Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zjn_sc00007.1.g11430.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM05M002741 ORTHO05M003063 8.6e-151 536.2 269 100.0
Zjn_sc00007.1.g11450.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M002741 ORTHO05M003063 9.0e-108 393.3 264 78.4
EJB05_20632 Eragrostis curvula HOM05M002741 ORTHO05M003063 1.5e-94 349.4 351 59.3
Ot_Chr1_g02839 Oropetium thomaeum HOM05M002741 ORTHO05M003063 1.1e-92 343.2 362 55.8
Sobic.004G225200 Sorghum bicolor HOM05M002741 ORTHO05M003063 5.5e-89 330.9 362 53.3
AET6Gv20612900 Aegilops tauschii HOM05M002741 ORTHO05M003063 8.7e-87 323.6 360 53.1
GWHGAORA024598 Cenchrus purpureus HOM05M002741 ORTHO05M003063 4.3e-86 321.2 362 52.2
Bradi3g49630 Brachypodium distachyon HOM05M002741 ORTHO05M003063 1.6e-85 319.3 360 52.2
TraesCS6B03G0765700 Triticum aestivum HOM05M002741 ORTHO05M003063 1.6e-85 319.3 360 52.5
GWHGAORA059944 Cenchrus purpureus HOM05M002741 ORTHO05M003063 4.8e-85 317.8 362 51.9
TraesCS6B03G0765400 Triticum aestivum HOM05M002741 ORTHO05M003063 4.8e-85 317.8 360 52.2
Horvu_MOREX_6H01G353300 Hordeum vulgare HOM05M002741 ORTHO05M003063 1.1e-84 316.6 360 52.2
TraesCS6D03G0532500 Triticum aestivum HOM05M002741 ORTHO05M003063 1.1e-84 316.6 364 51.9
TRITD6Bv1G136470 Triticum turgidum HOM05M002741 ORTHO05M003063 1.1e-84 316.6 360 51.9
TraesCS6A03G0639700 Triticum aestivum HOM05M002741 ORTHO05M003063 1.8e-84 315.8 360 52.2
GWHGASIY032261 Secale cereale HOM05M002741 ORTHO05M003063 9.0e-84 313.5 360 51.9
GWHGASIY032273 Secale cereale HOM05M002741 ORTHO05M003063 9.0e-84 313.5 360 51.9
TRIDC6AG035900 Triticum dicoccoides HOM05M002741 ORTHO05M003063 9.0e-84 313.5 360 51.7
OsKitaake02g260100 Oryza sativa Kitaake HOM05M002741 ORTHO05M003063 1.5e-83 312.8 363 52.1
OsR498G0204383700.01 Oryza sativa ssp. indica HOM05M002741 ORTHO05M003063 1.5e-83 312.8 363 52.1
Os02g0635200 Oryza sativa ssp. japonica HOM05M002741 ORTHO05M003063 1.5e-83 312.8 363 52.1
Zm00001eb185550 Zea mays B73 HOM05M002741 ORTHO05M003063 1.5e-83 312.8 362 51.4
Zm00007a00010952 Zea mays B104 HOM05M002741 ORTHO05M003063 1.5e-83 312.8 362 51.4
V3.Lp_chr6_0G12240 Lolium perenne HOM05M002741 ORTHO05M003063 4.5e-83 311.2 360 50.8
GWHGASIY032268 Secale cereale HOM05M002741 ORTHO05M003063 4.5e-83 311.2 360 51.7
TraesCS6A03G0640300 Triticum aestivum HOM05M002741 ORTHO05M003063 1.3e-82 309.7 360 51.4
Dexi1B01G0019910 Digitaria exilis HOM05M002741 ORTHO05M003063 3.8e-82 308.1 376 50.8
GWHGAZTO019674 Oryza alta HOM05M002741 ORTHO05M003063 5.0e-82 307.8 366 51.6
TRITD6Av1G150150 Triticum turgidum HOM05M002741 ORTHO05M003063 5.0e-82 307.8 358 51.4
Misin08G213500 Miscanthus sinensis HOM05M002741 ORTHO05M003063 8.5e-82 307.0 358 50.8
Pahal.1G319900 Panicum hallii HOM05M002741 ORTHO05M003063 1.9e-81 305.8 362 50.8
TRITD6Av1G150060 Triticum turgidum HOM05M002741 ORTHO05M003063 2.5e-81 305.4 358 51.4
Seita.1G245900 Setaria italica HOM05M002741 ORTHO05M003063 3.0e-79 298.5 362 49.7
Sevir.1G250200 Setaria viridis HOM05M002741 ORTHO05M003063 3.0e-79 298.5 362 49.7
OB02G32560 Oryza brachyantha HOM05M002741 ORTHO05M003063 1.1e-78 296.6 363 50.4
GWHGAZTO071340 Oryza alta HOM05M002741 ORTHO05M003063 3.9e-71 271.6 356 46.3
Ot_Chr1_gn31576 Oropetium thomaeum HOM05M002741 ORTHO05M003063 2.6e-70 268.9 359 46.8
Misin08G213300 Miscanthus sinensis HOM05M002741 ORTHO05M003063 5.7e-70 267.7 359 46.5
TRIDC6AG035880 Triticum dicoccoides HOM05M002741 ORTHO05M003063 7.4e-70 267.3 360 47.2
OB02G32550 Oryza brachyantha HOM05M002741 ORTHO05M003063 9.7e-70 266.9 359 46.8
GWHGAZTO019673 Oryza alta HOM05M002741 ORTHO05M003063 1.7e-69 266.2 356 46.3
GWHGAORA059945 Cenchrus purpureus HOM05M002741 ORTHO05M003063 1.8e-68 262.7 358 45.3
Sobic.004G225000 Sorghum bicolor HOM05M002741 ORTHO05M003063 1.8e-68 262.7 351 46.4
OsKitaake02g260000 Oryza sativa Kitaake HOM05M002741 ORTHO05M003063 2.4e-68 262.3 356 45.5
OsR498G0204383500.01 Oryza sativa ssp. indica HOM05M002741 ORTHO05M003063 2.4e-68 262.3 356 45.5
Os02g0635000 Oryza sativa ssp. japonica HOM05M002741 ORTHO05M003063 2.4e-68 262.3 356 45.5
Dexi1B01G0019900 Digitaria exilis HOM05M002741 ORTHO05M003063 4.1e-68 261.5 349 46.1
Seita.1G245800 Setaria italica HOM05M002741 ORTHO05M003063 7.0e-68 260.8 358 45.3
Sevir.1G250100 Setaria viridis HOM05M002741 ORTHO05M003063 7.0e-68 260.8 358 45.3
Pahal.1G319800 Panicum hallii HOM05M002741 ORTHO05M003063 9.1e-68 260.4 359 45.1
Bradi3g49620 Brachypodium distachyon HOM05M002741 ORTHO05M003063 2.6e-67 258.8 349 46.1
TRIDC6AG035890 Triticum dicoccoides HOM05M002741 ORTHO05M003063 3.5e-67 258.5 362 46.1
V3.Lp_chr6_0G12234 Lolium perenne HOM05M002741 ORTHO05M003063 7.7e-67 257.3 343 47.5
Horvu_MOREX_6H01G353200 Hordeum vulgare HOM05M002741 ORTHO05M003063 1.3e-66 256.5 344 46.5
CALSI_Maker00001231 Calamus simplicifolius HOM05M002741 ORTHO05M003063 2.9e-66 255.4 355 44.5
TRIDC6BG042650 Triticum dicoccoides HOM05M002741 ORTHO05M003063 3.8e-66 255.0 317 47.6
GWHGASIY032262 Secale cereale HOM05M002741 ORTHO05M003063 5.0e-66 254.6 344 46.5
GWHGASIY032267 Secale cereale HOM05M002741 ORTHO05M003063 5.0e-66 254.6 344 46.5
GWHGASIY032272 Secale cereale HOM05M002741 ORTHO05M003063 5.0e-66 254.6 344 46.5
TraesCS6D03G0532400 Triticum aestivum HOM05M002741 ORTHO05M003063 1.9e-65 252.7 344 46.2
TraesCS6B03G0765500 Triticum aestivum HOM05M002741 ORTHO05M003063 2.5e-65 252.3 344 46.2
Dexi1A01G0021360 Digitaria exilis HOM05M002741 ORTHO05M003063 1.2e-64 250.0 342 45.6
Zm00001eb248290 Zea mays B73 HOM05M002741 ORTHO05M003063 1.2e-64 250.0 346 45.1
AET6Gv20612800 Aegilops tauschii HOM05M002741 ORTHO05M003063 1.6e-64 249.6 344 45.9
Misin08G213400 Miscanthus sinensis HOM05M002741 ORTHO05M003063 1.6e-64 249.6 347 44.7
p5.00_sc00163_p0004 Elaeis guineensis HOM05M002741 ORTHO05M003063 2.1e-64 249.2 360 44.2
Zm00007a00036213 Zea mays B104 HOM05M002741 ORTHO05M003063 2.7e-64 248.8 346 44.8
TRITD6Av1G150130 Triticum turgidum HOM05M002741 ORTHO05M003063 6.1e-64 247.7 344 45.6
Aco014001 Ananas comosus HOM05M002741 ORTHO05M003063 8.0e-64 247.3 359 44.6
evm.TU.AsparagusV1_10.1106.V1.1 Asparagus officinalis HOM05M002741 ORTHO05M003063 1.4e-63 246.5 349 45.3
Solyc11g068730.2 Solanum lycopersicum HOM05M002741 ORTHO05M003063 2.3e-63 245.7 357 44.8
Ma08_g13290 Musa acuminata HOM05M002741 ORTHO05M003063 4.0e-63 245.0 356 44.9
Asa1G02252 Allium sativum HOM05M002741 ORTHO05M003063 2.0e-62 242.7 347 45.2
Sspon.04G0024080-1B Saccharum spontaneum HOM05M002741 ORTHO05M003063 2.0e-62 242.7 359 44.3
Spipo16G0031300 Spirodela polyrhiza HOM05M002741 ORTHO05M003063 2.6e-62 242.3 348 44.5
Misin07G418700 Miscanthus sinensis HOM05M002741 ORTHO05M003063 6.3e-61 237.7 347 43.2
MBI17_g34508_MAGBIO Magnolia biondii HOM05M002741 ORTHO05M003063 8.2e-61 237.3 348 44.3
DDU914G0166 Dioscorea dumetorum HOM05M002741 ORTHO05M003063 3.1e-60 235.3 307 47.6
Glyma.11G180900 Glycine max HOM05M002741 ORTHO05M003063 7.0e-60 234.2 350 43.1
Potri.004G199600 Populus trichocarpa HOM05M002741 ORTHO05M003063 2.7e-59 232.3 383 40.5
HPP92_012650 Vanilla planifolia HOM05M002741 ORTHO05M003063 2.7e-59 232.3 348 44.0
MBI17_g11951_MAGBIO Magnolia biondii HOM05M002741 ORTHO05M003063 4.5e-59 231.5 343 44.3
GWHGAORA024597 Cenchrus purpureus HOM05M002741 ORTHO05M003063 5.9e-59 231.1 347 43.2
CALSI_Maker00001233 Calamus simplicifolius HOM05M002741 ORTHO05M003063 2.9e-58 228.8 349 41.5
ATR0772G120 Amborella trichopoda HOM05M002741 ORTHO05M003063 2.5e-57 225.7 344 43.9
Glyma.12G092300 Glycine max HOM05M002741 ORTHO05M003063 4.2e-57 224.9 350 42.0
CDE04G3244 Ceratophyllum demersum HOM05M002741 ORTHO05M003063 7.2e-57 224.2 354 42.7
Sobic.006G153700 Sorghum bicolor HOM05M002741 ORTHO05M003063 6.8e-55 217.6 334 41.3
EJB05_38643 Eragrostis curvula HOM05M002741 ORTHO05M003063 8.8e-55 217.2 339 40.4
TraesCS6A03G0876900 Triticum aestivum HOM05M002741 ORTHO05M003063 1.5e-54 216.5 197 61.4
TRITD6Av1G203600 Triticum turgidum HOM05M002741 ORTHO05M003063 1.5e-54 216.5 197 61.4
Misin11G151200 Miscanthus sinensis HOM05M002741 ORTHO05M003063 2.0e-54 216.1 333 41.4
TRIDC6AG051000 Triticum dicoccoides HOM05M002741 ORTHO05M003063 2.6e-54 215.7 202 59.9
Zjn_sc00056.1.g02810.1.sm.mk Zoysia japonica ssp. nagirizaki HOM05M002741 ORTHO05M003063 2.6e-54 215.7 332 41.3
DDU914G0268 Dioscorea dumetorum HOM05M002741 ORTHO05M003063 4.4e-54 214.9 334 41.6
Sspon.04G0007710-1A Saccharum spontaneum HOM05M002741 ORTHO05M003063 1.3e-53 213.4 356 40.7
Zosma04g21620 Zostera marina HOM05M002741 ORTHO05M003063 4.8e-53 211.5 339 41.6
Pp3c21_15520 Physcomitrium patens HOM05M002741 ORTHO05M003063 1.8e-52 209.5 335 41.5
Sspon.04G0007710-2D Saccharum spontaneum HOM05M002741 ORTHO05M003063 1.7e-50 203.0 265 50.6
ATR0081G064 Amborella trichopoda HOM05M002741 ORTHO05M003063 5.0e-50 201.4 326 40.8
Misin07G418600 Miscanthus sinensis HOM05M002741 ORTHO05M003063 5.0e-50 201.4 113 86.7
GWHGASIY033609 Secale cereale HOM05M002741 ORTHO05M003063 8.5e-50 200.7 218 53.7
AT5G22300 Arabidopsis thaliana HOM05M002741 ORTHO05M003063 1.5e-49 199.9 345 38.6
Mapoly0069s0046 Marchantia polymorpha HOM05M002741 ORTHO05M003063 1.6e-48 196.4 336 38.7
GWHGAZTO071342 Oryza alta HOM05M002741 ORTHO05M003063 4.7e-48 194.9 113 85.0
TRITD6Bv1G136510 Triticum turgidum HOM05M002741 ORTHO05M003063 6.1e-48 194.5 280 46.8
Dexi1A01G0021370 Digitaria exilis HOM05M002741 ORTHO05M003063 4.0e-47 191.8 113 83.2
SMO114G0037 Selaginella moellendorffii HOM05M002741 ORTHO05M003063 1.2e-46 190.3 343 37.0
Mapoly0150s0021 Marchantia polymorpha HOM05M002741 ORTHO05M003063 2.8e-45 185.7 332 37.7
TraesCS6A03G0639800 Triticum aestivum HOM05M002741 ORTHO05M003063 4.9e-45 184.9 322 39.4
AT3G44300 Arabidopsis thaliana HOM05M002741 ORTHO05M003063 3.8e-42 175.3 323 34.4
Misin07G418800 Miscanthus sinensis HOM05M002741 ORTHO05M003063 1.5e-41 173.3 298 39.3
GWHGAZTO071341 Oryza alta HOM05M002741 ORTHO05M003063 1.9e-41 172.9 114 79.8
CDE07G0890 Ceratophyllum demersum HOM05M002741 ORTHO05M003063 7.3e-41 171.0 307 38.4
AT3G44320 Arabidopsis thaliana HOM05M002741 ORTHO05M003063 6.8e-39 164.5 327 32.7
SEGI_37198 Sequoiadendron giganteum HOM05M002741 ORTHO05M003063 8.9e-39 164.1 243 45.7
AT3G44310 Arabidopsis thaliana HOM05M002741 ORTHO05M003063 7.5e-38 161.0 322 32.0
Sspon.04G0024080-2D Saccharum spontaneum HOM05M002741 ORTHO05M003063 1.4e-36 156.8 113 72.6
Sobic.004G225100 Sorghum bicolor HOM05M002741 ORTHO05M003063 1.8e-36 156.4 108 69.4
CBR_g36715 Chara braunii HOM05M002741 ORTHO05M003063 9.2e-36 154.1 321 34.0
CALSI_Maker00048786 Calamus simplicifolius HOM05M002741 ORTHO05M003063 3.9e-34 148.7 114 70.2
Zjn_sc00007.1.g11460.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M002741 ORTHO05M003063 7.3e-33 144.4 110 69.1
Asa6G06550 Allium sativum HOM05M002741 ORTHO05M003063 4.3e-25 118.6 104 64.4
Misin12G155100 Miscanthus sinensis HOM05M002741 ORTHO05M003063 9.5e-25 117.5 99 65.7
Potri.006G207700 Populus trichocarpa HOM05M002741 ORTHO05M003063 1.5e-22 110.2 284 32.0
Potri.016G074200 Populus trichocarpa HOM05M002741 ORTHO05M003063 3.2e-20 102.4 348 29.0
AET6Gv20840100 Aegilops tauschii HOM05M002741 ORTHO05M003063 4.1e-20 102.1 204 37.7
ATR0772G147 Amborella trichopoda HOM05M002741 ORTHO05M003063 3.3e-09 65.9 40 77.5
ATR0579G014 Amborella trichopoda HOM05M002741 ORTHO05M003063 4.3e-09 65.5 118 38.1
Mapoly0038s0103 Marchantia polymorpha HOM05M002741 ORTHO05M003063 8.1e-08 61.2 73 42.5
PH02Gene16938 Phyllostachys edulis HOM05M002741 ORTHO05M003063 8.1e-08 61.2 48 70.8


User provided reference genes

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