Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
V3.Lp_scaffold_672G30 Lolium perenne HOM05M005115 ORTHO05M006582 0.0e+00 1578.5 834 100.0
Bradi1g03380 Brachypodium distachyon HOM05M005115 ORTHO05M006582 0.0e+00 1390.6 855 85.6
Horvu_MOREX_5H01G684400 Hordeum vulgare HOM05M005115 ORTHO05M006582 0.0e+00 1375.5 850 85.5
TraesCS5B03G1216000 Triticum aestivum HOM05M005115 ORTHO05M006582 0.0e+00 1371.7 850 85.2
TRITD5Bv1G234940 Triticum turgidum HOM05M005115 ORTHO05M006582 0.0e+00 1371.7 850 85.2
TraesCS5D03G1097300 Triticum aestivum HOM05M005115 ORTHO05M006582 0.0e+00 1364.0 849 84.8
PH02Gene06038 Phyllostachys edulis HOM05M005115 ORTHO05M006582 0.0e+00 1362.1 855 83.7
TRIDC5BG075000 Triticum dicoccoides HOM05M005115 ORTHO05M006582 0.0e+00 1360.1 834 85.5
TraesCS5A03G1143200 Triticum aestivum HOM05M005115 ORTHO05M006582 0.0e+00 1359.0 860 83.7
TRITD5Av1G235520 Triticum turgidum HOM05M005115 ORTHO05M006582 0.0e+00 1359.0 860 83.7
AET5Gv21121900 Aegilops tauschii HOM05M005115 ORTHO05M006582 0.0e+00 1357.4 847 84.7
GWHGASIY041233 Secale cereale HOM05M005115 ORTHO05M006582 0.0e+00 1355.9 849 84.5
OsR498G0307302500.01 Oryza sativa ssp. indica HOM05M005115 ORTHO05M006582 0.0e+00 1319.7 853 83.6
OsKitaake03g397700 Oryza sativa Kitaake HOM05M005115 ORTHO05M006582 0.0e+00 1317.8 853 83.5
Os03g0825700 Oryza sativa ssp. japonica HOM05M005115 ORTHO05M006582 0.0e+00 1317.8 853 83.5
Pahal.9G026600 Panicum hallii HOM05M005115 ORTHO05M006582 0.0e+00 1313.1 839 81.8
GWHGAZTO077287 Oryza alta HOM05M005115 ORTHO05M006582 0.0e+00 1300.4 853 83.2
Sevir.9G028000 Setaria viridis HOM05M005115 ORTHO05M006582 0.0e+00 1300.0 842 80.3
Seita.9G028600 Setaria italica HOM05M005115 ORTHO05M006582 0.0e+00 1299.3 842 80.3
GWHGAZTO027405 Oryza alta HOM05M005115 ORTHO05M006582 0.0e+00 1295.4 850 82.6
Zm00001eb063130 Zea mays B73 HOM05M005115 ORTHO05M006582 0.0e+00 1292.3 843 80.2
EJB05_03785 Eragrostis curvula HOM05M005115 ORTHO05M006582 0.0e+00 1280.0 873 77.5
EJB05_03768 Eragrostis curvula HOM05M005115 ORTHO05M006582 0.0e+00 1273.8 884 76.4
Misin01G022700 Miscanthus sinensis HOM05M005115 ORTHO05M006582 0.0e+00 1273.5 840 78.3
Ot_Chr4_g23672 Oropetium thomaeum HOM05M005115 ORTHO05M006582 0.0e+00 1271.1 824 80.8
Sspon.01G0031530-1A Saccharum spontaneum HOM05M005115 ORTHO05M006582 0.0e+00 1267.3 840 78.8
Sspon.01G0031530-2B Saccharum spontaneum HOM05M005115 ORTHO05M006582 0.0e+00 1267.3 840 78.8
GWHGAORA020347 Cenchrus purpureus HOM05M005115 ORTHO05M006582 0.0e+00 1266.5 801 80.9
Misin02G017700 Miscanthus sinensis HOM05M005115 ORTHO05M006582 0.0e+00 1264.2 840 78.7
GWHGAORA050310 Cenchrus purpureus HOM05M005115 ORTHO05M006582 0.0e+00 1231.1 845 77.3
Dexi9B01G0002510 Digitaria exilis HOM05M005115 ORTHO05M006582 0.0e+00 1214.1 812 77.3
Zm00007a00043364 Zea mays B104 HOM05M005115 ORTHO05M006582 0.0e+00 1210.3 793 79.1
Zjn_sc00013.1.g09000.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M005115 ORTHO05M006582 0.0e+00 1171.0 833 75.5
Ma10_g13940 Musa acuminata HOM05M005115 ORTHO05M006582 0.0e+00 1167.1 832 71.6
Aco000485 Ananas comosus HOM05M005115 ORTHO05M006582 0.0e+00 1161.7 828 74.4
p5.00_sc00020_p0223 Elaeis guineensis HOM05M005115 ORTHO05M006582 0.0e+00 1161.0 824 72.2
p5.00_sc00084_p0060 Elaeis guineensis HOM05M005115 ORTHO05M006582 0.0e+00 1149.4 851 69.8
evm.TU.AsparagusV1_07.43.V1.1 Asparagus officinalis HOM05M005115 ORTHO05M006582 0.0e+00 1133.2 868 68.1
TRIDC5AG069420 Triticum dicoccoides HOM05M005115 ORTHO05M006582 0.0e+00 1132.5 711 81.4
OB03G46470 Oryza brachyantha HOM05M005115 ORTHO05M006582 0.0e+00 1130.9 699 80.4
HPP92_018041 Vanilla planifolia HOM05M005115 ORTHO05M006582 0.0e+00 1130.5 860 68.1
Sobic.001G030000 Sorghum bicolor HOM05M005115 ORTHO05M006582 0.0e+00 1114.8 729 76.0
Potri.006G096100 Populus trichocarpa HOM05M005115 ORTHO05M006582 0.0e+00 1097.4 860 66.3
Zosma01g40940 Zostera marina HOM05M005115 ORTHO05M006582 0.0e+00 1096.6 824 68.9
Spipo23G0006500 Spirodela polyrhiza HOM05M005115 ORTHO05M006582 0.0e+00 1082.8 840 67.4
Potri.016G110800 Populus trichocarpa HOM05M005115 ORTHO05M006582 0.0e+00 1080.5 859 65.0
ATR0618G171 Amborella trichopoda HOM05M005115 ORTHO05M006582 0.0e+00 1078.9 794 69.5
CDE04G3748 Ceratophyllum demersum HOM05M005115 ORTHO05M006582 0.0e+00 1075.5 822 68.1
Asa6G03852 Allium sativum HOM05M005115 ORTHO05M006582 6.7e-312 1072.8 907 63.1
AT3G09090 Arabidopsis thaliana HOM05M005115 ORTHO05M006582 5.0e-306 1053.5 893 62.9
Glyma.01G111300 Glycine max HOM05M005115 ORTHO05M006582 1.7e-301 1038.5 870 63.6
Glyma.03G076900 Glycine max HOM05M005115 ORTHO05M006582 1.2e-299 1032.3 884 62.8
Solyc09g013130.3 Solanum lycopersicum HOM05M005115 ORTHO05M006582 1.3e-298 1028.9 866 62.8
DDU171G0073 Dioscorea dumetorum HOM05M005115 ORTHO05M006582 2.6e-294 1014.6 838 64.8
DDU602G0037 Dioscorea dumetorum HOM05M005115 ORTHO05M006582 3.3e-294 1014.2 837 64.8
Asa2G01511 Allium sativum HOM05M005115 ORTHO05M006582 6.1e-288 993.4 836 64.5
CDE03G0023 Ceratophyllum demersum HOM05M005115 ORTHO05M006582 2.4e-284 981.5 821 60.9
GWHGAORA050339 Cenchrus purpureus HOM05M005115 ORTHO05M006582 7.7e-275 949.9 859 61.8
Sspon.01G0031530-3D Saccharum spontaneum HOM05M005115 ORTHO05M006582 1.4e-271 939.1 693 74.2
Dexi9A01G0002790 Digitaria exilis HOM05M005115 ORTHO05M006582 1.5e-270 935.6 812 63.3
Pp3c20_710 Physcomitrium patens HOM05M005115 ORTHO05M006582 4.9e-253 877.5 851 53.7
Solyc10g085060.3 Solanum lycopersicum HOM05M005115 ORTHO05M006582 4.6e-243 844.3 714 61.1
SMO145G0033 Selaginella moellendorffii HOM05M005115 ORTHO05M006582 1.1e-241 839.7 830 54.8
Mapoly0103s0063 Marchantia polymorpha HOM05M005115 ORTHO05M006582 2.5e-241 838.6 874 52.5
SEGI_02222 Sequoiadendron giganteum HOM05M005115 ORTHO05M006582 2.0e-222 775.8 682 61.9
CALSI_Maker00013869 Calamus simplicifolius HOM05M005115 ORTHO05M006582 5.5e-196 688.0 446 73.1
AagrBONN_evm.TU.Sc2ySwM_369.563 Anthoceros agrestis HOM05M005115 ORTHO05M006582 2.6e-177 625.9 613 57.7
PH02Gene41120 Phyllostachys edulis HOM05M005115 ORTHO05M006582 1.8e-151 540.0 297 87.5
Cre04.g214097 Chlamydomonas reinhardtii HOM05M005115 ORTHO05M006582 1.2e-131 474.2 994 36.3
CBR_g8542 Chara braunii HOM05M005115 ORTHO05M006582 1.5e-129 467.2 691 42.5
MCO10G178 Micromonas commoda HOM05M005115 ORTHO05M006582 6.0e-126 455.3 843 36.1
CALSI_Maker00013858 Calamus simplicifolius HOM05M005115 ORTHO05M006582 2.7e-110 403.3 390 57.4
CALSI_Maker00032223 Calamus simplicifolius HOM05M005115 ORTHO05M006582 8.1e-107 391.7 419 57.8
PRCOL_00002974 Prasinoderma coloniale HOM05M005115 ORTHO05M006582 8.1e-91 338.6 991 31.0
Zm00007a00043370 Zea mays B104 HOM05M005115 ORTHO05M006582 5.0e-80 302.8 161 88.8
GWHGASIY043448 Secale cereale HOM05M005115 ORTHO05M006582 2.0e-73 280.8 144 92.4
evm.TU.AsparagusV1_05.1322.V1.1 Asparagus officinalis HOM05M005115 ORTHO05M008801 6.1e-62 242.7 404 42.1
Zm00007a00027174 Zea mays B104 HOM05M005115 ORTHO05M006582 3.5e-49 200.3 101 92.1
Zm00007a00020364 Zea mays B104 HOM05M005115 ORTHO05M006582 1.0e-48 198.7 98 93.9
SEGI_09667 Sequoiadendron giganteum HOM05M005115 ORTHO05M006582 9.8e-36 155.6 106 67.0
V3.Lp_chr7_0.1G536 Lolium perenne HOM05M005115 ORTHO05M123249 4.4e-12 77.0 67 67.2


User provided reference genes

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