Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
V3.Lp_chr7_0.1G1212 Lolium perenne HOM05M001115 ORTHO05M007197 2.8e-92 341.3 188 100.0
V3.Lp_scaffold_4559G10 Lolium perenne HOM05M001115 ORTHO05M007197 2.8e-92 341.3 188 100.0
V3.Lp_scaffold_4807G6 Lolium perenne HOM05M001115 ORTHO05M007197 2.8e-92 341.3 188 100.0
V3.Lp_scaffold_5331G8 Lolium perenne HOM05M001115 ORTHO05M007197 2.8e-92 341.3 188 100.0
V3.Lp_scaffold_891G14 Lolium perenne HOM05M001115 ORTHO05M007197 2.8e-92 341.3 188 100.0
Horvu_MOREX_Un01G092800 Hordeum vulgare HOM05M001115 ORTHO05M007197 2.9e-89 331.3 188 96.3
Horvu_MOREX_5H01G373800 Hordeum vulgare HOM05M001115 ORTHO05M007197 3.8e-89 330.9 188 96.8
TraesCS2D03G1241000 Triticum aestivum HOM05M001115 ORTHO05M007197 3.8e-89 330.9 188 96.8
TraesCS7B03G0216000 Triticum aestivum HOM05M001115 ORTHO05M007197 2.5e-88 328.2 188 96.3
Bradi1g46655 Brachypodium distachyon HOM05M001115 ORTHO05M007197 1.2e-87 325.9 188 95.2
TRITD3Bv1G075920 Triticum turgidum HOM05M001115 ORTHO05M007197 3.6e-87 324.3 185 96.2
Bradi3g27265 Brachypodium distachyon HOM05M001115 ORTHO05M007197 6.1e-87 323.6 188 94.7
TraesCS3B03G0454900 Triticum aestivum HOM05M001115 ORTHO05M007197 6.1e-87 323.6 188 95.2
OsR498G1018218000.01 Oryza sativa ssp. indica HOM05M001115 ORTHO05M007197 1.0e-86 322.8 188 95.2
TraesCS3A03G1000100 Triticum aestivum HOM05M001115 ORTHO05M007197 1.4e-86 322.4 186 95.2
TraesCS1B03G1091400 Triticum aestivum HOM05M001115 ORTHO05M007197 3.0e-86 321.2 188 94.1
OsR498G0203601700.01 Oryza sativa ssp. indica HOM05M001115 ORTHO05M007197 4.0e-86 320.9 188 94.1
TRITD3Av1G245800 Triticum turgidum HOM05M001115 ORTHO05M007197 2.0e-85 318.5 183 95.1
Zm00007a00017135 Zea mays B104 HOM05M001115 ORTHO05M005596 2.0e-85 318.5 187 93.6
TRIDC3AG060940 Triticum dicoccoides HOM05M001115 ORTHO05M007197 4.4e-85 317.4 183 95.1
Zm00007a00022331 Zea mays B104 HOM05M001115 ORTHO05M007197 4.4e-85 317.4 187 93.0
TRITD1Bv1G206420 Triticum turgidum HOM05M001115 ORTHO05M007197 9.8e-85 316.2 183 95.1
Seita.J016400 Setaria italica HOM05M001115 ORTHO05M007197 5.7e-77 290.4 166 95.2
Aco024830 Ananas comosus HOM05M001115 ORTHO05M005454 7.5e-77 290.0 183 85.8
TRIDC5BG041720 Triticum dicoccoides HOM05M001115 ORTHO05M007197 1.8e-75 285.4 182 86.8
TraesCS2D03G0482600 Triticum aestivum HOM05M001115 ORTHO05M007197 7.0e-75 283.5 162 95.7
MBI10_g47589_MAGBIO Magnolia biondii HOM05M001115 ORTHO05M007197 2.3e-73 278.5 184 83.7
AET2Gv20473200 Aegilops tauschii HOM05M001115 ORTHO05M007197 3.3e-72 274.6 161 92.5
Solyc00g500041.1 Solanum lycopersicum HOM05M001115 ORTHO05M007197 2.8e-71 271.6 188 78.7
TRIDC7AG039720 Triticum dicoccoides HOM05M001115 ORTHO05M007197 4.0e-70 267.7 157 93.6
Pahal.2G028800 Panicum hallii HOM05M001115 ORTHO05M007197 5.2e-70 267.3 148 97.3
Asa7G03181 Allium sativum HOM05M001115 ORTHO05M007197 1.2e-69 266.2 190 79.5
Solyc00g500086.1 Solanum lycopersicum HOM05M001115 ORTHO05M007197 3.4e-69 264.6 184 78.3
Solyc00g500123.1 Solanum lycopersicum HOM05M001115 ORTHO05M007197 3.4e-69 264.6 184 78.3
Solyc00g500193.1 Solanum lycopersicum HOM05M001115 ORTHO05M007197 3.4e-69 264.6 184 78.3
OsR498G0306362800.01 Oryza sativa ssp. indica HOM05M001115 ORTHO05M007197 7.5e-69 263.5 155 93.5
OsKitaake02g148901 Oryza sativa Kitaake HOM05M001115 ORTHO05M007197 9.8e-69 263.1 143 97.9
Pahal.3G376800 Panicum hallii HOM05M001115 ORTHO05M007197 1.3e-68 262.7 145 97.2
ATCG01100 Arabidopsis thaliana HOM05M001115 ORTHO05M007197 1.7e-68 262.3 184 79.3
OB06G32570 Oryza brachyantha HOM05M001115 ORTHO05M007197 1.7e-68 262.3 145 97.9
Asa7G05757 Allium sativum HOM05M001115 ORTHO05M007197 3.3e-64 248.1 171 81.9
ATR0043G018 Amborella trichopoda HOM05M001368 ORTHO05M000884 5.6e-64 247.3 171 79.5
MBI10_g47594_MAGBIO Magnolia biondii HOM05M001115 ORTHO05M007197 1.2e-63 246.1 184 75.5
TRITD7Av1G134860 Triticum turgidum HOM05M001115 ORTHO05M007197 2.8e-63 245.0 146 93.2
Asa0G04479 Allium sativum HOM05M001115 ORTHO05M007197 6.2e-63 243.8 178 77.5
GWHGASIY019875 Secale cereale HOM05M001115 ORTHO05M007197 8.0e-63 243.4 183 79.2
SEGI_20811 Sequoiadendron giganteum HOM05M001115 ORTHO05M007197 5.2e-62 240.7 182 72.5
GWHGAORA002272 Cenchrus purpureus HOM05M001115 ORTHO05M007197 4.9e-60 234.2 137 93.4
V3.Lp_chr1_0G11804 Lolium perenne HOM05M001115 ORTHO05M007197 1.1e-59 233.0 130 99.2
Ot_Chr7_g13546 Oropetium thomaeum HOM05M001368 ORTHO05M000884 1.9e-59 232.3 175 76.6
Ot_Chr7_g22392 Oropetium thomaeum HOM05M001368 ORTHO05M000884 1.9e-59 232.3 175 76.6
Ot_Un136_gn40117 Oropetium thomaeum HOM05M001368 ORTHO05M000884 1.9e-59 232.3 175 76.6
Ot_Un168_gn40560 Oropetium thomaeum HOM05M001368 ORTHO05M000884 1.9e-59 232.3 175 76.6
Ot_Un3_gn40886 Oropetium thomaeum HOM05M001368 ORTHO05M000884 1.9e-59 232.3 175 76.6
Ot_Un9_gn41195 Oropetium thomaeum HOM05M001368 ORTHO05M000884 1.9e-59 232.3 175 76.6
Potri.013G074800 Populus trichocarpa HOM05M001115 ORTHO05M007197 3.2e-59 231.5 179 72.6
ATR0924G001 Amborella trichopoda HOM05M001368 ORTHO05M000884 2.0e-58 228.8 175 72.0
OsKitaake10g165809 Oryza sativa Kitaake HOM05M001115 ORTHO05M007197 2.5e-56 221.9 131 93.9
Zm00007a00001158 Zea mays B104 HOM05M001115 ORTHO05M005454 2.8e-55 218.4 131 92.4
Horvu_MOREX_4H01G182500 Hordeum vulgare HOM05M001115 ORTHO05M007197 6.8e-54 213.8 131 89.3
Horvu_MOREX_3H01G124200 Hordeum vulgare HOM05M001115 ORTHO05M007197 5.8e-53 210.7 131 90.1
AET5Gv20781000 Aegilops tauschii HOM05M001115 ORTHO05M007197 8.3e-52 206.8 116 94.8
OsR498G0611972900.01 Oryza sativa ssp. indica HOM05M001115 ORTHO05M007197 8.3e-52 206.8 115 97.4
Pahal.9G286800 Panicum hallii HOM05M001115 ORTHO05M007197 1.9e-51 205.7 126 90.5
Zm00007a00002176 Zea mays B104 HOM05M001115 ORTHO05M007197 1.0e-49 199.9 131 87.0
Asa6G03870 Allium sativum HOM05M001115 ORTHO05M007197 4.0e-46 188.0 143 72.7
Solyc11g021233.1 Solanum lycopersicum HOM05M001115 ORTHO05M007197 4.0e-46 188.0 189 60.3
AET0Gv20040900 Aegilops tauschii HOM05M001115 ORTHO05M007197 1.9e-43 179.1 102 95.1
V3.Lp_chr3_0G11490 Lolium perenne HOM05M001115 ORTHO05M007197 7.8e-42 173.7 93 100.0
Asa5G04354 Allium sativum HOM05M001115 ORTHO05M007197 3.3e-40 168.3 134 73.9
TRIDC3AG071540 Triticum dicoccoides HOM05M001115 ORTHO05M007197 1.2e-39 166.4 111 82.9
Asa0G01128 Allium sativum HOM05M001115 ORTHO05M007197 4.0e-38 161.4 150 66.7
SMO086G0018 Selaginella moellendorffii HOM05M001115 ORTHO05M007197 8.4e-36 153.7 139 62.6
Asa6G04204 Allium sativum HOM05M001115 ORTHO05M007197 1.2e-34 149.8 125 70.4
Solyc02g011800.1 Solanum lycopersicum HOM05M001115 ORTHO05M007197 6.0e-34 147.5 158 59.5
Asa4G06097 Allium sativum HOM05M001115 ORTHO05M007197 6.4e-28 127.5 92 78.3
Mapoly0167s0016 Marchantia polymorpha HOM05M001115 ORTHO05M007197 6.4e-28 127.5 141 53.2
V3.Lp_chr3_0G21868 Lolium perenne HOM05M001115 ORTHO05M007197 4.6e-26 121.3 68 98.5
Aco007491 Ananas comosus HOM05M001115 ORTHO05M007197 7.9e-26 120.6 72 83.3
Ot_Un6_gn41091 Oropetium thomaeum HOM05M001115 ORTHO05M007308 2.6e-21 105.5 128 45.3
DexiUA01G0026120 Digitaria exilis HOM05M001115 ORTHO05M007197 5.8e-21 104.4 156 38.5
Asa8G01341 Allium sativum HOM05M001968 ORTHO05M007197 1.3e-20 103.2 168 47.6
Pp3c11_850 Physcomitrium patens HOM05M005866 ORTHO05M007308 3.8e-20 101.7 120 45.8
Aco023463 Ananas comosus HOM05M001115 ORTHO05M007197 4.2e-19 98.2 59 84.7
ATR0535G001 Amborella trichopoda HOM05M001115 ORTHO05M007197 1.1e-16 90.1 52 86.5
Solyc00g094530.1 Solanum lycopersicum HOM05M005866 ORTHO05M007308 2.1e-15 85.9 121 40.5
ATMG01275 Arabidopsis thaliana HOM05M005866 ORTHO05M007308 8.1e-15 84.0 121 40.5
Zosma07g02600 Zostera marina HOM05M002778 ORTHO05M005786 1.1e-14 83.6 152 34.2
GWHGASIY015198 Secale cereale HOM05M005866 ORTHO05M007308 6.9e-14 80.9 125 38.4
GWHGASIY036602 Secale cereale HOM05M005866 ORTHO05M007308 6.9e-14 80.9 125 38.4
Seita.J010600 Setaria italica HOM05M005866 ORTHO05M007308 9.0e-14 80.5 125 38.4
AET0Gv20080100 Aegilops tauschii HOM05M005866 ORTHO05M007308 3.4e-13 78.6 114 40.4
AET3Gv20386500 Aegilops tauschii HOM05M005866 ORTHO05M007308 3.4e-13 78.6 114 40.4
Horvu_MOREX_Un01G008900 Hordeum vulgare HOM05M005866 ORTHO05M007308 3.4e-13 78.6 129 36.4
OsR498G0022192300.01 Oryza sativa ssp. indica HOM05M005866 ORTHO05M007308 3.4e-13 78.6 114 40.4
TraesCS3D03G0379900 Triticum aestivum HOM05M005866 ORTHO05M007308 3.4e-13 78.6 114 40.4
TraesCS4B03G0268700 Triticum aestivum HOM05M005866 ORTHO05M007308 3.4e-13 78.6 114 40.4
TraesCS5B03G0075900 Triticum aestivum HOM05M005866 ORTHO05M007308 3.4e-13 78.6 114 40.4
TRITD3Bv1G038220 Triticum turgidum HOM05M005866 ORTHO05M007308 3.4e-13 78.6 129 36.4
TRITD5Bv1G135430 Triticum turgidum HOM05M005866 ORTHO05M007308 3.4e-13 78.6 114 40.4
TRITD7Bv1G057720 Triticum turgidum HOM05M005866 ORTHO05M007308 3.4e-13 78.6 129 36.4
TraesCS6B03G0958400 Triticum aestivum HOM05M005866 ORTHO05M007308 5.8e-13 77.8 129 35.7
TRITD4Av1G032550 Triticum turgidum HOM05M005866 ORTHO05M007308 5.8e-13 77.8 129 36.4
TRITD6Bv1G180870 Triticum turgidum HOM05M005866 ORTHO05M007308 5.8e-13 77.8 129 35.7
Horvu_MOREX_2H01G027100 Hordeum vulgare HOM05M005866 ORTHO05M007308 7.6e-13 77.4 130 35.4
TraesCS3B03G0025400 Triticum aestivum HOM05M005866 ORTHO05M007308 1.0e-12 77.0 129 36.4
TraesCS3B03G0025500 Triticum aestivum HOM05M005866 ORTHO05M007308 1.0e-12 77.0 129 36.4
TraesCS3B03G0025600 Triticum aestivum HOM05M005866 ORTHO05M007308 1.0e-12 77.0 129 36.4
TraesCS6A03G0998900 Triticum aestivum HOM05M005866 ORTHO05M007308 1.0e-12 77.0 129 35.7
TraesCS7B03G1349200 Triticum aestivum HOM05M005866 ORTHO05M007308 1.0e-12 77.0 129 36.4
TRITD7Bv1G199550 Triticum turgidum HOM05M005866 ORTHO05M007308 1.0e-12 77.0 129 35.7
TraesCS6A03G0269800 Triticum aestivum HOM05M005866 ORTHO05M007308 1.3e-12 76.6 114 39.5
TRITD6Av1G035720 Triticum turgidum HOM05M005866 ORTHO05M007308 1.3e-12 76.6 129 35.7
AET0Gv20080400 Aegilops tauschii HOM05M005866 ORTHO05M007308 1.7e-12 76.3 97 42.3
AET3Gv20386400 Aegilops tauschii HOM05M005866 ORTHO05M007308 1.7e-12 76.3 97 42.3
Ot_Un165_gn40450 Oropetium thomaeum HOM05M005866 ORTHO05M007308 1.7e-12 76.3 97 42.3
TraesCS4A03G0140000 Triticum aestivum HOM05M005866 ORTHO05M007308 1.7e-12 76.3 97 42.3
TRIDC4AG060020 Triticum dicoccoides HOM05M001115 ORTHO05M010473 1.7e-12 76.3 38 100.0
TraesCS3A03G1061600 Triticum aestivum HOM05M005866 ORTHO05M007308 2.2e-12 75.9 118 38.1
TraesCS5B03G0853500 Triticum aestivum HOM05M005866 ORTHO05M007308 2.2e-12 75.9 129 36.4
Zosma52g00530 Zostera marina HOM05M005866 ORTHO05M007308 2.2e-12 75.9 98 42.9
AET6Gv20473000 Aegilops tauschii HOM05M005866 ORTHO05M007308 2.9e-12 75.5 95 42.1
AT2G07785 Arabidopsis thaliana HOM05M005866 ORTHO05M007308 2.9e-12 75.5 98 42.9
TRITD5Bv1G178920 Triticum turgidum HOM05M005866 ORTHO05M007308 2.9e-12 75.5 129 35.7
TRITD7Av1G208900 Triticum turgidum HOM05M005866 ORTHO05M007308 2.9e-12 75.5 129 35.7
Asa0G03548 Allium sativum HOM05M005866 ORTHO05M007308 3.8e-12 75.1 98 41.8
TraesCS2D03G0567500 Triticum aestivum HOM05M005866 ORTHO05M007308 3.8e-12 75.1 114 39.5
Asa7G03484 Allium sativum HOM05M005866 ORTHO05M007308 6.5e-12 74.3 121 38.0
TraesCS7A03G0939200 Triticum aestivum HOM05M005866 ORTHO05M007308 6.5e-12 74.3 129 35.7
TraesCS7A03G0188700 Triticum aestivum HOM05M005866 ORTHO05M007308 8.4e-12 73.9 127 35.4
TRIDC6BG068530 Triticum dicoccoides HOM05M001115 ORTHO05M007197 8.4e-12 73.9 41 92.7
SEGI_30332 Sequoiadendron giganteum HOM05M005866 ORTHO05M007308 1.1e-11 73.6 137 34.3
TraesCS1A03G0239500 Triticum aestivum HOM05M005866 ORTHO05M007308 1.1e-11 73.6 129 35.7
TraesCS4D03G0275200 Triticum aestivum HOM05M005866 ORTHO05M007308 1.1e-11 73.6 118 38.1
TraesCS5D03G0504000 Triticum aestivum HOM05M005866 ORTHO05M007308 1.1e-11 73.6 118 37.3
Asa0G03550 Allium sativum HOM05M005866 ORTHO05M007308 2.5e-11 72.4 98 40.8
EJB05_44391 Eragrostis curvula HOM05M005866 ORTHO05M007308 2.5e-11 72.4 93 43.0
AET5Gv20510000 Aegilops tauschii HOM05M005866 ORTHO05M007308 4.2e-11 71.6 97 40.2
Asa4G05679 Allium sativum HOM05M005866 ORTHO05M007308 5.5e-11 71.2 101 39.6
Seita.7G059800 Setaria italica HOM05M005866 ORTHO05M007308 5.5e-11 71.2 125 36.0
Asa4G06593 Allium sativum HOM05M005866 ORTHO05M007308 1.2e-10 70.1 99 41.4
Solyc07g032420.3 Solanum lycopersicum HOM05M001368 ORTHO05M000884 1.2e-10 70.1 189 34.4
TraesCS4A03G0890500 Triticum aestivum HOM05M005866 ORTHO05M007308 1.2e-10 70.1 127 34.6
Horvu_MOREX_2H01G323100 Hordeum vulgare HOM05M005866 ORTHO05M007308 3.5e-10 68.6 97 39.2
TRITD3Bv1G121320 Triticum turgidum HOM05M005866 ORTHO05M007308 4.6e-10 68.2 111 37.8
TraesCS2B03G0136200 Triticum aestivum HOM05M005866 ORTHO05M007308 1.0e-09 67.0 114 38.6
Ot_Un4_gn40975 Oropetium thomaeum HOM05M005866 ORTHO05M007308 3.0e-09 65.5 123 33.3
Horvu_MOREX_7H01G409600 Hordeum vulgare HOM05M005866 ORTHO05M007308 6.7e-09 64.3 95 37.9
SEGI_40319 Sequoiadendron giganteum HOM05M005866 ORTHO05M007308 8.7e-09 63.9 130 34.6
CDE02G0273 Ceratophyllum demersum HOM05M005866 ORTHO05M007308 1.1e-08 63.5 93 38.7
Ot_Un6_gn41088 Oropetium thomaeum HOM05M001115 ORTHO05M007197 1.5e-08 63.2 81 45.7
Pahal.8G213600 Panicum hallii HOM05M005866 ORTHO05M007308 7.4e-08 60.8 82 40.2
Solyc05g023920.1 Solanum lycopersicum HOM05M005866 ORTHO05M007308 1.3e-07 60.1 96 37.5
Asa3G04654 Allium sativum HOM05M005866 ORTHO05M007308 4.8e-07 58.2 91 37.4
Asa2G00109 Allium sativum HOM05M005866 ORTHO05M007308 6.9e-06 54.3 65 41.5


User provided reference genes

Program Settings