Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
V3.Lp_scaffold_7385G4 Lolium perenne HOM05M003954 ORTHO05M005585 8.0e-146 519.6 259 100.0
TraesCS5B03G0423300 Triticum aestivum HOM05M003954 ORTHO05M005585 5.4e-110 400.6 262 80.5
Horvu_MOREX_5H01G268400 Hordeum vulgare HOM05M003954 ORTHO05M005585 7.1e-110 400.2 262 80.2
TRITD5Bv1G096060 Triticum turgidum HOM05M003954 ORTHO05M005585 7.1e-110 400.2 251 81.7
TraesCS5D03G0396400 Triticum aestivum HOM05M003954 ORTHO05M005585 2.1e-109 398.7 262 80.5
TRIDC5BG027150 Triticum dicoccoides HOM05M003954 ORTHO05M005585 2.1e-109 398.7 245 81.6
TraesCS5A03G0427700 Triticum aestivum HOM05M003954 ORTHO05M005585 6.0e-109 397.1 262 79.4
TRITD5Av1G116890 Triticum turgidum HOM05M003954 ORTHO05M005585 1.3e-108 396.0 250 80.4
Sobic.007G077532 Sorghum bicolor HOM05M003954 ORTHO05M005585 6.7e-84 313.9 250 66.0
Pahal.6G272100 Panicum hallii HOM05M003954 ORTHO05M005585 1.3e-82 309.7 260 63.1
Sspon.06G0009090-1A Saccharum spontaneum HOM05M003954 ORTHO05M005585 2.8e-82 308.5 251 64.1
Dexi6A01G0019020 Digitaria exilis HOM05M003954 ORTHO05M005585 3.7e-82 308.1 246 65.0
Zm00001eb413910 Zea mays B73 HOM05M003954 ORTHO05M005585 8.2e-82 307.0 249 65.1
Zm00007a00048096 Zea mays B104 HOM05M003954 ORTHO05M005585 8.2e-82 307.0 249 65.1
EJB05_09601 Eragrostis curvula HOM05M003954 ORTHO05M005585 1.4e-81 306.2 252 63.5
Misin07G139400 Miscanthus sinensis HOM05M003954 ORTHO05M005585 3.1e-81 305.1 252 64.7
Sspon.06G0009090-2D Saccharum spontaneum HOM05M003954 ORTHO05M005585 3.1e-81 305.1 251 62.9
OsR498G1220788600.01 Oryza sativa ssp. indica HOM05M003954 ORTHO05M005585 4.0e-81 304.7 234 68.4
Ot_Chr9_g14047 Oropetium thomaeum HOM05M003954 ORTHO05M005585 9.0e-81 303.5 239 67.4
OsKitaake12g001700 Oryza sativa Kitaake HOM05M003954 ORTHO05M005585 2.0e-80 302.4 233 67.8
OsR498G1119278000.01 Oryza sativa ssp. indica HOM05M003954 ORTHO05M005585 2.0e-80 302.4 233 67.8
Os11g0102700 Oryza sativa ssp. japonica HOM05M003954 ORTHO05M005585 2.0e-80 302.4 233 67.8
Os12g0102350 Oryza sativa ssp. japonica HOM05M003954 ORTHO05M005585 2.0e-80 302.4 233 67.8
Misin13G053200 Miscanthus sinensis HOM05M003954 ORTHO05M005585 5.8e-80 300.8 249 63.9
GWHGAORA037017 Cenchrus purpureus HOM05M003954 ORTHO05M005585 1.0e-79 300.1 240 66.2
Bradi4g45245 Brachypodium distachyon HOM05M003954 ORTHO05M005585 1.7e-79 299.3 250 69.6
Zjn_sc00112.1.g00470.1.sm.mk Zoysia japonica ssp. nagirizaki HOM05M003954 ORTHO05M005585 2.2e-79 298.9 249 66.7
GWHGAORA012061 Cenchrus purpureus HOM05M003954 ORTHO05M005585 6.5e-79 297.4 240 66.7
Sevir.6G225400 Setaria viridis HOM05M003954 ORTHO05M005585 1.9e-78 295.8 256 62.9
GWHGAORA037045 Cenchrus purpureus HOM05M003954 ORTHO05M005585 5.7e-75 284.3 239 63.2
OB0102G10020 Oryza brachyantha HOM05M003954 ORTHO05M005585 1.1e-73 280.0 220 67.7
Dexi3A01G0012170 Digitaria exilis HOM05M003954 ORTHO05M005585 4.1e-65 251.5 247 56.7
Dexi3B01G0012240 Digitaria exilis HOM05M003954 ORTHO05M005585 2.0e-64 249.2 246 56.9
GWHGAZTO062302 Oryza alta HOM05M003954 ORTHO05M005585 1.7e-63 246.1 248 57.3
Misin13G053700 Miscanthus sinensis HOM05M003954 ORTHO05M005585 2.9e-63 245.4 189 68.3
Sspon.06G0029790-1C Saccharum spontaneum HOM05M003954 ORTHO05M005585 2.0e-56 222.6 248 51.6
Aco014245 Ananas comosus HOM05M003954 ORTHO05M005585 6.5e-55 217.6 248 46.8
Os12g0127600 Oryza sativa ssp. japonica HOM05M003954 ORTHO05M005585 9.1e-49 197.2 219 48.9
OsKitaake12g020500 Oryza sativa Kitaake HOM05M003954 ORTHO05M005585 2.6e-48 195.7 218 48.6
Ma09_g18980 Musa acuminata HOM05M003954 ORTHO05M005585 1.9e-46 189.5 241 45.6
Dexi8A01G0001660 Digitaria exilis HOM05M003954 ORTHO05M005585 1.2e-45 186.8 223 49.3
CALSI_Maker00038462 Calamus simplicifolius HOM05M003954 ORTHO05M005585 6.7e-44 181.0 238 43.3
Zosma01g00150 Zostera marina HOM05M003954 ORTHO05M005585 2.6e-43 179.1 232 43.1
DDU550G0695 Dioscorea dumetorum HOM05M003954 ORTHO05M005585 4.8e-42 174.9 226 40.3
Misin11G195300 Miscanthus sinensis HOM05M003954 ORTHO05M005585 2.4e-41 172.6 144 68.8
Glyma.12G072600 Glycine max HOM05M003954 ORTHO05M005585 1.0e-39 167.2 227 42.3
Sobic.003G354700 Sorghum bicolor HOM05M003954 ORTHO05M005585 1.7e-39 166.4 256 43.4
SEGI_39191 Sequoiadendron giganteum HOM05M003954 ORTHO05M005585 2.2e-39 166.0 227 41.9
ATR0069G023 Amborella trichopoda HOM05M003954 ORTHO05M005585 2.9e-39 165.6 229 41.9
Potri.013G002700 Populus trichocarpa HOM05M003954 ORTHO05M005585 3.2e-38 162.2 245 41.2
AT5G60190 Arabidopsis thaliana HOM05M003954 ORTHO05M005585 5.5e-38 161.4 227 43.2
Spipo30G0001300 Spirodela polyrhiza HOM05M003954 ORTHO05M005585 5.2e-36 154.8 225 38.7
AagrBONN_evm.TU.Sc2ySwM_344.2535 Anthoceros agrestis HOM05M003954 ORTHO05M005585 4.4e-35 151.8 233 38.6
OsKitaake12g002700 Oryza sativa Kitaake HOM05M003954 ORTHO05M005585 7.5e-35 151.0 245 37.6
Os12g0103580 Oryza sativa ssp. japonica HOM05M003954 ORTHO05M005585 7.5e-35 151.0 245 37.6
Mapoly0009s0037 Marchantia polymorpha HOM05M003954 ORTHO05M005585 2.2e-34 149.4 236 35.2
EJB05_09159 Eragrostis curvula HOM05M003954 ORTHO05M005585 8.3e-34 147.5 113 68.1
Pahal.5G354401 Panicum hallii HOM05M003954 ORTHO05M005585 1.8e-33 146.4 162 53.1
EJB05_09162 Eragrostis curvula HOM05M003954 ORTHO05M005585 3.1e-33 145.6 135 57.0
AET7Gv20505500 Aegilops tauschii HOM05M003954 ORTHO05M005585 1.7e-31 139.8 253 37.5
TraesCS7D03G0447700 Triticum aestivum HOM05M003954 ORTHO05M005585 1.7e-31 139.8 253 37.5
Sevir.8G058600 Setaria viridis HOM05M003954 ORTHO05M005585 2.9e-31 139.0 212 38.2
OB12G10150 Oryza brachyantha HOM05M003954 ORTHO05M005585 3.8e-31 138.7 123 59.3
Pp3c21_14830 Physcomitrium patens HOM05M003954 ORTHO05M005585 5.0e-31 138.3 234 36.8
Ot_Chr2_gn32777 Oropetium thomaeum HOM05M003954 ORTHO05M005585 6.5e-31 137.9 174 44.8
Cre01.g055050 Chlamydomonas reinhardtii HOM05M003954 ORTHO05M005585 1.9e-30 136.3 214 41.6
Asa2G04634 Allium sativum HOM05M003954 ORTHO05M005585 5.5e-30 134.8 226 34.5
Asa2G04630 Allium sativum HOM05M003954 ORTHO05M005585 7.2e-30 134.4 224 34.8
Bradi4g25494 Brachypodium distachyon HOM05M003954 ORTHO05M005585 7.2e-30 134.4 176 47.2
Ot_Chr2_gn33440 Oropetium thomaeum HOM05M003954 ORTHO05M005585 1.5e-27 126.7 181 42.5
TRIDC4BG056820 Triticum dicoccoides HOM05M003954 ORTHO05M020520 1.5e-27 126.7 254 34.6
MCO07G761 Micromonas commoda HOM05M003954 ORTHO05M005585 5.7e-27 124.8 226 35.0
Sobic.008G165401 Sorghum bicolor HOM05M003954 ORTHO05M014236 4.9e-26 121.7 216 35.2
AET4Gv20792900 Aegilops tauschii HOM05M003954 ORTHO05M020520 1.1e-25 120.6 218 35.8
TraesCS5A03G1192100 Triticum aestivum HOM05M003954 ORTHO05M020520 1.1e-25 120.6 248 33.9
TRIDC5AG072310 Triticum dicoccoides HOM05M003954 ORTHO05M020520 1.1e-25 120.6 248 33.9
Solyc05g005310.3 Solanum lycopersicum HOM05M003954 ORTHO05M005585 3.1e-25 119.0 153 45.8
SMO367G1171 Selaginella moellendorffii HOM05M002422 ORTHO05M002930 7.0e-25 117.9 190 36.8
CBR_g4323 Chara braunii HOM05M003954 ORTHO05M005585 9.2e-25 117.5 190 38.4
GWHGAZTO049178 Oryza alta HOM05M010504 ORTHO05M020075 7.8e-24 114.4 209 35.4
Ot_Chr2_gn32776 Oropetium thomaeum HOM05M003954 ORTHO05M005585 1.0e-23 114.0 146 46.6
GWHGAZTO010057 Oryza alta HOM05M003954 ORTHO05M005585 3.8e-23 112.1 157 49.7
GWHGAORA030981 Cenchrus purpureus HOM05M003954 ORTHO05M005585 8.6e-23 110.9 230 33.5
GWHGAORA065328 Cenchrus purpureus HOM05M003954 ORTHO05M014236 1.5e-19 100.1 207 31.9
Seita.5G009800 Setaria italica HOM05M003954 ORTHO05M005585 1.3e-18 97.1 132 42.4
CDE04G2448 Ceratophyllum demersum HOM05M003954 ORTHO05M005585 2.2e-18 96.3 161 31.7
PRCOL_00006943 Prasinoderma coloniale HOM05M004253 ORTHO05M006886 2.2e-18 96.3 204 36.8
TRIDC3AG056850 Triticum dicoccoides HOM05M003954 ORTHO05M005585 3.7e-18 95.5 201 33.3
GWHGAZTO095802 Oryza alta HOM05M010504 ORTHO05M020075 1.4e-17 93.6 204 30.9
Sevir.5G009900 Setaria viridis HOM05M003954 ORTHO05M005585 1.4e-17 93.6 101 44.6
GWHGAZTO013583 Oryza alta HOM05M011667 ORTHO05M014089 1.2e-16 90.5 194 37.1
Pahal.8G017100 Panicum hallii HOM05M003954 ORTHO05M005585 1.2e-16 90.5 94 51.1
Dexi5B01G0037840 Digitaria exilis HOM05M003954 ORTHO05M005585 1.7e-15 86.7 75 52.0
EJB05_18588 Eragrostis curvula HOM05M003954 ORTHO05M013801 3.0e-15 85.9 187 33.7
OsKitaake12g001912 Oryza sativa Kitaake HOM05M003954 ORTHO05M005585 7.5e-11 71.2 48 72.9
GWHGAZTO065272 Oryza alta HOM05M003954 ORTHO05M005585 2.9e-10 69.3 52 69.2
Pahal.5G093100 Panicum hallii HOM05M003954 ORTHO05M005585 1.1e-09 67.4 102 36.3
OsKitaake01g442201 Oryza sativa Kitaake HOM05M003954 ORTHO05M188784 9.2e-09 64.3 52 69.2


User provided reference genes

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