Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zjn_sc00007.1.g00910.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M005936 ORTHO05M007295 2.6e-203 711.1 355 100.0
EJB05_19219 Eragrostis curvula HOM05M005936 ORTHO05M007295 2.3e-175 618.2 403 79.2
Ot_Chr1_g04645 Oropetium thomaeum HOM05M005936 ORTHO05M007295 1.8e-172 608.6 410 78.3
Pahal.1G447200 Panicum hallii HOM05M005936 ORTHO05M007295 4.0e-172 607.4 409 77.5
Sobic.004G344800 Sorghum bicolor HOM05M005936 ORTHO05M007295 4.4e-171 604.0 409 76.3
Misin07G541500 Miscanthus sinensis HOM05M005936 ORTHO05M007295 7.5e-171 603.2 409 76.5
Misin08G326500 Miscanthus sinensis HOM05M005936 ORTHO05M007295 2.2e-170 601.7 409 76.5
Seita.1G365400 Setaria italica HOM05M005936 ORTHO05M007295 6.4e-170 600.1 409 76.8
Sevir.1G372000 Setaria viridis HOM05M005936 ORTHO05M007295 6.4e-170 600.1 409 76.8
GWHGAORA059207 Cenchrus purpureus HOM05M005936 ORTHO05M007295 2.4e-169 598.2 409 76.3
OB02G43980 Oryza brachyantha HOM05M005936 ORTHO05M007295 7.8e-168 593.2 409 75.8
PH02Gene05892 Phyllostachys edulis HOM05M005936 ORTHO05M007295 1.7e-167 592.0 409 76.5
GWHGAZTO073046 Oryza alta HOM05M005936 ORTHO05M007295 5.1e-167 590.5 409 76.0
GWHGAORA023780 Cenchrus purpureus HOM05M005936 ORTHO05M007295 6.6e-167 590.1 409 75.6
Zm00007a00029806 Zea mays B104 HOM05M005936 ORTHO05M007295 8.6e-167 589.7 409 75.6
GWHGAZTO021431 Oryza alta HOM05M005936 ORTHO05M007295 1.9e-166 588.6 409 75.6
OsKitaake02g383400 Oryza sativa Kitaake HOM05M005936 ORTHO05M007295 1.4e-164 582.4 410 75.1
OsR498G0205007100.01 Oryza sativa ssp. indica HOM05M005936 ORTHO05M007295 1.4e-164 582.4 410 75.1
Os02g0816800 Oryza sativa ssp. japonica HOM05M005936 ORTHO05M007295 1.4e-164 582.4 410 75.1
PH02Gene10960 Phyllostachys edulis HOM05M005936 ORTHO05M007295 1.3e-162 575.9 400 75.2
Bradi3g55340 Brachypodium distachyon HOM05M005936 ORTHO05M007295 1.2e-160 569.3 409 73.1
Horvu_MOREX_6H01G575700 Hordeum vulgare HOM05M005936 ORTHO05M007295 8.1e-157 556.6 407 71.5
TraesCS6B03G1203300 Triticum aestivum HOM05M005936 ORTHO05M007295 9.0e-156 553.1 407 71.0
TRIDC6BG067380 Triticum dicoccoides HOM05M005936 ORTHO05M007295 9.0e-156 553.1 407 71.0
TRITD6Av1G219120 Triticum turgidum HOM05M005936 ORTHO05M007295 9.0e-156 553.1 404 71.3
TRITD6Bv1G219030 Triticum turgidum HOM05M005936 ORTHO05M007295 9.0e-156 553.1 407 71.0
Sspon.04G0035140-1P Saccharum spontaneum HOM05M005936 ORTHO05M007295 1.5e-155 552.4 358 78.2
TraesCS6A03G0979600 Triticum aestivum HOM05M005936 ORTHO05M007295 1.5e-155 552.4 407 71.0
TRIDC6AG057620 Triticum dicoccoides HOM05M005936 ORTHO05M007295 1.5e-155 552.4 407 71.0
GWHGASIY034050 Secale cereale HOM05M005936 ORTHO05M007295 2.6e-155 551.6 404 71.3
TraesCS6D03G0862300 Triticum aestivum HOM05M005936 ORTHO05M007295 9.9e-155 549.7 407 70.5
V3.Lp_chr6_0G19546 Lolium perenne HOM05M005936 ORTHO05M007295 1.3e-154 549.3 407 70.0
AET6Gv20949400 Aegilops tauschii HOM05M005936 ORTHO05M007295 1.6e-152 542.3 386 71.5
Sspon.04G0035140-1D Saccharum spontaneum HOM05M005936 ORTHO05M007295 2.1e-149 531.9 313 83.7
Zjn_sc00066.1.g00880.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M005936 ORTHO05M007295 4.3e-142 507.7 389 71.5
evm.TU.AsparagusV1_07.1921.V1.1 Asparagus officinalis HOM05M005936 ORTHO05M007295 4.5e-139 497.7 407 65.6
p5.00_sc00076_p0130 Elaeis guineensis HOM05M005936 ORTHO05M007295 8.4e-138 493.4 391 65.5
DDU002G0620 Dioscorea dumetorum HOM05M005936 ORTHO05M007295 4.2e-137 491.1 355 70.1
DDU597G0001 Dioscorea dumetorum HOM05M005936 ORTHO05M007295 4.2e-137 491.1 355 70.1
Asa3G02047 Allium sativum HOM05M005936 ORTHO05M007295 5.5e-137 490.7 355 70.1
p5.00_sc00017_p0255 Elaeis guineensis HOM05M005936 ORTHO05M007295 1.6e-136 489.2 370 66.5
Ma04_g04490 Musa acuminata HOM05M005936 ORTHO05M007295 4.6e-136 487.6 363 67.8
Spipo16G0043800 Spirodela polyrhiza HOM05M005936 ORTHO05M007295 7.9e-136 486.9 383 65.3
ATR0787G052 Amborella trichopoda HOM05M005936 ORTHO05M007295 1.6e-133 479.2 400 63.0
MBI07_g22384_MAGBIO Magnolia biondii HOM05M005936 ORTHO05M007295 1.6e-133 479.2 355 68.7
Aco010175 Ananas comosus HOM05M005936 ORTHO05M007295 6.2e-133 477.2 392 63.5
Potri.002G255900 Populus trichocarpa HOM05M005936 ORTHO05M007295 9.0e-132 473.4 364 65.4
HPP92_020769 Vanilla planifolia HOM05M005936 ORTHO05M007295 5.8e-131 470.7 370 65.1
Potri.014G193300 Populus trichocarpa HOM05M005936 ORTHO05M007295 1.3e-130 469.5 391 61.4
CDE09G1390 Ceratophyllum demersum HOM05M005936 ORTHO05M007295 1.7e-130 469.2 368 65.2
CALSI_Maker00012820 Calamus simplicifolius HOM05M005936 ORTHO05M007295 6.5e-130 467.2 407 60.9
Zosma05g27365 Zostera marina HOM05M005936 ORTHO05M007295 5.5e-129 464.2 361 63.7
Glyma.13G127400 Glycine max HOM05M005936 ORTHO05M007295 9.3e-129 463.4 364 64.3
AT2G20360 Arabidopsis thaliana HOM05M005936 ORTHO05M007295 1.0e-127 459.9 394 60.4
Solyc09g064450.3 Solanum lycopersicum HOM05M005936 ORTHO05M007295 5.7e-126 454.1 396 60.1
SEGI_11456 Sequoiadendron giganteum HOM05M005936 ORTHO05M007295 2.1e-120 435.6 353 61.5
Dexi1B01G0030370 Digitaria exilis HOM05M005936 ORTHO05M007295 2.5e-118 428.7 396 60.6
Dexi1A01G0031410 Digitaria exilis HOM05M005936 ORTHO05M007295 1.1e-116 423.3 396 60.1
Zm00001eb258880 Zea mays B73 HOM05M005936 ORTHO05M007295 1.7e-114 416.0 300 74.3
CDE02G1088 Ceratophyllum demersum HOM05M005936 ORTHO05M007295 1.1e-105 386.7 318 63.8
AagrBONN_evm.TU.Sc2ySwM_368.182 Anthoceros agrestis HOM05M005936 ORTHO05M007295 2.4e-92 342.4 331 52.6
Mapoly0051s0097 Marchantia polymorpha HOM05M005936 ORTHO05M007295 2.7e-88 328.9 335 49.9
CALSI_Maker00016798 Calamus simplicifolius HOM05M005936 ORTHO05M007295 4.0e-87 325.1 226 70.8
Pp3c14_9070 Physcomitrium patens HOM05M005936 ORTHO05M007295 8.3e-85 317.4 339 48.1
CBR_g12802 Chara braunii HOM05M005936 ORTHO05M007295 1.1e-84 317.0 353 45.0
CALSI_Maker00013317 Calamus simplicifolius HOM05M005936 ORTHO05M007295 3.5e-83 312.0 333 52.0
SMO119G0351 Selaginella moellendorffii HOM05M005936 ORTHO05M007295 4.7e-80 301.6 310 50.3
Pp3c1_35920 Physcomitrium patens HOM05M005936 ORTHO05M007295 5.8e-70 268.1 287 47.4
MCO13G055 Micromonas commoda HOM05M005936 ORTHO05M007295 6.2e-64 248.1 338 42.6
PRCOL_00005891 Prasinoderma coloniale HOM05M005936 ORTHO05M007295 6.4e-53 211.5 349 35.0
Cre10.g434450 Chlamydomonas reinhardtii HOM05M005936 ORTHO05M007295 9.6e-41 171.0 346 33.8
OsKitaake02g370766 Oryza sativa Kitaake HOM05M002757 ORTHO05M003025 1.2e-38 164.1 139 65.5
OsR498G0204950400.01 Oryza sativa ssp. indica HOM05M005936 ORTHO05M007295 5.4e-36 155.2 134 64.2
OsR498G0204954200.01 Oryza sativa ssp. indica HOM05M002757 ORTHO05M003025 5.4e-36 155.2 134 64.2
OsKitaake02g370548 Oryza sativa Kitaake HOM05M002757 ORTHO05M003025 3.9e-34 149.1 164 54.9
SEGI_20632 Sequoiadendron giganteum HOM05M005936 ORTHO05M007295 1.8e-31 140.2 127 59.8
CDE02G0223 Ceratophyllum demersum HOM05M005936 ORTHO05M007295 9.9e-22 107.8 80 66.2
Asa0G04094 Allium sativum HOM05M004996 ORTHO05M005889 3.4e-06 56.2 84 41.7


User provided reference genes

Program Settings