Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zjn_sc00022.1.g01490.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM05M005443 ORTHO05M007143 3.9e-111 404.1 205 100.0
Dexi1B01G0026080 Digitaria exilis HOM05M005443 ORTHO05M007143 1.6e-80 302.4 220 75.0
Pahal.1G381500 Panicum hallii HOM05M005443 ORTHO05M007143 2.0e-75 285.4 292 57.9
Seita.1G317900 Setaria italica HOM05M005443 ORTHO05M007143 3.8e-74 281.2 292 57.5
Sevir.1G324200 Setaria viridis HOM05M005443 ORTHO05M007143 3.8e-74 281.2 292 57.5
Sspon.04G0003550-2C Saccharum spontaneum HOM05M005443 ORTHO05M007143 5.5e-73 277.3 289 57.1
Sobic.004G238900 Sorghum bicolor HOM05M005443 ORTHO05M007143 1.2e-72 276.2 289 57.1
Ot_Chr1_g04184 Oropetium thomaeum HOM05M005443 ORTHO05M007143 1.6e-72 275.8 294 56.8
Misin08G273600 Miscanthus sinensis HOM05M005443 ORTHO05M007143 1.8e-71 272.3 267 59.2
GWHGAORA025256 Cenchrus purpureus HOM05M005443 ORTHO05M007143 2.3e-71 271.9 290 57.2
Sspon.04G0003550-1A Saccharum spontaneum HOM05M005443 ORTHO05M007143 6.7e-71 270.4 307 53.7
EJB05_20013 Eragrostis curvula HOM05M005443 ORTHO05M007143 7.4e-70 266.9 312 54.2
Misin07G481900 Miscanthus sinensis HOM05M005443 ORTHO05M007143 1.1e-68 263.1 290 56.2
Zm00001eb194590 Zea mays B73 HOM05M005443 ORTHO05M007143 1.4e-65 252.7 292 53.1
GWHGAORA060715 Cenchrus purpureus HOM05M005443 ORTHO05M007143 3.9e-63 244.6 269 55.8
PH02Gene01055 Phyllostachys edulis HOM05M005443 ORTHO05M007143 5.1e-63 244.2 292 50.3
GWHGAZTO020751 Oryza alta HOM05M005443 ORTHO05M007143 9.1e-60 233.4 287 49.1
OsKitaake02g330900 Oryza sativa Kitaake HOM05M005443 ORTHO05M007143 2.9e-58 228.4 287 48.4
OsR498G0204759300.01 Oryza sativa ssp. indica HOM05M005443 ORTHO05M007143 2.9e-58 228.4 287 48.4
Os02g0744100 Oryza sativa ssp. japonica HOM05M005443 ORTHO05M007143 2.9e-58 228.4 287 48.4
GWHGAZTO072375 Oryza alta HOM05M005443 ORTHO05M007143 3.8e-58 228.0 287 48.1
Dexi1A01G0029400 Digitaria exilis HOM05M005443 ORTHO05M007143 1.8e-55 219.2 317 46.4
AET6Gv20761900 Aegilops tauschii HOM05M005443 ORTHO05M007143 3.0e-55 218.4 289 48.1
TraesCS6D03G0681200 Triticum aestivum HOM05M005443 ORTHO05M007143 3.0e-55 218.4 289 48.1
TraesCS6B03G0954500 Triticum aestivum HOM05M005443 ORTHO05M007143 8.8e-55 216.9 289 47.4
TRITD6Bv1G179650 Triticum turgidum HOM05M005443 ORTHO05M007143 8.8e-55 216.9 289 47.4
TRIDC6BG054030 Triticum dicoccoides HOM05M005443 ORTHO05M007143 1.5e-54 216.1 289 47.1
Horvu_MOREX_6H01G472300 Hordeum vulgare HOM05M005443 ORTHO05M007143 1.3e-53 213.0 289 47.1
GWHGASIY033146 Secale cereale HOM05M005443 ORTHO05M007143 1.7e-53 212.6 289 47.4
TraesCS6A03G0805200 Triticum aestivum HOM05M005443 ORTHO05M007143 2.8e-53 211.8 309 45.3
TRITD6Av1G189390 Triticum turgidum HOM05M005443 ORTHO05M007143 2.8e-53 211.8 309 45.3
V3.Lp_chr6_0G15820 Lolium perenne HOM05M005443 ORTHO05M007143 1.8e-52 209.1 295 46.8
Bradi3g59480 Brachypodium distachyon HOM05M005443 ORTHO05M007143 2.0e-51 205.7 295 46.1
OB02G39260 Oryza brachyantha HOM05M005443 ORTHO05M007143 8.0e-40 167.2 222 45.0
CALSI_Maker00037093 Calamus simplicifolius HOM05M005443 ORTHO05M007143 1.8e-39 166.0 241 39.8
Aco001087 Ananas comosus HOM05M005443 ORTHO05M007143 3.1e-36 155.2 221 42.1
TRIDC6AG046350 Triticum dicoccoides HOM05M005443 ORTHO05M007143 2.0e-35 152.5 146 58.9
MBI05_g10765_MAGBIO Magnolia biondii HOM05M005443 ORTHO05M007143 5.9e-35 151.0 297 35.7
Ma06_g04250 Musa acuminata HOM05M005443 ORTHO05M007143 1.0e-34 150.2 284 37.0
Solyc06g084030.3 Solanum lycopersicum HOM05M005443 ORTHO05M007143 6.5e-34 147.5 257 38.5
p5.00_sc00035_p0100 Elaeis guineensis HOM05M005443 ORTHO05M007143 7.2e-33 144.1 286 37.1
Glyma.02G109300 Glycine max HOM05M005443 ORTHO05M007143 8.0e-32 140.6 256 35.2
ATR0564G196 Amborella trichopoda HOM05M005443 ORTHO05M007143 4.0e-31 138.3 260 36.5
p5.00_sc00035_p0099 Elaeis guineensis HOM05M005443 ORTHO05M007143 4.0e-31 138.3 262 36.6
Spipo4G0052500 Spirodela polyrhiza HOM05M005443 ORTHO05M007143 1.5e-30 136.3 263 35.0
CALSI_Maker00037084 Calamus simplicifolius HOM05M005443 ORTHO05M007143 8.3e-29 130.6 97 58.8
HPP92_016837 Vanilla planifolia HOM05M005443 ORTHO05M007143 3.1e-28 128.6 291 34.7
DDU344G0019 Dioscorea dumetorum HOM05M005443 ORTHO05M007143 4.1e-28 128.3 268 34.3
Potri.008G088500 Populus trichocarpa HOM05M005443 ORTHO05M007143 5.4e-28 127.9 290 33.8
DDU049G0257 Dioscorea dumetorum HOM05M005443 ORTHO05M007143 3.8e-26 121.7 236 34.7
CDE04G1474 Ceratophyllum demersum HOM05M005443 ORTHO05M007143 2.1e-24 115.9 262 32.8
CDE06G2440 Ceratophyllum demersum HOM05M005443 ORTHO05M007143 1.0e-23 113.6 227 33.0
AT1G69523 Arabidopsis thaliana HOM05M005443 ORTHO05M007143 2.0e-22 109.4 255 32.5
SEGI_35280 Sequoiadendron giganteum HOM05M005443 ORTHO05M007143 8.3e-21 104.0 156 39.1
SMO239G0167 Selaginella moellendorffii HOM05M005443 ORTHO05M007143 2.0e-19 99.4 262 29.8
AagrBONN_evm.TU.Sc2ySwM_368.914 Anthoceros agrestis HOM05M005443 ORTHO05M007143 1.7e-18 96.3 278 30.2
Pp3c24_6910 Physcomitrium patens HOM05M005443 ORTHO05M007143 2.3e-18 95.9 219 31.1
AT1G69526 Arabidopsis thaliana HOM05M005443 ORTHO05M007143 5.0e-18 94.7 148 43.2
Sspon.04G0003550-1P Saccharum spontaneum HOM05M005443 ORTHO05M007143 8.6e-18 94.0 89 64.0
CBR_g41443 Chara braunii HOM05M005443 ORTHO05M007143 1.6e-16 89.7 92 50.0
Mapoly0002s0191 Marchantia polymorpha HOM05M005443 ORTHO05M007143 2.8e-16 89.0 267 30.3
Zm00007a00011318 Zea mays B104 HOM05M014645 ORTHO05M020405 1.0e-15 87.0 55 76.4
AT1G69520 Arabidopsis thaliana HOM05M005443 ORTHO05M007143 1.2e-14 83.6 134 38.8
Zosma02g19650 Zostera marina HOM05M005443 ORTHO05M001580 3.2e-12 75.5 248 31.0
Zm00007a00003508 Zea mays B104 HOM05M014645 ORTHO05M020405 1.3e-10 70.1 91 48.4
Zm00007a00006052 Zea mays B104 HOM05M014645 ORTHO05M020405 2.3e-10 69.3 91 48.4
evm.TU.AsparagusV1_08.2519.V1.1 Asparagus officinalis HOM05M005443 ORTHO05M007143 5.0e-10 68.2 178 30.9
CDE08G0834 Ceratophyllum demersum HOM05M005443 ORTHO05M007143 1.1e-09 67.0 65 50.8
CALSI_Maker00037126 Calamus simplicifolius HOM05M005443 ORTHO05M007143 2.5e-09 65.9 73 50.7
SMO137G0248 Selaginella moellendorffii HOM05M005443 ORTHO05M007143 3.3e-09 65.5 91 40.7
MCO03G556 Micromonas commoda HOM05M005443 ORTHO05M007143 5.6e-09 64.7 115 39.1
Zm00001eb097680 Zea mays B73 HOM05M014645 ORTHO05M020405 4.0e-07 58.5 37 75.7
PRCOL_00000783 Prasinoderma coloniale HOM05M005443 ORTHO05M007143 4.4e-06 55.1 80 40.0


User provided reference genes

Program Settings