Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zjn_sc00028.1.g03040.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM05M002623 ORTHO05M003875 0.0e+00 2556.9 1311 100.0
EJB05_55165 Eragrostis curvula HOM05M002623 ORTHO05M003875 0.0e+00 2134.0 1750 67.5
EJB05_29648 Eragrostis curvula HOM05M002623 ORTHO05M003875 0.0e+00 2124.7 1773 66.7
Seita.8G022300 Setaria italica HOM05M002623 ORTHO05M003875 0.0e+00 2052.7 1750 64.9
Sevir.8G024800 Setaria viridis HOM05M002623 ORTHO05M003875 0.0e+00 2050.8 1750 64.9
Pahal.8G022100 Panicum hallii HOM05M002623 ORTHO05M003875 0.0e+00 2045.4 1750 64.4
Sevir.7G324300 Setaria viridis HOM05M002623 ORTHO05M003875 0.0e+00 2045.4 1750 64.7
Seita.7G314600 Setaria italica HOM05M002623 ORTHO05M003875 0.0e+00 2043.1 1750 64.6
Sobic.005G026200 Sorghum bicolor HOM05M002623 ORTHO05M003875 0.0e+00 2025.4 1744 64.5
GWHGAORA005561 Cenchrus purpureus HOM05M002623 ORTHO05M003875 0.0e+00 2024.6 1750 64.1
Zm00001eb196280 Zea mays B73 HOM05M002623 ORTHO05M003875 0.0e+00 2016.1 1742 64.0
Pahal.3G020000 Panicum hallii HOM05M002623 ORTHO05M003875 0.0e+00 2011.9 1750 63.5
PH02Gene09888 Phyllostachys edulis HOM05M002623 ORTHO05M003875 0.0e+00 1995.3 1750 62.9
Bradi4g43517 Brachypodium distachyon HOM05M002623 ORTHO05M003875 0.0e+00 1957.2 1751 62.0
GWHGAZTO013588 Oryza alta HOM05M002623 ORTHO05M003875 0.0e+00 1948.3 1754 61.5
OB11G12000 Oryza brachyantha HOM05M002623 ORTHO05M003875 0.0e+00 1947.6 1754 61.4
OsR498G1220895400.01 Oryza sativa ssp. indica HOM05M002623 ORTHO05M003875 0.0e+00 1941.4 1754 61.2
OsKitaake12g026400 Oryza sativa Kitaake HOM05M002623 ORTHO05M003875 0.0e+00 1941.0 1754 61.1
OsKitaake11g022200 Oryza sativa Kitaake HOM05M002623 ORTHO05M003875 0.0e+00 1937.5 1754 60.9
OsR498G1119384600.01 Oryza sativa ssp. indica HOM05M002623 ORTHO05M003875 0.0e+00 1937.2 1754 60.9
GWHGAZTO062552 Oryza alta HOM05M002623 ORTHO05M003875 0.0e+00 1936.8 1754 61.1
Horvu_MOREX_5H01G240500 Hordeum vulgare HOM05M002623 ORTHO05M003875 0.0e+00 1932.9 1750 61.7
OB12G12320 Oryza brachyantha HOM05M002623 ORTHO05M003875 0.0e+00 1932.5 1746 61.1
GWHGAZTO065527 Oryza alta HOM05M002623 ORTHO05M003875 0.0e+00 1931.4 1754 60.8
GWHGASIY025385 Secale cereale HOM05M002623 ORTHO05M003875 0.0e+00 1919.4 1750 61.3
TraesCS5B03G0378100 Triticum aestivum HOM05M002623 ORTHO05M003875 0.0e+00 1913.7 1750 61.1
TRIDC5BG024330 Triticum dicoccoides HOM05M002623 ORTHO05M003875 0.0e+00 1913.7 1750 61.1
TRITD5Bv1G086310 Triticum turgidum HOM05M002623 ORTHO05M003875 0.0e+00 1913.7 1750 61.1
TRIDC5AG023340 Triticum dicoccoides HOM05M002623 ORTHO05M003875 0.0e+00 1912.1 1750 61.0
V3.Lp_chr5_0G8170 Lolium perenne HOM05M002623 ORTHO05M003875 0.0e+00 1908.6 1751 60.9
TraesCS5A03G0386500 Triticum aestivum HOM05M002623 ORTHO05M003875 0.0e+00 1908.6 1750 61.0
TRITD5Av1G105490 Triticum turgidum HOM05M002623 ORTHO05M003875 0.0e+00 1908.6 1750 61.0
GWHGAORA042986 Cenchrus purpureus HOM05M002623 ORTHO05M003875 0.0e+00 1904.4 1736 62.0
AET5Gv20364000 Aegilops tauschii HOM05M002623 ORTHO05M003875 0.0e+00 1904.0 1750 60.8
Sspon.05G0020280-1A Saccharum spontaneum HOM05M002623 ORTHO05M003875 0.0e+00 1889.0 1744 61.4
GWHGAORA010878 Cenchrus purpureus HOM05M002623 ORTHO05M003875 0.0e+00 1873.6 1728 61.5
Dexi3A01G0002120 Digitaria exilis HOM05M002623 ORTHO05M003875 0.0e+00 1852.0 1779 59.5
Dexi8A01G0002170 Digitaria exilis HOM05M002623 ORTHO05M003875 0.0e+00 1842.8 1785 59.1
Dexi3B01G0002130 Digitaria exilis HOM05M002623 ORTHO05M003875 0.0e+00 1798.5 1738 59.1
TraesCS5D03G0379800 Triticum aestivum HOM05M002623 ORTHO05M003875 0.0e+00 1793.1 1750 58.3
Sspon.05G0020280-2B Saccharum spontaneum HOM05M002623 ORTHO05M003875 0.0e+00 1787.7 1744 58.9
Dexi8B01G0002000 Digitaria exilis HOM05M002623 ORTHO05M003875 0.0e+00 1775.4 1251 75.2
GWHGAORA040534 Cenchrus purpureus HOM05M002623 ORTHO05M003875 0.0e+00 1762.7 1750 58.3
Os11g0137300 Oryza sativa ssp. japonica HOM05M002623 ORTHO05M003875 0.0e+00 1719.5 1048 82.6
Sspon.05G0020280-3D Saccharum spontaneum HOM05M002623 ORTHO05M003875 0.0e+00 1664.0 1257 71.6
GWHGAORA042970 Cenchrus purpureus HOM05M002623 ORTHO05M003875 0.0e+00 1585.1 1746 54.3
Aco007226 Ananas comosus HOM05M002623 ORTHO05M003875 0.0e+00 1567.7 1770 50.7
p5.00_sc00094_p0015 Elaeis guineensis HOM05M002623 ORTHO05M003875 0.0e+00 1545.4 1748 49.9
evm.TU.AsparagusV1_08.3041.V1.1 Asparagus officinalis HOM05M002623 ORTHO05M003875 0.0e+00 1484.5 1745 48.1
EJB05_02148 Eragrostis curvula HOM05M002623 ORTHO05M003875 0.0e+00 1471.1 1739 52.9
EJB05_02171 Eragrostis curvula HOM05M002623 ORTHO05M003875 0.0e+00 1461.4 1689 53.3
Ma07_g22880 Musa acuminata HOM05M002623 ORTHO05M003875 0.0e+00 1426.8 1166 63.0
MBI19_g07497_MAGBIO Magnolia biondii HOM05M002623 ORTHO05M003875 0.0e+00 1413.7 1099 65.5
ATR0307G114 Amborella trichopoda HOM05M002623 ORTHO05M003875 0.0e+00 1343.6 1168 59.2
Spipo22G0019000 Spirodela polyrhiza HOM05M002623 ORTHO05M003875 0.0e+00 1335.1 1097 61.5
Potri.001G274500 Populus trichocarpa HOM05M002623 ORTHO05M003875 0.0e+00 1329.7 1159 58.8
Glyma.14G036800 Glycine max HOM05M002623 ORTHO05M003875 0.0e+00 1324.3 1164 58.8
AT2G26780 Arabidopsis thaliana HOM05M002623 ORTHO05M003875 0.0e+00 1311.2 1137 59.5
Zosma02g18460 Zostera marina HOM05M002623 ORTHO05M003875 0.0e+00 1310.8 1752 43.6
GWHGAORA040495 Cenchrus purpureus HOM05M002623 ORTHO05M003875 0.0e+00 1274.6 1587 52.0
AagrBONN_evm.TU.Sc2ySwM_117.694 Anthoceros agrestis HOM05M002623 ORTHO05M003875 0.0e+00 1080.1 1150 49.4
Solyc11g062310.2 Solanum lycopersicum HOM05M002623 ORTHO05M003875 0.0e+00 1077.4 945 58.3
Mapoly0009s0155 Marchantia polymorpha HOM05M002623 ORTHO05M003875 1.6e-303 1045.8 1160 48.4
Pp3c1_28010 Physcomitrium patens HOM05M002623 ORTHO05M003875 1.8e-302 1042.3 1282 44.9
SMO228G0054 Selaginella moellendorffii HOM05M002623 ORTHO05M003875 1.1e-288 996.5 1135 47.0
Asa7G02338 Allium sativum HOM05M002623 ORTHO05M003875 1.9e-288 995.7 902 58.1
CALSI_Maker00004851 Calamus simplicifolius HOM05M002623 ORTHO05M003875 7.7e-253 877.5 1220 45.2
Os12g0148400 Oryza sativa ssp. japonica HOM05M002623 ORTHO05M003875 3.6e-242 842.0 607 71.3
HPP92_022829 Vanilla planifolia HOM05M002623 ORTHO05M003875 1.5e-227 793.5 788 53.6
CALSI_Maker00004850 Calamus simplicifolius HOM05M002623 ORTHO05M003875 1.0e-225 787.3 905 51.7
CALSI_Maker00004845 Calamus simplicifolius HOM05M002623 ORTHO05M003875 5.9e-221 771.5 1051 46.7
DDU477G0284 Dioscorea dumetorum HOM05M002623 ORTHO05M003875 3.8e-220 768.8 733 56.1
OsR498G1220940400.01 Oryza sativa ssp. indica HOM05M002623 ORTHO05M003875 1.3e-207 727.2 512 72.9
CBR_g37490 Chara braunii HOM05M002623 ORTHO05M003875 2.3e-196 689.9 1223 35.4
SEGI_14316 Sequoiadendron giganteum HOM05M002623 ORTHO05M003875 4.9e-191 672.2 703 50.2
GWHGAORA010658 Cenchrus purpureus HOM05M002623 ORTHO05M003875 6.6e-188 661.8 679 58.6
Os12g0134200 Oryza sativa ssp. japonica HOM05M002623 ORTHO05M003875 4.9e-175 619.0 913 43.6
Zm00007a00051305 Zea mays B104 HOM05M002623 ORTHO05M003875 8.4e-175 618.2 352 90.3
MCO04G062 Micromonas commoda HOM05M002623 ORTHO05M003875 1.4e-169 600.9 1317 32.0
CDE02G2423 Ceratophyllum demersum HOM05M002623 ORTHO05M003875 1.2e-165 587.8 747 45.9
PRCOL_00001646 Prasinoderma coloniale HOM05M002623 ORTHO05M003875 4.0e-161 572.8 1247 32.6
Sspon.05G0030180-2C Saccharum spontaneum HOM05M002623 ORTHO05M003875 2.6e-144 516.9 898 40.3
SEGI_37322 Sequoiadendron giganteum HOM05M002623 ORTHO05M003875 2.7e-141 506.9 449 56.6
GWHGAZTO010341 Oryza alta HOM05M002623 ORTHO05M003875 8.2e-138 495.4 465 61.3
OsR498G1221259900.01 Oryza sativa ssp. indica HOM05M002623 ORTHO05M003875 3.9e-132 476.5 313 75.4
DDU477G0237 Dioscorea dumetorum HOM05M002623 ORTHO05M003875 1.4e-126 458.0 362 62.2
Zm00007a00048080 Zea mays B104 HOM05M002623 ORTHO05M003875 2.4e-121 440.7 281 80.1
Cre04.g217935 Chlamydomonas reinhardtii HOM05M002623 ORTHO05M003875 1.0e-116 425.2 1722 25.2
GWHGAORA010657 Cenchrus purpureus HOM05M002623 ORTHO05M003875 1.2e-109 401.7 266 77.4
Zm00007a00030906 Zea mays B104 HOM05M002623 ORTHO05M003875 2.5e-102 377.5 224 80.8
CDE02G1339 Ceratophyllum demersum HOM05M002623 ORTHO05M003875 4.5e-96 356.7 766 32.4
MisinT524700 Miscanthus sinensis HOM05M002623 ORTHO05M003875 1.1e-86 325.5 171 94.2
GWHGAORA010659 Cenchrus purpureus HOM05M002623 ORTHO05M003875 1.5e-70 271.9 368 44.3
Zm00007a00027823 Zea mays B104 HOM05M002623 ORTHO05M003875 5.6e-70 270.0 176 76.7
Solyc11g062320.2 Solanum lycopersicum HOM05M002623 ORTHO05M003875 2.1e-69 268.1 225 56.0
Dexi8B01G0001990 Digitaria exilis HOM05M002623 ORTHO05M003875 7.6e-67 259.6 176 73.9
SEGI_21027 Sequoiadendron giganteum HOM05M002623 ORTHO05M003875 1.6e-56 225.3 206 54.9
GWHGAZTO010340 Oryza alta HOM05M002623 ORTHO05M003875 4.3e-54 217.2 111 93.7
Sspon.05G0030180-1B Saccharum spontaneum HOM05M002623 ORTHO05M003875 1.9e-38 165.2 184 53.8
Sspon.05G0030190-1B Saccharum spontaneum HOM05M002623 ORTHO05M003875 5.6e-38 163.7 225 45.8
CALSI_Maker00021185 Calamus simplicifolius HOM05M002623 ORTHO05M003875 1.2e-35 156.0 185 48.1
DDU477G0048 Dioscorea dumetorum HOM05M002623 ORTHO05M003875 6.9e-28 130.2 167 47.9
Solyc11g062300.3 Solanum lycopersicum HOM05M002623 ORTHO05M021267 2.0e-27 128.6 170 44.7
CALSI_Maker00004844 Calamus simplicifolius HOM05M002623 ORTHO05M014710 4.5e-27 127.5 85 69.4
Asa7G02336 Allium sativum HOM05M002623 ORTHO05M003875 5.9e-27 127.1 162 43.8
GWHGASIY025381 Secale cereale HOM05M002623 ORTHO05M014710 9.3e-25 119.8 63 87.3
CDE02G1487 Ceratophyllum demersum HOM05M002623 ORTHO05M021267 8.7e-23 113.2 169 37.9
Asa7G02337 Allium sativum HOM05M002623 ORTHO05M003875 2.4e-20 105.1 58 84.5
PH02Gene41557 Phyllostachys edulis HOM05M002543 ORTHO05M005405 1.2e-19 102.8 127 45.7
Asa7G03698 Allium sativum HOM05M002623 ORTHO05M016544 7.7e-19 100.1 86 59.3
SEGI_03367 Sequoiadendron giganteum HOM05M002623 ORTHO05M003875 1.0e-18 99.8 170 35.9
SEGI_00784 Sequoiadendron giganteum HOM05M002623 ORTHO05M014710 3.8e-18 97.8 83 50.6
HPP92_022831 Vanilla planifolia HOM05M002623 ORTHO05M003875 7.4e-14 83.6 285 23.9
SEGI_16541 Sequoiadendron giganteum HOM05M002623 ORTHO05M014710 9.1e-12 76.6 56 58.9
GWHGAZTO010342 Oryza alta HOM05M002623 ORTHO05M014710 3.4e-11 74.7 62 62.9
PH02Gene09885 Phyllostachys edulis HOM05M002623 ORTHO05M005405 1.3e-10 72.8 37 91.9
SEGI_07125 Sequoiadendron giganteum HOM05M002623 ORTHO05M240953 5.0e-10 70.9 113 39.8
MisinT524600 Miscanthus sinensis HOM05M002623 ORTHO05M003875 1.9e-09 68.9 34 91.2
SEGI_01442 Sequoiadendron giganteum HOM05M002623 ORTHO05M021267 7.2e-09 67.0 142 31.0
SEGI_28959 Sequoiadendron giganteum HOM05M002623 ORTHO05M021267 1.2e-08 66.2 129 36.4
GWHGAZTO010339 Oryza alta HOM05M002623 ORTHO05M003875 3.6e-08 64.7 34 85.3
CALSI_Maker00004853 Calamus simplicifolius HOM05M007170 ORTHO05M008853 6.7e-07 60.5 92 37.0
EJB05_33520 Eragrostis curvula HOM05M002623 ORTHO05M114714 2.0e-06 58.9 92 42.4


User provided reference genes

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