Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zjn_sc00007.1.g04300.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM05M005400 ORTHO05M006202 9.3e-76 286.2 161 100.0
EJB05_20095 Eragrostis curvula HOM05M005400 ORTHO05M006202 2.4e-68 261.5 161 90.7
Ot_Chr1_g04249 Oropetium thomaeum HOM05M005400 ORTHO05M006202 9.3e-68 259.6 161 91.3
Zjn_sc00022.1.g00810.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM05M005400 ORTHO05M006202 1.9e-65 251.9 161 90.1
DexiUA01G0007410 Digitaria exilis HOM05M005400 ORTHO05M006202 1.1e-57 226.1 163 84.7
Sspon.04G0022450-1P Saccharum spontaneum HOM05M005400 ORTHO05M006202 3.3e-57 224.6 161 83.2
Sspon.04G0022450-2C Saccharum spontaneum HOM05M005400 ORTHO05M006202 3.3e-57 224.6 161 83.2
Misin07G475200 Miscanthus sinensis HOM05M005400 ORTHO05M006202 5.6e-57 223.8 161 82.6
Sspon.04G0022450-1B Saccharum spontaneum HOM05M005400 ORTHO05M006202 5.6e-57 223.8 159 83.6
Dexi1A01G0028790 Digitaria exilis HOM05M005400 ORTHO05M006202 7.4e-57 223.4 163 83.4
Dexi1B01G0026670 Digitaria exilis HOM05M005400 ORTHO05M006202 7.4e-57 223.4 163 83.4
DexiUA01G0021880 Digitaria exilis HOM05M005400 ORTHO05M006202 7.4e-57 223.4 163 83.4
Misin08G303400 Miscanthus sinensis HOM05M005400 ORTHO05M006202 2.8e-56 221.5 161 82.0
PH02Gene00990 Phyllostachys edulis HOM05M005400 ORTHO05M006202 3.7e-56 221.1 161 81.4
Pahal.1G401200 Panicum hallii HOM05M005400 ORTHO05M006202 8.1e-56 219.9 159 82.4
Sobic.004G231800 Sorghum bicolor HOM05M005400 ORTHO05M006202 8.1e-56 219.9 159 83.0
Seita.1G324700 Setaria italica HOM05M005400 ORTHO05M006202 3.1e-55 218.0 161 80.7
Sevir.1G331400 Setaria viridis HOM05M005400 ORTHO05M006202 3.1e-55 218.0 161 80.7
GWHGAZTO020848 Oryza alta HOM05M005400 ORTHO05M006202 4.0e-55 217.6 162 81.5
GWHGAORA025318 Cenchrus purpureus HOM05M005400 ORTHO05M006202 6.9e-55 216.9 161 80.7
GWHGAORA060782 Cenchrus purpureus HOM05M005400 ORTHO05M006202 2.6e-54 214.9 161 79.5
Zm00007a00005477 Zea mays B104 HOM05M005400 ORTHO05M006202 2.6e-54 214.9 161 80.1
GWHGAORA060789 Cenchrus purpureus HOM05M005400 ORTHO05M006202 3.4e-54 214.5 162 79.0
OB02G39880 Oryza brachyantha HOM05M005400 ORTHO05M006202 3.4e-54 214.5 165 80.6
PH02Gene06489 Phyllostachys edulis HOM05M005400 ORTHO05M006202 3.8e-53 211.1 161 80.1
OsR498G0204795900.01 Oryza sativa ssp. indica HOM05M005400 ORTHO05M006202 4.9e-53 210.7 165 78.2
OsKitaake02g337900 Oryza sativa Kitaake HOM05M005400 ORTHO05M006202 3.2e-52 208.0 165 77.6
Os02g0754300 Oryza sativa ssp. japonica HOM05M005400 ORTHO05M006202 3.2e-52 208.0 165 77.6
TRITD6Bv1G187290 Triticum turgidum HOM05M005400 ORTHO05M006202 7.1e-52 206.8 161 77.0
V3.Lp_chr6_0G16352 Lolium perenne HOM05M005400 ORTHO05M006202 9.3e-52 206.5 160 76.2
TraesCS6A03G0827600 Triticum aestivum HOM05M005400 ORTHO05M006202 9.3e-52 206.5 161 77.0
TRIDC6AG047970 Triticum dicoccoides HOM05M005400 ORTHO05M006202 9.3e-52 206.5 161 77.0
TRITD6Av1G194520 Triticum turgidum HOM05M005400 ORTHO05M006202 9.3e-52 206.5 161 77.0
Bradi3g58780 Brachypodium distachyon HOM05M005400 ORTHO05M006202 1.2e-51 206.1 161 77.0
TraesCS6B03G0985100 Triticum aestivum HOM05M005400 ORTHO05M006202 2.1e-51 205.3 161 76.4
TRIDC6BG055920 Triticum dicoccoides HOM05M005400 ORTHO05M006202 2.7e-51 204.9 161 76.4
Zm00001eb194130 Zea mays B73 HOM05M005400 ORTHO05M006202 1.0e-50 203.0 161 77.0
Zm00001eb255290 Zea mays B73 HOM05M005400 ORTHO05M006202 1.8e-50 202.2 161 76.4
Zm00007a00042441 Zea mays B104 HOM05M005400 ORTHO05M006202 1.8e-50 202.2 161 76.4
GWHGASIY004778 Secale cereale HOM05M005400 ORTHO05M006202 8.7e-50 199.9 161 75.2
TraesCS6D03G0701100 Triticum aestivum HOM05M005400 ORTHO05M006202 1.9e-49 198.7 162 75.9
Horvu_MOREX_6H01G488200 Hordeum vulgare HOM05M005400 ORTHO05M006202 4.3e-49 197.6 162 74.7
GWHGAZTO072470 Oryza alta HOM05M005400 ORTHO05M006202 1.7e-45 185.7 163 72.4
Zm00001eb249540 Zea mays B73 HOM05M005400 ORTHO05M006202 3.9e-42 174.5 105 90.5
Zm00001eb335180 Zea mays B73 HOM05M005400 ORTHO05M006202 3.3e-41 171.4 105 88.6
Zm00007a00015680 Zea mays B104 HOM05M005400 ORTHO05M006202 3.4e-38 161.4 115 84.3
AET6Gv20786300 Aegilops tauschii HOM05M005400 ORTHO05M006202 2.2e-37 158.7 103 83.5
DDU739G0055 Dioscorea dumetorum HOM05M005400 ORTHO05M006202 1.4e-36 156.0 157 61.8
CALSI_Maker00045935 Calamus simplicifolius HOM05M005400 ORTHO05M006202 9.4e-36 153.3 156 60.3
DDU302G0020 Dioscorea dumetorum HOM05M005400 ORTHO05M006202 9.4e-36 153.3 157 61.1
Solyc06g072470.4 Solanum lycopersicum HOM05M005400 ORTHO05M006202 1.6e-35 152.5 109 73.4
evm.TU.AsparagusV1_03.233.V1.1 Asparagus officinalis HOM05M005400 ORTHO05M006202 3.6e-35 151.4 145 61.4
MBI02_g35763_MAGBIO Magnolia biondii HOM05M005400 ORTHO05M006202 7.9e-35 150.2 113 70.8
MBI05_g37050_MAGBIO Magnolia biondii HOM05M005400 ORTHO05M006202 2.3e-34 148.7 101 76.2
Solyc03g097950.4 Solanum lycopersicum HOM05M005400 ORTHO05M006202 2.3e-34 148.7 160 57.5
Glyma.05G178000 Glycine max HOM05M005400 ORTHO05M006202 3.9e-34 147.9 160 57.5
CDE10G0106 Ceratophyllum demersum HOM05M005400 ORTHO05M006202 1.1e-33 146.4 161 55.3
Spipo16G0045000 Spirodela polyrhiza HOM05M005400 ORTHO05M006202 1.5e-33 146.0 110 75.5
Glyma.08G135000 Glycine max HOM05M005400 ORTHO05M006202 2.0e-33 145.6 160 56.2
CDE10G0428 Ceratophyllum demersum HOM05M005400 ORTHO05M006202 3.3e-33 144.8 153 56.9
Potri.007G093700 Populus trichocarpa HOM05M005400 ORTHO05M006202 9.7e-33 143.3 114 66.7
Ma10_g24500 Musa acuminata HOM05M005400 ORTHO05M006202 2.8e-32 141.7 131 64.1
AT5G65220 Arabidopsis thaliana HOM05M005400 ORTHO05M006202 8.2e-32 140.2 163 55.2
Zosma01g29600 Zostera marina HOM05M005400 ORTHO05M006202 3.1e-31 138.3 130 63.8
p5.00_sc00128_p0054 Elaeis guineensis HOM05M005400 ORTHO05M006202 4.1e-31 137.9 136 61.0
Ma07_g12470 Musa acuminata HOM05M005400 ORTHO05M006202 7.7e-30 133.7 159 54.1
SMO347G0042 Selaginella moellendorffii HOM05M005400 ORTHO05M006202 1.5e-25 119.4 95 68.4
Pp3c9_19800 Physcomitrium patens HOM05M005400 ORTHO05M006202 2.0e-25 119.0 153 50.3
Mapoly0011s0026 Marchantia polymorpha HOM05M005400 ORTHO05M006202 1.3e-24 116.3 95 62.1
AagrBONN_evm.TU.Sc2ySwM_117.2528 Anthoceros agrestis HOM05M005400 ORTHO05M006202 1.8e-23 112.5 164 45.1
HPP92_013107 Vanilla planifolia HOM05M005400 ORTHO05M006202 2.0e-17 92.4 125 50.4
CBR_g8034 Chara braunii HOM05M005400 ORTHO05M006202 1.8e-15 85.9 92 48.9
HPP92_013094 Vanilla planifolia HOM05M005400 ORTHO05M006202 3.5e-14 81.6 71 63.4
Zm00007a00003521 Zea mays B104 HOM05M005400 ORTHO05M006202 4.0e-10 68.2 40 87.5
Zm00007a00003528 Zea mays B104 HOM05M000309 ORTHO05M000193 4.0e-10 68.2 40 87.5
Zm00007a00026343 Zea mays B104 HOM05M005400 ORTHO05M000193 4.0e-10 68.2 40 87.5
MBI18_g38162_MAGBIO Magnolia biondii HOM05M005400 ORTHO05M006202 6.8e-10 67.4 70 57.1
MCO09G004 Micromonas commoda HOM05M005400 ORTHO05M006202 3.7e-08 61.6 73 42.5
ATR0782G037 Amborella trichopoda HOM05M005400 ORTHO05M006202 1.1e-07 60.1 96 42.7


User provided reference genes

Program Settings