Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zjn_sc00010.1.g03190.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM05M003603 ORTHO05M005000 2.1e-197 691.4 347 100.0
Zm00001eb411740 Zea mays B73 HOM05M003603 ORTHO05M005000 1.9e-179 631.7 370 85.9
EJB05_54820 Eragrostis curvula HOM05M003603 ORTHO05M005000 2.2e-175 618.2 431 76.1
Zjn_sc00151.1.g00180.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M003603 ORTHO05M005000 4.9e-175 617.1 430 76.0
EJB05_16298 Eragrostis curvula HOM05M003603 ORTHO05M005000 6.4e-175 616.7 431 75.9
Ot_Chr2_g10655 Oropetium thomaeum HOM05M003603 ORTHO05M005000 6.4e-175 616.7 431 76.1
EJB05_02937 Eragrostis curvula HOM05M003603 ORTHO05M005000 1.3e-172 609.0 431 75.6
EJB05_02952 Eragrostis curvula HOM05M003603 ORTHO05M005000 1.3e-172 609.0 431 75.6
Ot_Chr6_g12193 Oropetium thomaeum HOM05M003603 ORTHO05M005000 1.8e-172 608.6 430 74.9
Sobic.008G083400 Sorghum bicolor HOM05M003603 ORTHO05M005000 1.9e-171 605.1 431 74.0
Sspon.07G0037760-1P Saccharum spontaneum HOM05M003603 ORTHO05M005000 5.6e-171 603.6 431 73.8
Pahal.3G064100 Panicum hallii HOM05M003603 ORTHO05M005000 1.3e-170 602.4 431 74.2
Sspon.07G0037760-2P Saccharum spontaneum HOM05M003603 ORTHO05M005000 2.8e-170 601.3 431 73.5
Seita.3G090300 Setaria italica HOM05M003603 ORTHO05M005000 6.9e-169 596.7 431 73.8
Sevir.3G092300 Setaria viridis HOM05M003603 ORTHO05M005000 6.9e-169 596.7 431 73.8
Zm00007a00050678 Zea mays B104 HOM05M003603 ORTHO05M005000 1.5e-168 595.5 425 73.6
MisinT473800 Miscanthus sinensis HOM05M003603 ORTHO05M005000 2.0e-168 595.1 425 73.6
GWHGAORA005054 Cenchrus purpureus HOM05M003603 ORTHO05M005000 3.4e-168 594.3 431 72.9
Sspon.07G0037760-1D Saccharum spontaneum HOM05M003603 ORTHO05M005000 3.4e-168 594.3 425 73.6
GWHGAORA039926 Cenchrus purpureus HOM05M003603 ORTHO05M005000 1.8e-164 582.0 431 72.2
GWHGAZTO014151 Oryza alta HOM05M003603 ORTHO05M005000 1.5e-163 578.9 433 71.1
GWHGAZTO066056 Oryza alta HOM05M003603 ORTHO05M005000 5.7e-163 577.0 433 70.9
OsKitaake12g078600 Oryza sativa Kitaake HOM05M003603 ORTHO05M005000 5.7e-163 577.0 433 70.9
Os12g0235800 Oryza sativa ssp. japonica HOM05M003603 ORTHO05M005000 5.7e-163 577.0 433 70.9
PH02Gene36399 Phyllostachys edulis HOM05M003603 ORTHO05M005000 1.1e-161 572.8 433 70.9
OB12G16350 Oryza brachyantha HOM05M003603 ORTHO05M005000 1.4e-161 572.4 431 70.3
V3.Lp_chr1_0G13156 Lolium perenne HOM05M003603 ORTHO05M005000 4.1e-161 570.9 430 70.0
Bradi4g01920 Brachypodium distachyon HOM05M003603 ORTHO05M005000 1.3e-159 565.8 431 69.4
GWHGASIY003271 Secale cereale HOM05M003603 ORTHO05M005000 5.0e-159 563.9 430 69.3
TraesCS1A03G0637500 Triticum aestivum HOM05M003603 ORTHO05M005000 5.0e-159 563.9 430 69.3
TraesCS1B03G0725000 Triticum aestivum HOM05M003603 ORTHO05M005000 5.0e-159 563.9 430 69.3
TRITD1Av1G158260 Triticum turgidum HOM05M003603 ORTHO05M005000 5.0e-159 563.9 430 69.3
Horvu_MOREX_1H01G396300 Hordeum vulgare HOM05M003603 ORTHO05M005000 8.5e-159 563.1 430 69.1
TraesCS1D03G0596300 Triticum aestivum HOM05M003603 ORTHO05M005000 1.4e-158 562.4 430 69.1
TRITD1Bv1G144290 Triticum turgidum HOM05M003603 ORTHO05M005000 4.2e-158 560.8 400 72.8
PH02Gene36307 Phyllostachys edulis HOM05M003603 ORTHO05M005000 7.9e-157 556.6 433 68.8
CALSI_Maker00003078 Calamus simplicifolius HOM05M003603 ORTHO05M005000 1.5e-152 542.3 344 77.6
Misin14G070100 Miscanthus sinensis HOM05M003603 ORTHO05M005000 7.2e-150 533.5 397 71.5
p5.00_sc00034_p0167 Elaeis guineensis HOM05M003603 ORTHO05M005000 1.8e-145 518.8 411 65.7
Aco003488 Ananas comosus HOM05M003603 ORTHO05M005000 2.4e-145 518.5 432 64.1
Ma02_g22830 Musa acuminata HOM05M003603 ORTHO05M005000 5.3e-145 517.3 421 65.3
p5.00_sc00006_p0054 Elaeis guineensis HOM05M003603 ORTHO05M005000 2.0e-144 515.4 434 63.8
evm.TU.AsparagusV1_01.975.V1.1 Asparagus officinalis HOM05M003603 ORTHO05M005000 2.6e-144 515.0 418 64.6
CALSI_Maker00034413 Calamus simplicifolius HOM05M003603 ORTHO05M005000 5.9e-144 513.8 431 63.6
Potri.010G239000 Populus trichocarpa HOM05M003603 ORTHO05M005000 7.7e-144 513.5 405 67.2
Aco008081 Ananas comosus HOM05M003603 ORTHO05M005000 1.0e-143 513.1 413 64.9
Potri.008G020200 Populus trichocarpa HOM05M003603 ORTHO05M005000 6.5e-143 510.4 405 66.7
evm.TU.AsparagusV1_06.286.V1.1 Asparagus officinalis HOM05M003603 ORTHO05M005000 3.2e-142 508.1 421 63.9
Glyma.17G128600 Glycine max HOM05M003603 ORTHO05M005000 4.2e-142 507.7 430 63.5
Glyma.05G046700 Glycine max HOM05M003603 ORTHO05M005000 5.5e-142 507.3 430 63.0
Glyma.05G046900 Glycine max HOM05M003603 ORTHO05M005000 9.4e-142 506.5 404 65.6
Spipo7G0051300 Spirodela polyrhiza HOM05M003603 ORTHO05M005000 9.4e-142 506.5 431 62.2
Glyma.05G236000 Glycine max HOM05M003603 ORTHO05M005000 3.6e-141 504.6 406 65.5
OsR498G1221171700.01 Oryza sativa ssp. indica HOM05M003603 ORTHO05M005000 8.0e-141 503.4 302 83.4
Solyc05g012270.3 Solanum lycopersicum HOM05M003603 ORTHO05M005000 8.0e-141 503.4 404 64.6
DDU469G0256 Dioscorea dumetorum HOM05M003603 ORTHO05M005000 1.4e-140 502.7 413 63.4
Asa8G01441 Allium sativum HOM05M003603 ORTHO05M005000 1.8e-140 502.3 405 64.4
Zosma03g29060 Zostera marina HOM05M003603 ORTHO05M005000 2.3e-140 501.9 405 64.9
HPP92_001262 Vanilla planifolia HOM05M003603 ORTHO05M005000 3.9e-140 501.1 402 63.9
Asa4G05350 Allium sativum HOM05M003603 ORTHO05M005000 4.4e-139 497.7 416 63.2
AT4G24830 Arabidopsis thaliana HOM05M003603 ORTHO05M005000 1.8e-137 492.3 412 62.4
ATR1149G068 Amborella trichopoda HOM05M003603 ORTHO05M005000 2.4e-137 491.9 405 63.5
Pp3c1_33150 Physcomitrium patens HOM05M003603 ORTHO05M005000 1.1e-134 483.0 420 62.1
SEGI_40301 Sequoiadendron giganteum HOM05M003603 ORTHO05M005000 7.2e-134 480.3 411 61.1
CDE09G1413 Ceratophyllum demersum HOM05M003603 ORTHO05M005000 1.0e-132 476.5 408 62.5
CBR_g61477 Chara braunii HOM05M003603 ORTHO05M005000 2.3e-132 475.3 440 58.9
SEGI_19712 Sequoiadendron giganteum HOM05M003603 ORTHO05M005000 8.8e-132 473.4 411 60.6
AagrBONN_evm.TU.Sc2ySwM_228.4817 Anthoceros agrestis HOM05M003603 ORTHO05M005000 1.7e-130 469.2 420 61.0
SMO356G0518 Selaginella moellendorffii HOM05M003603 ORTHO05M005000 1.0e-127 459.9 417 59.5
MBI08_g11776_MAGBIO Magnolia biondii HOM05M003603 ORTHO05M005000 3.8e-127 458.0 542 49.8
Mapoly0038s0028 Marchantia polymorpha HOM05M003603 ORTHO05M005000 1.1e-126 456.4 422 58.3
HPP92_001246 Vanilla planifolia HOM05M003603 ORTHO05M005000 1.0e-124 449.9 302 73.2
GWHGAORA039925 Cenchrus purpureus HOM05M003603 ORTHO05M005000 5.6e-94 347.8 301 64.8
Pp3c12_4480 Physcomitrium patens HOM05M003603 ORTHO05M005000 1.1e-92 343.6 399 52.4
Cre09.g416050 Chlamydomonas reinhardtii HOM05M003603 ORTHO05M005000 2.7e-88 328.9 394 44.9
SMO356G0112 Selaginella moellendorffii HOM05M003603 ORTHO05M005000 5.1e-87 324.7 393 50.6
PRCOL_00001450 Prasinoderma coloniale HOM05M003603 ORTHO05M005000 2.4e-84 315.8 396 44.7
Dexi3B01G0006280 Digitaria exilis HOM05M003603 ORTHO05M005000 2.0e-83 312.8 175 88.6
Misin16G154100 Miscanthus sinensis HOM05M003603 ORTHO05M005000 3.1e-76 288.9 218 72.0
Zosma07g00830 Zostera marina HOM05M003603 ORTHO05M005000 5.6e-70 268.1 287 47.4
AET1Gv20598500 Aegilops tauschii HOM05M003603 ORTHO05M005000 1.8e-63 246.5 248 56.0
TRIDC1AG037030 Triticum dicoccoides HOM05M003603 ORTHO05M005000 1.8e-63 246.5 248 56.0
TRIDC1BG041990 Triticum dicoccoides HOM05M003603 ORTHO05M005000 1.8e-63 246.5 248 56.0
Dexi3A01G0006330 Digitaria exilis HOM05M003603 ORTHO05M005000 3.7e-61 238.8 143 84.6
Asa8G01440 Allium sativum HOM05M003603 ORTHO05M005000 9.3e-57 224.2 145 75.2
Dexi3B01G0006270 Digitaria exilis HOM05M003603 ORTHO05M005000 1.6e-56 223.4 194 62.9
GWHGAZTO011430 Oryza alta HOM05M003603 ORTHO05M005000 1.3e-55 220.3 134 84.3
Glyma.08G043400 Glycine max HOM05M003603 ORTHO05M005000 3.3e-54 215.7 144 75.0
Os11g0303050 Oryza sativa ssp. japonica HOM05M003603 ORTHO05M005000 5.3e-52 208.4 127 78.0
GWHGAORA039924 Cenchrus purpureus HOM05M003603 ORTHO05M005000 1.6e-45 186.8 104 84.6
Asa8G01675 Allium sativum HOM05M003603 ORTHO05M043352 2.0e-30 136.7 158 48.7
Bradi2g26460 Brachypodium distachyon HOM05M003603 ORTHO05M023812 1.1e-28 131.0 97 69.1
Asa6G03566 Allium sativum HOM05M003603 ORTHO05M043134 1.9e-25 120.2 100 58.0
Glyma.08G043450 Glycine max HOM05M003603 ORTHO05M023812 1.9e-25 120.2 65 84.6
OsR498G1119884900.01 Oryza sativa ssp. indica HOM05M003603 ORTHO05M005000 4.2e-25 119.0 70 81.4
Asa1G00158 Allium sativum HOM05M003603 ORTHO05M040642 4.7e-24 115.5 160 45.0
PH02Gene51455 Phyllostachys edulis HOM05M003603 ORTHO05M005000 2.6e-22 109.8 75 74.7
OsR498G1119884700.01 Oryza sativa ssp. indica HOM05M003603 ORTHO05M197931 1.7e-18 97.1 109 53.2
Asa1G00146 Allium sativum HOM05M003603 ORTHO05M005000 7.2e-17 91.7 74 64.9
Asa2G03976 Allium sativum HOM05M003603 ORTHO05M043210 1.2e-14 84.3 145 40.7
MisinT429800 Miscanthus sinensis HOM05M003603 ORTHO05M023812 2.9e-10 69.7 34 91.2
Asa8G03565 Allium sativum HOM05M003603 ORTHO05M046844 4.2e-09 65.9 53 58.5
GWHGAZTO011429 Oryza alta HOM05M003603 ORTHO05M175413 5.7e-06 55.5 33 81.8


User provided reference genes

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