Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zjn_sc00002.1.g06520.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM05M008369 ORTHO05M010700 9.1e-165 582.8 307 100.0
EJB05_07196 Eragrostis curvula HOM05M008369 ORTHO05M010700 5.3e-96 354.4 236 79.2
Pahal.9G515700 Panicum hallii HOM05M008369 ORTHO05M010700 1.4e-88 329.7 282 66.3
Seita.9G462000 Setaria italica HOM05M008369 ORTHO05M010700 1.7e-86 322.8 249 71.1
Sevir.9G465300 Setaria viridis HOM05M008369 ORTHO05M010700 2.2e-86 322.4 249 70.7
PH02Gene00189 Phyllostachys edulis HOM05M008369 ORTHO05M010700 9.3e-85 317.0 250 69.2
GWHGAORA055434 Cenchrus purpureus HOM05M008369 ORTHO05M010700 6.1e-84 314.3 250 70.0
Zm00001eb012210 Zea mays B73 HOM05M008369 ORTHO05M010700 1.3e-83 313.2 250 68.0
Misin02G411400 Miscanthus sinensis HOM05M008369 ORTHO05M010700 8.7e-83 310.5 250 68.4
Misin01G402800 Miscanthus sinensis HOM05M008369 ORTHO05M010700 3.4e-79 298.5 244 66.8
Ot_Chr4_g00845 Oropetium thomaeum HOM05M008369 ORTHO05M010700 1.7e-78 296.2 234 70.9
Zm00007a00002033 Zea mays B104 HOM05M008369 ORTHO05M010700 6.5e-78 294.3 234 67.9
Dexi9B01G0039050 Digitaria exilis HOM05M008369 ORTHO05M010700 3.2e-77 292.0 231 67.5
Sobic.001G422600 Sorghum bicolor HOM05M008369 ORTHO05M010700 4.6e-76 288.1 231 67.1
Bradi1g66750 Brachypodium distachyon HOM05M008369 ORTHO05M010700 3.8e-70 268.5 244 62.7
V3.Lp_chr4_0G18978 Lolium perenne HOM05M008369 ORTHO05M010700 1.9e-69 266.2 249 62.2
Sspon.01G0051710-1P Saccharum spontaneum HOM05M008369 ORTHO05M010700 2.1e-68 262.7 229 64.6
Sspon.01G0051710-2P Saccharum spontaneum HOM05M008369 ORTHO05M010700 4.7e-68 261.5 229 64.2
Sspon.01G0006350-3D Saccharum spontaneum HOM05M008369 ORTHO05M010700 5.7e-66 254.6 210 66.2
OsKitaake03g126500 Oryza sativa Kitaake HOM05M008369 ORTHO05M010700 1.8e-64 249.6 281 55.2
OsR498G0305659300.01 Oryza sativa ssp. indica HOM05M008369 ORTHO05M010700 1.8e-64 249.6 281 55.2
Os03g0272400 Oryza sativa ssp. japonica HOM05M008369 ORTHO05M010700 1.8e-64 249.6 281 55.2
GWHGAZTO001744 Oryza alta HOM05M008369 ORTHO05M010700 4.1e-64 248.4 250 58.8
TraesCS4D03G0512700 Triticum aestivum HOM05M008369 ORTHO05M010700 1.5e-63 246.5 278 54.7
OB03G22290 Oryza brachyantha HOM05M008369 ORTHO05M010700 2.6e-63 245.7 301 53.5
AET4Gv20534000 Aegilops tauschii HOM05M008369 ORTHO05M010700 2.2e-62 242.7 280 54.6
TraesCS4B03G0577800 Triticum aestivum HOM05M008369 ORTHO05M010700 3.8e-62 241.9 246 59.3
TRITD4Bv1G127680 Triticum turgidum HOM05M008369 ORTHO05M010700 3.8e-62 241.9 246 59.3
TRITD4Av1G043380 Triticum turgidum HOM05M008369 ORTHO05M010700 3.0e-59 232.3 281 53.4
Dexi9A01G0039970 Digitaria exilis HOM05M008369 ORTHO05M010700 4.0e-59 231.9 229 56.8
Horvu_MOREX_4H01G330200 Hordeum vulgare HOM05M008369 ORTHO05M010700 8.8e-59 230.7 242 56.2
TRIDC4AG013120 Triticum dicoccoides HOM05M008369 ORTHO05M010700 1.1e-56 223.8 308 49.0
TraesCS4A03G0197900 Triticum aestivum HOM05M008369 ORTHO05M010700 7.0e-56 221.1 275 52.0
Zjn_sc00003.1.g05160.1.sm.mk Zoysia japonica ssp. nagirizaki HOM05M008369 ORTHO05M010700 5.0e-54 214.9 252 57.5
TRIDC4BG037270 Triticum dicoccoides HOM05M008369 ORTHO05M010700 6.5e-54 214.5 223 56.5
GWHGAZTO023311 Oryza alta HOM05M008369 ORTHO05M010700 8.8e-51 204.1 213 56.8
GWHGASIY038538 Secale cereale HOM05M008369 ORTHO05M010700 9.4e-45 184.1 199 57.3
AET1Gv20944200 Aegilops tauschii HOM05M008369 ORTHO05M010700 1.1e-29 134.0 143 52.4
Zjn_sc05373.1.g00010.1.am.mk Zoysia japonica ssp. nagirizaki HOM05M008369 ORTHO05M010700 3.3e-29 132.5 80 97.5
Sspon.01G0051710-1C Saccharum spontaneum HOM05M008369 ORTHO05M010700 1.2e-12 77.4 59 66.1
Aco001437 Ananas comosus HOM05M012318 ORTHO05M012366 4.1e-08 62.4 256 27.7
CALSI_Maker00011138 Calamus simplicifolius HOM05M012318 ORTHO05M012366 1.7e-06 57.0 238 29.0


User provided reference genes

Program Settings