Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zjn_sc00011.1.g04500.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM05M006119 ORTHO05M007560 4.4e-172 607.1 300 100.0
Sspon.03G0020520-1A Saccharum spontaneum HOM05M006119 ORTHO05M007560 9.5e-58 227.3 236 54.7
Pahal.5G474900 Panicum hallii HOM05M006119 ORTHO05M007560 7.8e-52 207.6 309 42.7
EJB05_31560 Eragrostis curvula HOM05M006119 ORTHO05M007560 3.9e-51 205.3 309 43.0
GWHGAORA033526 Cenchrus purpureus HOM05M006119 ORTHO05M007560 6.6e-51 204.5 309 43.0
GWHGAZTO041220 Oryza alta HOM05M006119 ORTHO05M007560 6.6e-51 204.5 247 49.8
Misin05G072300 Miscanthus sinensis HOM05M006119 ORTHO05M007560 1.5e-50 203.4 309 42.7
OsKitaake01g035600 Oryza sativa Kitaake HOM05M006119 ORTHO05M007560 1.5e-50 203.4 309 42.4
OsR498G0100183900.01 Oryza sativa ssp. indica HOM05M006119 ORTHO05M007560 1.5e-50 203.4 309 42.4
Os01g0151600 Oryza sativa ssp. japonica HOM05M006119 ORTHO05M007560 1.5e-50 203.4 309 42.4
Sobic.003G070700 Sorghum bicolor HOM05M006119 ORTHO05M007560 4.3e-50 201.8 309 42.4
GWHGAORA041555 Cenchrus purpureus HOM05M006119 ORTHO05M007560 3.6e-49 198.7 309 42.4
OB01G13240 Oryza brachyantha HOM05M006119 ORTHO05M007560 4.7e-49 198.4 309 41.4
Ot_Chr3_g07132 Oropetium thomaeum HOM05M006119 ORTHO05M007560 6.2e-49 198.0 309 42.7
Sevir.5G102100 Setaria viridis HOM05M006119 ORTHO05M007560 8.1e-49 197.6 309 41.7
PH02Gene46570 Phyllostachys edulis HOM05M006119 ORTHO05M007560 3.1e-48 195.7 309 41.4
GWHGASIY001553 Secale cereale HOM05M006119 ORTHO05M007560 3.1e-48 195.7 311 40.2
GWHGASIY013035 Secale cereale HOM05M006119 ORTHO05M007560 3.1e-48 195.7 311 40.2
Bradi2g03370 Brachypodium distachyon HOM05M006119 ORTHO05M007560 6.8e-48 194.5 309 40.8
Horvu_MOREX_3H01G082400 Hordeum vulgare HOM05M006119 ORTHO05M007560 6.8e-48 194.5 311 39.9
AET3Gv20170000 Aegilops tauschii HOM05M006119 ORTHO05M007560 2.6e-47 192.6 311 39.5
TraesCS3D03G0151700 Triticum aestivum HOM05M006119 ORTHO05M007560 2.6e-47 192.6 311 39.5
V3.Lp_chr3_0G3162 Lolium perenne HOM05M006119 ORTHO05M007560 4.4e-47 191.8 309 39.8
TraesCS3A03G0168300 Triticum aestivum HOM05M006119 ORTHO05M007560 7.6e-47 191.0 311 39.2
TRIDC3AG009120 Triticum dicoccoides HOM05M006119 ORTHO05M007560 7.6e-47 191.0 311 39.2
TRITD3Av1G021320 Triticum turgidum HOM05M006119 ORTHO05M007560 7.6e-47 191.0 311 39.2
TraesCS3B03G0211900 Triticum aestivum HOM05M006119 ORTHO05M007560 9.9e-47 190.7 311 39.2
TRIDC3BG012820 Triticum dicoccoides HOM05M006119 ORTHO05M007560 9.9e-47 190.7 311 39.2
Sspon.03G0020520-3C Saccharum spontaneum HOM05M006119 ORTHO05M007560 6.4e-46 188.0 144 70.1
Zm00007a00017608 Zea mays B104 HOM05M006119 ORTHO05M007560 9.2e-45 184.1 294 41.5
Sspon.03G0020520-4D Saccharum spontaneum HOM05M000063 ORTHO05M001529 2.3e-43 179.5 174 62.6
Zjn_sc00005.1.g05780.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M006119 ORTHO05M007560 8.6e-43 177.6 228 51.3
Zm00001eb124290 Zea mays B73 HOM05M006119 ORTHO05M007560 1.1e-42 177.2 308 40.6
CALSI_Maker00018421 Calamus simplicifolius HOM05M006119 ORTHO05M007560 9.9e-39 164.1 288 37.2
DDU815G0001 Dioscorea dumetorum HOM05M006119 ORTHO05M007560 2.9e-38 162.5 309 34.6
p5.00_sc00069_p0106 Elaeis guineensis HOM05M006119 ORTHO05M007560 2.9e-38 162.5 309 34.6
evm.TU.AsparagusV1_02.165.V1.1 Asparagus officinalis HOM05M006119 ORTHO05M007560 7.1e-37 157.9 309 33.7
Sspon.03G0020520-2B Saccharum spontaneum HOM05M006119 ORTHO05M007560 2.1e-36 156.4 137 62.0
GWHGAZTO053285 Oryza alta HOM05M006119 ORTHO05M007560 4.6e-36 155.2 295 36.3
Glyma.11G141400 Glycine max HOM05M006119 ORTHO05M007560 7.8e-36 154.5 312 33.3
Seita.5G104400 Setaria italica HOM05M006119 ORTHO05M007560 7.8e-36 154.5 275 37.1
EJB05_31561 Eragrostis curvula HOM05M006119 ORTHO05M007560 6.6e-35 151.4 168 54.2
Glyma.12G064800 Glycine max HOM05M006119 ORTHO05M007560 2.5e-34 149.4 312 33.0
Aco017634 Ananas comosus HOM05M006119 ORTHO05M007560 5.6e-34 148.3 332 31.0
Potri.001G237000 Populus trichocarpa HOM05M006119 ORTHO05M007560 7.3e-34 147.9 309 32.0
HPP92_015526 Vanilla planifolia HOM05M006119 ORTHO05M007560 9.6e-34 147.5 309 33.0
Solyc11g073300.2 Solanum lycopersicum HOM05M006119 ORTHO05M007560 2.8e-33 146.0 308 31.8
MBI14_g18541_MAGBIO Magnolia biondii HOM05M006119 ORTHO05M007560 5.3e-32 141.7 311 32.2
Ma06_g35060 Musa acuminata HOM05M006119 ORTHO05M007560 5.3e-32 141.7 309 31.4
Ma09_g04000 Musa acuminata HOM05M006119 ORTHO05M007560 9.0e-32 141.0 309 32.0
Potri.009G028500 Populus trichocarpa HOM05M006119 ORTHO05M007560 1.3e-30 137.1 309 30.1
DDU743G0171 Dioscorea dumetorum HOM05M006119 ORTHO05M007560 3.8e-30 135.6 171 45.6
Asa3G01265 Allium sativum HOM05M006119 ORTHO05M007560 8.4e-30 134.4 171 43.9
Zosma06g24850 Zostera marina HOM05M006119 ORTHO05M007560 7.1e-29 131.3 309 30.1
AT5G59960 Arabidopsis thaliana HOM05M006119 ORTHO05M007560 9.3e-29 131.0 309 31.1
ATR0559G318 Amborella trichopoda HOM05M006119 ORTHO05M007560 6.2e-25 118.2 97 57.7
CDE07G1169 Ceratophyllum demersum HOM05M006119 ORTHO05M007560 3.4e-23 112.5 99 52.5
Mapoly0001s0555 Marchantia polymorpha HOM05M006119 ORTHO05M007560 3.9e-19 99.0 100 50.0
Asa3G01165 Allium sativum HOM05M006119 ORTHO05M007560 1.5e-18 97.1 138 38.4
Pp3c24_20310 Physcomitrium patens HOM05M006119 ORTHO05M007560 8.1e-17 91.3 103 45.6
Pp3c8_24390 Physcomitrium patens HOM05M006119 ORTHO05M007560 1.8e-16 90.1 109 46.8
Spipo23G0022200 Spirodela polyrhiza HOM05M006119 ORTHO05M007560 1.8e-16 90.1 248 28.2
CBR_g46654 Chara braunii HOM05M006119 ORTHO05M007560 1.5e-15 87.0 124 38.7
SMO118G0033 Selaginella moellendorffii HOM05M006119 ORTHO05M007560 2.6e-15 86.3 100 45.0
Dexi5B01G0006890 Digitaria exilis HOM05M006119 ORTHO05M007560 4.2e-13 79.0 32 96.9
Asa2G01730 Allium sativum HOM05M006119 ORTHO05M007560 7.1e-13 78.2 99 40.4
Asa2G06988 Allium sativum HOM05M006119 ORTHO05M007560 7.1e-13 78.2 99 40.4
Asa7G07651 Allium sativum HOM05M006119 ORTHO05M007560 7.1e-13 78.2 99 40.4
EJB05_31557 Eragrostis curvula HOM05M006119 ORTHO05M007560 3.5e-12 75.9 50 80.0
Asa2G02366 Allium sativum HOM05M006119 ORTHO05M007560 1.8e-11 73.6 63 54.0
Asa3G01125 Allium sativum HOM05M006119 ORTHO05M007560 5.1e-11 72.0 63 52.4
AagrBONN_evm.TU.Sc2ySwM_344.5355 Anthoceros agrestis HOM05M006119 ORTHO05M007560 7.4e-10 68.2 56 53.6


User provided reference genes

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