Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zjn_sc00023.1.g03030.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M003294 ORTHO05M004110 1.2e-233 812.0 407 100.0
EJB05_39317 Eragrostis curvula HOM05M003294 ORTHO05M004110 1.8e-192 675.2 595 63.0
Ot_Chr6_g01679 Oropetium thomaeum HOM05M003294 ORTHO05M004110 2.3e-192 674.9 596 63.3
EJB05_40837 Eragrostis curvula HOM05M003294 ORTHO05M004110 4.9e-190 667.2 595 62.7
Seita.2G303800 Setaria italica HOM05M003294 ORTHO05M004110 3.9e-187 657.5 596 60.9
Sevir.2G314600 Setaria viridis HOM05M003294 ORTHO05M004110 3.9e-187 657.5 596 60.9
Pahal.2G362400 Panicum hallii HOM05M003294 ORTHO05M004110 2.5e-186 654.8 596 60.4
GWHGAORA048557 Cenchrus purpureus HOM05M003294 ORTHO05M004110 5.8e-183 643.7 596 59.6
Sobic.006G213400 Sorghum bicolor HOM05M003294 ORTHO05M004110 6.4e-182 640.2 594 59.6
Zm00001eb070920 Zea mays B73 HOM05M003294 ORTHO05M004110 9.2e-181 636.3 592 59.8
Dexi2A01G0025670 Digitaria exilis HOM05M003294 ORTHO05M004110 1.3e-179 632.5 622 57.9
Zm00007a00035380 Zea mays B104 HOM05M003294 ORTHO05M004110 1.7e-179 632.1 601 58.9
Misin12G206800 Miscanthus sinensis HOM05M003294 ORTHO05M004110 1.5e-178 629.0 594 58.4
Sspon.05G0002620-3D Saccharum spontaneum HOM05M003294 ORTHO05M004110 3.3e-178 627.9 594 58.4
Dexi2B01G0024250 Digitaria exilis HOM05M003294 ORTHO05M004110 2.1e-177 625.2 622 57.1
PH02Gene01770 Phyllostachys edulis HOM05M003294 ORTHO05M004110 1.4e-173 612.5 597 57.6
GWHGAORA007280 Cenchrus purpureus HOM05M003294 ORTHO05M004110 1.1e-170 602.8 590 57.3
PH02Gene09661 Phyllostachys edulis HOM05M003294 ORTHO05M004110 3.1e-168 594.7 602 55.8
GWHGAZTO047162 Oryza alta HOM05M003294 ORTHO05M004110 7.1e-165 583.6 604 55.1
Bradi3g17836 Brachypodium distachyon HOM05M003294 ORTHO05M004110 1.6e-164 582.4 602 55.0
GWHGAORA036147 Cenchrus purpureus HOM05M003294 ORTHO05M004110 7.8e-164 580.1 603 55.6
Misin13G050500 Miscanthus sinensis HOM05M003294 ORTHO05M004110 7.8e-164 580.1 599 55.4
Sspon.05G0002620-2B Saccharum spontaneum HOM05M003294 ORTHO05M004110 7.8e-164 580.1 599 55.3
Sspon.05G0002620-1P Saccharum spontaneum HOM05M003294 ORTHO05M004110 1.0e-163 579.7 601 55.1
Sspon.06G0030140-2D Saccharum spontaneum HOM05M003294 ORTHO05M004110 1.0e-163 579.7 601 55.1
Seita.6G027400 Setaria italica HOM05M003294 ORTHO05M004110 1.7e-163 578.9 603 55.9
GWHGAZTO093905 Oryza alta HOM05M003294 ORTHO05M004110 3.9e-163 577.8 606 55.1
OsR498G0815398700.01 Oryza sativa ssp. indica HOM05M003294 ORTHO05M004110 8.7e-163 576.6 602 55.3
Os08g0206600 Oryza sativa ssp. japonica HOM05M003294 ORTHO05M004110 1.1e-162 576.2 603 55.6
Sevir.6G025800 Setaria viridis HOM05M003294 ORTHO05M004110 1.1e-162 576.2 601 55.9
Sobic.007G075200 Sorghum bicolor HOM05M003294 ORTHO05M004110 3.3e-162 574.7 601 54.6
OsKitaake08g067600 Oryza sativa Kitaake HOM05M003294 ORTHO05M004110 7.3e-162 573.5 604 55.1
Ot_Chr9_g13993 Oropetium thomaeum HOM05M003294 ORTHO05M004110 1.3e-161 572.8 601 55.2
V3.Lp_chr7_0.1G7274 Lolium perenne HOM05M003294 ORTHO05M004110 8.1e-161 570.1 601 54.7
GWHGAORA012723 Cenchrus purpureus HOM05M003294 ORTHO05M004110 1.4e-160 569.3 603 54.7
Pahal.6G067400 Panicum hallii HOM05M003294 ORTHO05M004110 9.0e-160 566.6 606 54.6
Zm00001eb413740 Zea mays B73 HOM05M003294 ORTHO05M004110 2.6e-159 565.1 602 54.2
Sspon.05G0002620-1A Saccharum spontaneum HOM05M003294 ORTHO05M004110 2.2e-158 562.0 573 56.0
Zm00007a00020190 Zea mays B104 HOM05M003294 ORTHO05M004110 8.4e-158 560.1 604 53.6
Misin07G137400 Miscanthus sinensis HOM05M003294 ORTHO05M004110 5.4e-157 557.4 599 54.1
OB08G16110 Oryza brachyantha HOM05M003294 ORTHO05M004110 4.6e-156 554.3 548 55.1
EJB05_09716 Eragrostis curvula HOM05M003294 ORTHO05M004110 1.3e-155 552.7 539 56.6
Sspon.06G0030140-1C Saccharum spontaneum HOM05M003294 ORTHO05M004110 1.8e-155 552.4 571 55.2
Zjn_sc00142.1.g00680.1.sm.mk Zoysia japonica ssp. nagirizaki HOM05M003294 ORTHO05M004110 1.6e-153 545.8 539 56.4
GWHGAORA048508 Cenchrus purpureus HOM05M003294 ORTHO05M004110 9.0e-152 540.0 559 55.5
TraesCS1A03G0724800 Triticum aestivum HOM05M003294 ORTHO05M004110 1.3e-150 536.2 551 55.0
TRIDC1AG043110 Triticum dicoccoides HOM05M003294 ORTHO05M004110 1.3e-150 536.2 551 55.0
evm.TU.AsparagusV1_08.3628.V1.1 Asparagus officinalis HOM05M003294 ORTHO05M004110 4.9e-150 534.3 593 54.0
TRITD1Av1G178020 Triticum turgidum HOM05M003294 ORTHO05M004110 4.9e-150 534.3 595 51.8
GWHGASIY003772 Secale cereale HOM05M003294 ORTHO05M004110 6.4e-150 533.9 592 52.2
TraesCS3D03G0995600 Triticum aestivum HOM05M003294 ORTHO05M004110 6.4e-150 533.9 561 54.5
AET1Gv20689800 Aegilops tauschii HOM05M003294 ORTHO05M004110 1.1e-149 533.1 592 52.0
TraesCS1D03G0689300 Triticum aestivum HOM05M003294 ORTHO05M004110 1.4e-149 532.7 591 52.1
TRIDC3BG073280 Triticum dicoccoides HOM05M003294 ORTHO05M004110 1.9e-149 532.3 540 55.0
TRITD1Bv1G164070 Triticum turgidum HOM05M003294 ORTHO05M004110 1.9e-149 532.3 578 53.5
Horvu_MOREX_3H01G616600 Hordeum vulgare HOM05M003294 ORTHO05M004110 2.4e-149 531.9 544 54.8
TRIDC3AG064940 Triticum dicoccoides HOM05M003294 ORTHO05M004110 3.2e-149 531.6 540 54.8
AET3Gv21020300 Aegilops tauschii HOM05M003294 ORTHO05M004110 4.2e-149 531.2 528 55.5
TRIDC1BG048910 Triticum dicoccoides HOM05M003294 ORTHO05M004110 4.2e-149 531.2 579 53.4
TraesCS3B03G1235600 Triticum aestivum HOM05M003294 ORTHO05M004110 5.5e-149 530.8 591 52.3
TraesCS3A03G1066800 Triticum aestivum HOM05M003294 ORTHO05M004110 7.1e-149 530.4 559 53.3
GWHGASIY017522 Secale cereale HOM05M003294 ORTHO05M004110 3.5e-148 528.1 593 52.3
p5.00_sc00042_p0120 Elaeis guineensis HOM05M003294 ORTHO05M004110 3.9e-147 524.6 600 51.8
TraesCS1B03G0827000 Triticum aestivum HOM05M003294 ORTHO05M004110 1.1e-146 523.1 579 53.0
DDU479G0181 Dioscorea dumetorum HOM05M003294 ORTHO05M004110 1.9e-146 522.3 598 51.2
DDU732G0009 Dioscorea dumetorum HOM05M003294 ORTHO05M004110 1.9e-146 522.3 598 51.2
evm.TU.AsparagusV1_06.123.V1.1 Asparagus officinalis HOM05M003294 ORTHO05M004110 1.3e-145 519.6 593 52.3
Asa3G02728 Allium sativum HOM05M003294 ORTHO05M004110 2.4e-144 515.4 596 50.7
Ma09_g31320 Musa acuminata HOM05M003294 ORTHO05M004110 1.0e-142 510.0 603 49.9
AT2G35040 Arabidopsis thaliana HOM05M003294 ORTHO05M004110 1.9e-141 505.8 569 50.8
Dexi6A01G0007490 Digitaria exilis HOM05M003294 ORTHO05M004110 3.2e-141 505.0 503 55.3
Aco000066 Ananas comosus HOM05M003294 ORTHO05M004110 7.1e-141 503.8 590 49.8
Glyma.04G133100 Glycine max HOM05M003294 ORTHO05M004110 9.3e-141 503.4 528 52.5
Glyma.11G158400 Glycine max HOM05M003294 ORTHO05M004110 4.6e-140 501.1 575 50.1
Potri.010G114400 Populus trichocarpa HOM05M003294 ORTHO05M004110 1.0e-139 500.0 599 48.6
Seita.7G235300 Setaria italica HOM05M003294 ORTHO05M004110 1.8e-139 499.2 528 53.0
Solyc08g075160.3 Solanum lycopersicum HOM05M003294 ORTHO05M004110 3.3e-138 495.0 549 51.4
Zosma03g15990 Zostera marina HOM05M003294 ORTHO05M004110 4.5e-135 484.6 545 49.7
ATR0150G008 Amborella trichopoda HOM05M003294 ORTHO05M004110 1.9e-133 479.2 559 49.9
CDE06G0368 Ceratophyllum demersum HOM05M003294 ORTHO05M004110 2.7e-132 475.3 528 50.4
CALSI_Maker00036528 Calamus simplicifolius HOM05M003294 ORTHO05M004110 6.3e-129 464.2 502 52.0
Bradi4g24880 Brachypodium distachyon HOM05M003294 ORTHO05M004110 2.0e-127 459.1 450 54.7
DexiUA01G0012920 Digitaria exilis HOM05M003294 ORTHO05M004110 8.5e-126 453.8 469 53.5
SEGI_14905 Sequoiadendron giganteum HOM05M003294 ORTHO05M004110 1.4e-123 446.4 554 46.9
TRITD3Av1G256930 Triticum turgidum HOM05M003294 ORTHO05M004110 3.1e-120 435.3 517 49.5
TRITD3Bv1G249610 Triticum turgidum HOM05M003294 ORTHO05M004110 6.9e-120 434.1 312 72.4
Pp3c12_24590 Physcomitrium patens HOM05M003294 ORTHO05M004110 2.0e-119 432.6 594 43.1
Asa3G02730 Allium sativum HOM05M003294 ORTHO05M004110 3.2e-117 425.2 248 81.9
Ma11_g10810 Musa acuminata HOM05M003294 ORTHO05M004110 3.2e-117 425.2 470 50.6
Pp3c4_1350 Physcomitrium patens HOM05M003294 ORTHO05M004110 3.2e-117 425.2 575 44.2
SMO228G0099 Selaginella moellendorffii HOM05M003294 ORTHO05M004110 1.0e-115 420.2 535 44.7
MBI14_g44727_MAGBIO Magnolia biondii HOM05M003294 ORTHO05M004110 3.9e-115 418.3 251 81.7
Spipo9G0025000 Spirodela polyrhiza HOM05M003294 ORTHO05M004110 1.8e-112 409.5 471 48.4
Mapoly0032s0021 Marchantia polymorpha HOM05M003294 ORTHO05M004110 7.0e-112 407.5 613 41.6
CBR_g50928 Chara braunii HOM05M003294 ORTHO05M004110 1.3e-110 403.3 603 42.5
AagrBONN_evm.TU.Sc2ySwM_368.3406 Anthoceros agrestis HOM05M003294 ORTHO05M004110 7.0e-104 380.9 594 39.2
CALSI_Maker00036534 Calamus simplicifolius HOM05M003294 ORTHO05M004110 7.2e-101 370.9 228 78.9
HPP92_009463 Vanilla planifolia HOM05M003294 ORTHO05M004110 4.8e-97 358.2 319 61.4
MCO04G009 Micromonas commoda HOM05M003294 ORTHO05M004110 1.9e-93 346.3 543 38.5
PRCOL_00001991 Prasinoderma coloniale HOM05M003294 ORTHO05M004110 7.0e-88 327.8 528 37.3
CDE02G3604 Ceratophyllum demersum HOM05M003294 ORTHO05M004110 1.5e-69 266.9 526 35.4
Pp3s32_111 Physcomitrium patens HOM05M003294 ORTHO05M028938 3.0e-62 242.7 516 34.1
Cre12.g537581 Chlamydomonas reinhardtii HOM05M003294 ORTHO05M004110 1.2e-60 237.3 564 31.0
DexiUA01G0011890 Digitaria exilis HOM05M003294 ORTHO05M028938 3.9e-46 189.1 443 29.6
CALSI_Maker00036542 Calamus simplicifolius HOM05M003294 ORTHO05M004110 4.5e-42 175.6 94 87.2
CALSI_Maker00001751 Calamus simplicifolius HOM05M003294 ORTHO05M004110 5.8e-42 175.3 93 88.2
TRITD3Av1G217470 Triticum turgidum HOM05M003294 ORTHO05M004110 9.9e-42 174.5 94 87.2
Sevir.7G246601 Setaria viridis HOM05M003294 ORTHO05M004110 2.0e-34 150.2 79 84.8
HPP92_009499 Vanilla planifolia HOM05M003294 ORTHO05M004110 1.9e-29 133.7 80 73.8
MBI14_g40671_MAGBIO Magnolia biondii HOM05M003294 ORTHO05M125977 1.6e-28 130.6 79 78.5
HPP92_009464 Vanilla planifolia HOM05M003294 ORTHO05M004110 1.2e-23 114.4 84 63.1
Ma11_g10790 Musa acuminata HOM05M003294 ORTHO05M024027 2.8e-20 103.2 138 54.3
Spipo0G0139400 Spirodela polyrhiza HOM05M003294 ORTHO05M024027 2.9e-17 93.2 67 73.1
Potri.008G128301 Populus trichocarpa HOM05M003294 ORTHO05M004110 3.7e-12 76.3 46 69.6
TraesCS6D03G0097900 Triticum aestivum HOM05M000418 ORTHO05M000729 1.5e-10 70.9 78 57.7
AET6Gv20101500 Aegilops tauschii HOM05M000418 ORTHO05M000729 5.9e-10 68.9 78 56.4
Sevir.7G247500 Setaria viridis HOM05M003294 ORTHO05M004110 2.1e-07 60.5 33 78.8


User provided reference genes

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