Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zjn_sc00001.1.g09940.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M007459 ORTHO05M009077 4.9e-76 287.0 144 100.0
Seita.2G315400 Setaria italica HOM05M007459 ORTHO05M009077 2.2e-20 102.1 52 98.1
Sevir.2G326500 Setaria viridis HOM05M007459 ORTHO05M009077 2.2e-20 102.1 52 98.1
Misin04G286600 Miscanthus sinensis HOM05M007459 ORTHO05M009077 4.9e-20 100.9 52 96.2
GWHGAZTO091404 Oryza alta HOM05M007459 ORTHO05M009077 4.9e-20 100.9 52 96.2
OsKitaake07g142200 Oryza sativa Kitaake HOM05M007459 ORTHO05M009077 4.9e-20 100.9 52 96.2
OsR498G0714311900.01 Oryza sativa ssp. indica HOM05M007459 ORTHO05M009077 4.9e-20 100.9 52 96.2
Os07g0483400 Oryza sativa ssp. japonica HOM05M007459 ORTHO05M009077 4.9e-20 100.9 52 96.2
Sspon.02G0007480-2B Saccharum spontaneum HOM05M007459 ORTHO05M009077 4.9e-20 100.9 52 96.2
Sobic.002G303200 Sorghum bicolor HOM05M007459 ORTHO05M009077 4.9e-20 100.9 52 96.2
Zm00001eb104990 Zea mays B73 HOM05M007459 ORTHO05M009077 4.9e-20 100.9 52 96.2
GWHGAORA007119 Cenchrus purpureus HOM05M007459 ORTHO05M009077 6.4e-20 100.5 52 96.2
OB07G20440 Oryza brachyantha HOM05M007459 ORTHO05M009077 1.1e-19 99.8 52 94.2
Pahal.2G373600 Panicum hallii HOM05M007459 ORTHO05M009077 1.4e-19 99.4 52 94.2
PH02Gene06922 Phyllostachys edulis HOM05M007459 ORTHO05M009077 1.4e-19 99.4 52 94.2
Zjn_sc00060.1.g01780.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M007459 ORTHO05M009077 1.4e-19 99.4 52 94.2
Ot_Chr4_g01021 Oropetium thomaeum HOM05M007459 ORTHO05M009077 5.5e-19 97.4 51 96.1
GWHGAZTO043834 Oryza alta HOM05M007459 ORTHO05M009077 9.3e-19 96.7 52 92.3
EJB05_12581 Eragrostis curvula HOM05M007459 ORTHO05M009077 1.2e-18 96.3 52 90.4
V3.Lp_chr2_0G8658 Lolium perenne HOM05M007459 ORTHO05M009077 1.2e-18 96.3 52 90.4
Misin03G266800 Miscanthus sinensis HOM05M007459 ORTHO05M009077 1.2e-18 96.3 52 92.3
Bradi1g27745 Brachypodium distachyon HOM05M007459 ORTHO05M009077 3.5e-18 94.7 52 88.5
Horvu_MOREX_4H01G468000 Hordeum vulgare HOM05M007459 ORTHO05M009077 6.0e-18 94.0 52 86.5
TraesCS2A03G0552600 Triticum aestivum HOM05M007459 ORTHO05M009077 6.0e-18 94.0 52 86.5
TraesCS2B03G0660200 Triticum aestivum HOM05M007459 ORTHO05M009077 6.0e-18 94.0 52 86.5
TraesCS2D03G0501600 Triticum aestivum HOM05M007459 ORTHO05M009077 6.0e-18 94.0 52 86.5
TRIDC2AG032080 Triticum dicoccoides HOM05M007459 ORTHO05M009077 6.0e-18 94.0 52 86.5
TRITD2Bv1G113660 Triticum turgidum HOM05M007459 ORTHO05M009077 6.0e-18 94.0 52 86.5
TRIDC2BG036630 Triticum dicoccoides HOM05M007459 ORTHO05M009077 1.3e-17 92.8 50 90.0
CALSI_Maker00042605 Calamus simplicifolius HOM05M007459 ORTHO05M009077 7.4e-16 87.0 53 73.6
Ma11_g03730 Musa acuminata HOM05M007459 ORTHO05M009077 7.4e-16 87.0 53 77.4
GWHGASIY008096 Secale cereale HOM05M007459 ORTHO05M009077 7.4e-16 87.0 52 80.8
GWHGASIY031942 Secale cereale HOM05M007459 ORTHO05M009077 7.4e-16 87.0 52 80.8
DDU148G0006 Dioscorea dumetorum HOM05M002173 ORTHO05M005174 3.7e-15 84.7 66 62.1
DDU914G0123 Dioscorea dumetorum HOM05M002173 ORTHO05M005174 3.7e-15 84.7 66 62.1
Spipo16G0037200 Spirodela polyrhiza HOM05M007459 ORTHO05M009077 5.3e-14 80.9 52 69.2
evm.TU.AsparagusV1_01.852.V1.1 Asparagus officinalis HOM05M007459 ORTHO05M009077 9.0e-14 80.1 53 66.0
Zosma01g24190 Zostera marina HOM05M007459 ORTHO05M009077 9.0e-14 80.1 53 66.0
ATR0680G335 Amborella trichopoda HOM05M007459 ORTHO05M009077 1.2e-13 79.7 72 54.2
MBI18_g42863_MAGBIO Magnolia biondii HOM05M007459 ORTHO05M009077 2.6e-13 78.6 53 64.2
CDE11G0686 Ceratophyllum demersum HOM05M002998 ORTHO05M009077 5.8e-13 77.4 53 67.9
Solyc08g081130.4 Solanum lycopersicum HOM05M007459 ORTHO05M009077 1.3e-12 76.3 52 63.5
Zm00007a00013498 Zea mays B104 HOM05M007459 ORTHO05M009077 1.3e-12 76.3 38 97.4
Potri.001G103800 Populus trichocarpa HOM05M007459 ORTHO05M009077 2.9e-12 75.1 52 59.6
EJB05_53503 Eragrostis curvula HOM05M007459 ORTHO05M009077 3.8e-12 74.7 39 92.3
AET2Gv20527000 Aegilops tauschii HOM05M007459 ORTHO05M009077 1.9e-11 72.4 39 87.2
AT4G23330 Arabidopsis thaliana HOM05M007459 ORTHO05M009077 2.5e-11 72.0 52 57.7
Asa8G04660 Allium sativum HOM05M007459 ORTHO05M009077 4.2e-11 71.2 53 58.5
Glyma.05G208200 Glycine max HOM05M007459 ORTHO05M009077 7.1e-11 70.5 50 62.0
Aco012027 Ananas comosus HOM05M007459 ORTHO05M009077 1.6e-10 69.3 40 80.0
SEGI_09083 Sequoiadendron giganteum HOM05M007459 ORTHO05M009077 3.5e-10 68.2 71 49.3
AagrBONN_evm.TU.Sc2ySwM_369.479 Anthoceros agrestis HOM05M007459 ORTHO05M009077 7.9e-10 67.0 51 52.9
HPP92_001497 Vanilla planifolia HOM05M007459 ORTHO05M009077 3.9e-09 64.7 54 59.3
Mapoly0008s0209 Marchantia polymorpha HOM05M007459 ORTHO05M009077 4.3e-08 61.2 52 46.2
TRITD2Av1G118230 Triticum turgidum HOM05M007459 ORTHO05M009077 1.6e-07 59.3 50 64.0
Pp3c11_2200 Physcomitrium patens HOM05M007459 ORTHO05M009077 1.1e-06 56.6 52 42.3
CDE09G0994 Ceratophyllum demersum HOM05M007459 ORTHO05M009077 5.3e-06 54.3 40 60.0


User provided reference genes

Program Settings