112 47.3
GWHGAZTO070843 Oryza alta HOM05M002523 ORTHO05M002762 3.1e-13 79.0 90 55.6
TraesCS3B03G0333300 Triticum aestivum HOM05M002523 ORTHO05M002762 3.1e-13 79.0 136 41.9
TRITD3Bv1G049200 Triticum turgidum HOM05M002523 ORTHO05M002762 3.1e-13 79.0 130 43.1
Seita.7G130200 Setaria italica HOM05M002523 ORTHO05M002762 4.0e-13 78.6 231 32.9
GWHGAORA022657 Cenchrus purpureus HOM05M002523 ORTHO05M002762 6.9e-13 77.8 183 35.5
Pahal.1G284600 Panicum hallii HOM05M002523 ORTHO05M002762 6.9e-13 77.8 125 44.8
Zjn_sc00017.1.g02000.1.am.mk Zoysia japonica ssp. nagirizaki HOM05M000582 ORTHO05M002202 6.9e-13 77.8 86 52.3
Misin07G385700 Miscanthus sinensis HOM05M002523 ORTHO05M002762 9.0e-13 77.4 111 47.7
PH02Gene16343 Phyllostachys edulis HOM05M002523 ORTHO05M002762 9.0e-13 77.4 196 32.7
Zjn_sc00194.1.g00110.1.am.mk Zoysia japonica ssp. nagirizaki HOM05M009126 ORTHO05M011437 9.0e-13 77.4 202 33.7
GWHGAORA024172 Cenchrus purpureus HOM05M002523 ORTHO05M002762 1.2e-12 77.0 82 57.3
Sobic.004G195300 Sorghum bicolor HOM05M002523 ORTHO05M002762 1.2e-12 77.0 102 51.0
GWHGAORA059617 Cenchrus purpureus HOM05M002523 ORTHO05M002762 1.5e-12 76.6 102 51.0
Dexi1B01G0017300 Digitaria exilis HOM05M002523 ORTHO05M002762 2.0e-12 76.3 110 43.6
Zm00007a00018802 Zea mays B104 HOM05M002523 ORTHO05M002762 2.0e-12 76.3 145 40.0
V3.Lp_chr4_0G19960 Lolium perenne HOM05M002523 ORTHO05M002762 3.4e-12 75.5 134 41.0
Sspon.04G0009530-3D Saccharum spontaneum HOM05M002523 ORTHO05M002762 4.4e-12 75.1 142 40.8
TraesCS3A03G0265100 Triticum aestivum HOM05M002523 ORTHO05M002762 4.4e-12 75.1 113 47.8
TRIDC3AG015090 Triticum dicoccoides HOM05M002523 ORTHO05M002762 4.4e-12 75.1 113 47.8
Zm00001eb245460 Zea mays B73 HOM05M002523 ORTHO05M002762 5.8e-12 74.7 85 54.1
Seita.1G211800 Setaria italica HOM05M002523 ORTHO05M002762 7.6e-12 74.3 111 45.9
Sevir.1G215400 Setaria viridis HOM05M002523 ORTHO05M002762 7.6e-12 74.3 111 45.9
OB04G22850 Oryza brachyantha HOM05M002523 ORTHO05M002762 9.9e-12 73.9 197 33.5
TRIDC3BG019650 Triticum dicoccoides HOM05M002523 ORTHO05M002762 9.9e-12 73.9 81 54.3
OsKitaake04g161300 Oryza sativa Kitaake HOM05M002523 ORTHO05M002762 1.3e-11 73.6 207 32.9
Sspon.04G0009530-1A Saccharum spontaneum HOM05M002523 ORTHO05M002762 1.3e-11 73.6 152 39.5
Misin07G385500 Miscanthus sinensis HOM05M002523 ORTHO05M002762 1.7e-11 73.2 83 54.2
EJB05_37560 Eragrostis curvula HOM05M002523 ORTHO05M002762 2.9e-11 72.4 193 32.1
Sspon.04G0009530-2B Saccharum spontaneum HOM05M002523 ORTHO05M002762 8.4e-11 70.9 79 54.4
GWHGAZTO030020 Oryza alta HOM05M002523 ORTHO05M002762 1.1e-10 70.5 223 32.3
Zm00007a00003925 Zea mays B104 HOM05M002523 ORTHO05M002762 1.4e-10 70.1 81 53.1
TraesCS7A03G0584300 Triticum aestivum HOM05M002523 ORTHO05M002762 3.2e-10 68.9 126 39.7
Ot_Chr6_g22734 Oropetium thomaeum HOM05M002523 ORTHO05M002762 2.7e-09 65.9 227 38.3
OsKitaake09g056600 Oryza sativa Kitaake HOM05M000010 ORTHO05M010583 3.0e-08 62.4 102 41.2
Os09g0328066 Oryza sativa ssp. japonica HOM05M002523 ORTHO05M002762 3.0e-08 62.4 102 41.2
Zm00001eb245420 Zea mays B73 HOM05M002523 ORTHO05M002762 6.6e-08 61.2 89 46.1
Glyma.09G016400 Glycine max HOM05M000648 ORTHO05M000476 2.5e-07 59.3 79 43.0
OB09G13780 Oryza brachyantha HOM05M002523 ORTHO05M002762 2.5e-07 59.3 76 47.4
Zm00001eb245480 Zea mays B73 HOM05M000648 ORTHO05M000476 3.3e-07 58.9 79 43.0
Aco015302 Ananas comosus HOM05M000648 ORTHO05M000476 4.3e-07 58.5 82 39.0
Potri.014G171300 Populus trichocarpa HOM05M000648 ORTHO05M000476 1.3e-06 57.0 79 39.2
Zm00007a00027990 Zea mays B104 HOM05M000648 ORTHO05M000476 1.6e-06 56.6 78 42.3
Dexi1A01G0018680 Digitaria exilis HOM05M000648 ORTHO05M000476 2.1e-06 56.2 96 36.5
Potri.009G048100 Populus trichocarpa HOM05M000648 ORTHO05M000476 2.1e-06 56.2 89 34.8
Potri.009G048400 Populus trichocarpa HOM05M000648 ORTHO05M000476 2.1e-06 56.2 89 34.8
evm.TU.AsparagusV1_05.1058.V1.1 Asparagus officinalis HOM05M004075 ORTHO05M000476 2.8e-06 55.8 89 34.8
MBI12_g26217_MAGBIO Magnolia biondii HOM05M000648 ORTHO05M000476 2.8e-06 55.8 86 32.6
Bradi5g12930 Brachypodium distachyon HOM05M000648 ORTHO05M000476 3.6e-06 55.5 89 38.2
V3.Lp_chr2_0G15554 Lolium perenne HOM05M002523 ORTHO05M002762 3.6e-06 55.5 90 42.2
evm.TU.AsparagusV1_05.1041.V1.1 Asparagus officinalis HOM05M004075 ORTHO05M000476 4.8e-06 55.1 88 35.2
MBI15_g37255_MAGBIO Magnolia biondii HOM05M000648 ORTHO05M000476 4.8e-06 55.1 80 35.0
Bradi3g47200 Brachypodium distachyon HOM05M000648 ORTHO05M000476 8.1e-06 54.3 95 34.7
Dexi1B01G0017320 Digitaria exilis HOM05M000648 ORTHO05M000476 8.1e-06 54.3 79 39.2


User provided reference genes

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