Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zjn_sc00002.1.g06600.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M003806 ORTHO05M005213 1.6e-74 282.0 145 100.0
Dexi9A01G0040050 Digitaria exilis HOM05M003806 ORTHO05M005213 2.5e-64 248.1 145 89.7
Zjn_sc00003.1.g05270.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M003806 ORTHO05M005213 5.2e-62 240.4 162 81.5
GWHGAORA027072 Cenchrus purpureus HOM05M003806 ORTHO05M005213 3.8e-60 234.2 162 79.6
Pahal.9G517200 Panicum hallii HOM05M003806 ORTHO05M005213 9.3e-59 229.6 161 78.9
Os03g0270200 Oryza sativa ssp. japonica HOM05M003806 ORTHO05M005213 1.1e-56 222.6 162 74.7
Sobic.001G423700 Sorghum bicolor HOM05M003806 ORTHO05M005213 1.1e-56 222.6 163 76.1
Zm00001eb012100 Zea mays B73 HOM05M003806 ORTHO05M005213 3.3e-56 221.1 162 75.9
Zm00007a00002016 Zea mays B104 HOM05M003806 ORTHO05M005213 3.3e-56 221.1 162 75.9
GWHGAZTO023298 Oryza alta HOM05M003806 ORTHO05M005213 5.6e-56 220.3 162 74.7
GWHGAORA055423 Cenchrus purpureus HOM05M003806 ORTHO05M005213 1.6e-55 218.8 156 77.6
PH02Gene03519 Phyllostachys edulis HOM05M003806 ORTHO05M005213 3.6e-55 217.6 161 73.9
Misin02G414400 Miscanthus sinensis HOM05M003806 ORTHO05M005213 4.8e-55 217.2 163 74.8
Ot_Chr4_g00832 Oropetium thomaeum HOM05M003806 ORTHO05M005213 1.4e-54 215.7 162 75.3
OB03G22180 Oryza brachyantha HOM05M003806 ORTHO05M005213 1.8e-54 215.3 162 73.5
V3.Lp_chr4_0G18898 Lolium perenne HOM05M003806 ORTHO05M005213 4.0e-54 214.2 162 72.8
Horvu_MOREX_4H01G331600 Hordeum vulgare HOM05M003806 ORTHO05M005213 6.9e-54 213.4 162 72.2
TRITD4Av1G042900 Triticum turgidum HOM05M003806 ORTHO05M005213 6.9e-54 213.4 162 72.2
Sspon.01G0007790-1A Saccharum spontaneum HOM05M003806 ORTHO05M005213 9.0e-54 213.0 163 73.6
Sspon.01G0007790-1P Saccharum spontaneum HOM05M003806 ORTHO05M005213 9.0e-54 213.0 163 73.6
PH02Gene00202 Phyllostachys edulis HOM05M003806 ORTHO05M005213 1.2e-53 212.6 161 73.3
GWHGASIY038525 Secale cereale HOM05M003806 ORTHO05M005213 1.5e-53 212.2 162 71.6
AET4Gv20535700 Aegilops tauschii HOM05M003806 ORTHO05M005213 2.6e-53 211.5 162 71.6
TraesCS4A03G0195300 Triticum aestivum HOM05M003806 ORTHO05M005213 2.6e-53 211.5 162 71.6
TraesCS4D03G0514600 Triticum aestivum HOM05M003806 ORTHO05M005213 2.6e-53 211.5 162 71.6
TRIDC4AG012940 Triticum dicoccoides HOM05M003806 ORTHO05M005213 2.6e-53 211.5 162 71.6
TraesCS4B03G0579700 Triticum aestivum HOM05M003806 ORTHO05M005213 5.8e-53 210.3 162 71.6
TRIDC4BG037430 Triticum dicoccoides HOM05M003806 ORTHO05M005213 5.8e-53 210.3 162 71.6
TRITD4Bv1G128240 Triticum turgidum HOM05M003806 ORTHO05M005213 5.8e-53 210.3 162 71.6
Misin01G401500 Miscanthus sinensis HOM05M003806 ORTHO05M005213 7.6e-53 209.9 139 81.3
Seita.9G460800 Setaria italica HOM05M003806 ORTHO05M005213 2.2e-52 208.4 139 80.6
Sevir.9G464100 Setaria viridis HOM05M003806 ORTHO05M005213 2.2e-52 208.4 139 80.6
GWHGAZTO001728 Oryza alta HOM05M003806 ORTHO05M005213 1.1e-51 206.1 139 79.9
OsKitaake03g125100 Oryza sativa Kitaake HOM05M003806 ORTHO05M005213 1.1e-51 206.1 139 79.9
OsR498G0305651800.01 Oryza sativa ssp. indica HOM05M003806 ORTHO05M005213 1.1e-51 206.1 139 79.9
Sspon.01G0007790-2P Saccharum spontaneum HOM05M003806 ORTHO05M005213 1.4e-51 205.7 139 79.9
Solyc09g030390.3 Solanum lycopersicum HOM05M003806 ORTHO05M005213 2.7e-50 201.4 161 69.6
Aco001427 Ananas comosus HOM05M003806 ORTHO05M005213 3.9e-49 197.6 176 64.2
p5.00_sc00069_p0021 Elaeis guineensis HOM05M003806 ORTHO05M005213 3.9e-49 197.6 161 67.1
CDE07G0344 Ceratophyllum demersum HOM05M003806 ORTHO05M005213 1.1e-48 196.1 152 70.4
ATR0559G187 Amborella trichopoda HOM05M003806 ORTHO05M005213 2.5e-48 194.9 161 67.7
Spipo6G0073400 Spirodela polyrhiza HOM05M003806 ORTHO05M005213 3.3e-48 194.5 183 61.7
Bradi1g66870 Brachypodium distachyon HOM05M003806 ORTHO05M005213 1.3e-47 192.6 138 76.8
Potri.001G244600 Populus trichocarpa HOM05M003806 ORTHO05M005213 1.3e-47 192.6 158 69.6
Glyma.12G059700 Glycine max HOM05M003806 ORTHO05M005213 1.6e-47 192.2 161 65.8
Potri.009G036900 Populus trichocarpa HOM05M003806 ORTHO05M005213 1.6e-47 192.2 162 67.9
Zosma01g41220 Zostera marina HOM05M003806 ORTHO05M005213 1.6e-47 192.2 161 65.8
SEGI_12829 Sequoiadendron giganteum HOM05M003806 ORTHO05M005213 1.4e-46 189.1 146 71.2
p5.00_sc00099_p0017 Elaeis guineensis HOM05M003806 ORTHO05M005213 2.4e-46 188.3 149 69.8
Glyma.11G136000 Glycine max HOM05M003806 ORTHO05M005213 9.0e-46 186.4 161 64.6
Pp3c3_30240 Physcomitrium patens HOM05M003806 ORTHO05M005213 2.6e-45 184.9 149 67.1
Pp3c3_30241 Physcomitrium patens HOM05M003806 ORTHO05M005213 2.6e-45 184.9 149 67.1
HPP92_012608 Vanilla planifolia HOM05M003806 ORTHO05M005213 3.4e-45 184.5 140 68.6
MBI14_g11598_MAGBIO Magnolia biondii HOM05M003806 ORTHO05M005213 4.5e-45 184.1 142 67.6
Ma10_g05630 Musa acuminata HOM05M003806 ORTHO05M005213 4.5e-45 184.1 154 66.2
Ma09_g03820 Musa acuminata HOM05M003806 ORTHO05M005213 7.6e-45 183.3 161 64.0
AagrBONN_evm.TU.Sc2ySwM_117.3439 Anthoceros agrestis HOM05M003806 ORTHO05M005213 6.4e-44 180.3 139 70.5
Pp3c10_18390 Physcomitrium patens HOM05M003806 ORTHO05M005213 6.4e-44 180.3 149 65.8
Mapoly0063s0002 Marchantia polymorpha HOM05M003806 ORTHO05M005213 8.4e-44 179.9 117 78.6
AT2G29210 Arabidopsis thaliana HOM05M003806 ORTHO05M005213 1.1e-43 179.5 136 72.1
CALSI_Maker00003343 Calamus simplicifolius HOM05M003806 ORTHO05M005213 5.5e-43 177.2 149 65.8
CDE06G0141 Ceratophyllum demersum HOM05M003806 ORTHO05M005213 7.1e-43 176.8 113 80.5
CALSI_Maker00026073 Calamus simplicifolius HOM05M003806 ORTHO05M005213 1.2e-42 176.0 150 68.0
SMO144G0189 Selaginella moellendorffii HOM05M003806 ORTHO05M005213 6.0e-42 173.7 136 69.9
Asa6G04589 Allium sativum HOM05M003806 ORTHO05M005213 1.0e-41 172.9 154 62.3
CBR_g50691 Chara braunii HOM05M003806 ORTHO05M005213 3.9e-41 171.0 169 56.8
Dexi9B01G0039160 Digitaria exilis HOM05M003806 ORTHO05M005213 7.6e-37 156.8 145 64.1
PH02Gene41932 Phyllostachys edulis HOM05M003806 ORTHO05M005213 2.2e-28 128.6 78 84.6
evm.TU.AsparagusV1_03.241.V1.1 Asparagus officinalis HOM05M003806 ORTHO05M005213 2.9e-28 128.3 113 61.1
evm.TU.AsparagusV1_07.2770.V1.1 Asparagus officinalis HOM05M003806 ORTHO05M005213 1.5e-24 115.9 93 65.6
Cre16.g678050 Chlamydomonas reinhardtii HOM05M003806 ORTHO05M005213 8.2e-23 110.2 118 55.1
evm.TU.AsparagusV1_05.2245.V1.1 Asparagus officinalis HOM05M003806 ORTHO05M005213 2.0e-21 105.5 101 58.4
Zm00007a00015236 Zea mays B104 HOM05M003806 ORTHO05M005213 7.7e-21 103.6 159 45.9
MCO11G283 Micromonas commoda HOM05M003806 ORTHO05M005213 8.5e-20 100.1 137 46.7
Zm00007a00026715 Zea mays B104 HOM05M002160 ORTHO05M002183 9.4e-19 96.7 84 66.7
Zm00001eb397830 Zea mays B73 HOM05M003806 ORTHO05M005213 2.1e-18 95.5 82 65.9
Zm00007a00014298 Zea mays B104 HOM05M003806 ORTHO05M005213 1.5e-16 89.4 81 63.0
Zm00001eb284680 Zea mays B73 HOM05M003806 ORTHO05M005213 8.2e-15 83.6 78 62.8
Zm00007a00010379 Zea mays B104 HOM05M002160 ORTHO05M002183 2.4e-14 82.0 73 65.8
evm.TU.AsparagusV1_05.305.V1.1 Asparagus officinalis HOM05M000372 ORTHO05M002894 1.2e-13 79.7 83 54.2
Zm00001eb222410 Zea mays B73 HOM05M003806 ORTHO05M012997 1.0e-12 76.6 40 92.5
Zm00007a00037067 Zea mays B104 HOM05M003806 ORTHO05M012997 1.7e-12 75.9 78 53.8
Zjn_sc00038.1.g00470.1.sm.mk Zoysia japonica ssp. nagirizaki HOM05M003806 ORTHO05M005213 1.7e-12 75.9 88 53.4
Zm00007a00041128 Zea mays B104 HOM05M000606 ORTHO05M012997 2.9e-12 75.1 40 90.0
PH02Gene26601 Phyllostachys edulis HOM05M003806 ORTHO05M005213 8.5e-12 73.6 62 66.1
Zm00007a00010186 Zea mays B104 HOM05M003806 ORTHO05M012997 8.5e-12 73.6 61 67.2
Zm00007a00039845 Zea mays B104 HOM05M003806 ORTHO05M012997 8.5e-12 73.6 61 67.2
PH02Gene30934 Phyllostachys edulis HOM05M003806 ORTHO05M005213 3.2e-11 71.6 76 56.6
PRCOL_00003490 Prasinoderma coloniale HOM05M003806 ORTHO05M005213 1.5e-08 62.8 111 31.5
PH02Gene43955 Phyllostachys edulis HOM05M003806 ORTHO05M016149 2.6e-08 62.0 38 78.9
PH02Gene49630 Phyllostachys edulis HOM05M003806 ORTHO05M005213 5.7e-08 60.8 56 64.3
PH02Gene33208 Phyllostachys edulis HOM05M003806 ORTHO05M016149 1.7e-07 59.3 37 81.1
Zm00007a00042676 Zea mays B104 HOM05M003806 ORTHO05M018552 1.7e-07 59.3 54 59.3
Zm00007a00028977 Zea mays B104 HOM05M003806 ORTHO05M273523 1.4e-06 56.2 54 57.4


User provided reference genes

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