Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
V3.Lp_chr7_0.1G1216 Lolium perenne HOM05M002569 ORTHO05M006849 1.1e-90 335.9 177 100.0
V3.Lp_chr7_0.1G1240 Lolium perenne HOM05M002569 ORTHO05M006849 1.1e-90 335.9 177 100.0
V3.Lp_scaffold_4559G14 Lolium perenne HOM05M002569 ORTHO05M006849 1.1e-90 335.9 177 100.0
V3.Lp_scaffold_4807G10 Lolium perenne HOM05M002569 ORTHO05M006849 1.1e-90 335.9 177 100.0
V3.Lp_scaffold_5331G4 Lolium perenne HOM05M002569 ORTHO05M006849 1.1e-90 335.9 177 100.0
V3.Lp_scaffold_891G10 Lolium perenne HOM05M002569 ORTHO05M006849 1.1e-90 335.9 177 100.0
GWHGASIY019873 Secale cereale HOM05M002569 ORTHO05M006849 1.9e-90 335.1 177 99.4
TraesCS2D03G0156200 Triticum aestivum HOM05M002569 ORTHO05M006849 1.9e-90 335.1 177 99.4
TraesCS2D03G1241400 Triticum aestivum HOM05M002569 ORTHO05M006849 1.9e-90 335.1 177 99.4
Horvu_MOREX_Un01G100100 Hordeum vulgare HOM05M002569 ORTHO05M006849 7.3e-90 333.2 177 98.3
TraesCS3A03G0999800 Triticum aestivum HOM05M002569 ORTHO05M006849 3.6e-89 330.9 177 97.7
TraesCS3B03G0454500 Triticum aestivum HOM05M002569 ORTHO05M006849 4.7e-89 330.5 177 97.7
TRIDC3AG060920 Triticum dicoccoides HOM05M002569 ORTHO05M006849 2.3e-88 328.2 177 96.6
TRIDC3BG002770 Triticum dicoccoides HOM05M002569 ORTHO05M006849 8.9e-88 326.2 177 97.2
TRIDC7BG017860 Triticum dicoccoides HOM05M002569 ORTHO05M006849 8.9e-88 326.2 177 96.6
TraesCS5B03G0640700 Triticum aestivum HOM05M002569 ORTHO05M006849 3.4e-87 324.3 177 97.2
TRITD5Bv1G141930 Triticum turgidum HOM05M002569 ORTHO05M006849 3.4e-87 324.3 177 97.2
GWHGAORA003697 Cenchrus purpureus HOM05M002569 ORTHO05M006849 4.4e-87 323.9 177 94.9
OsKitaake02g153300 Oryza sativa Kitaake HOM05M002569 ORTHO05M006849 4.4e-87 323.9 177 96.0
OsKitaake10g165811 Oryza sativa Kitaake HOM05M002569 ORTHO05M006849 4.4e-87 323.9 177 96.0
OsKitaake10g165829 Oryza sativa Kitaake HOM05M002569 ORTHO05M006849 4.4e-87 323.9 177 96.0
OsKitaake12g099700 Oryza sativa Kitaake HOM05M002569 ORTHO05M006849 4.4e-87 323.9 177 96.0
Pahal.3G033700 Panicum hallii HOM05M002569 ORTHO05M006849 4.4e-87 323.9 177 96.0
TRIDC4AG060050 Triticum dicoccoides HOM05M002569 ORTHO05M006849 1.3e-86 322.4 177 95.5
OsKitaake02g154400 Oryza sativa Kitaake HOM05M002569 ORTHO05M006849 1.7e-86 322.0 177 95.5
Ot_Un136_gn40171 Oropetium thomaeum HOM05M002569 ORTHO05M006849 4.9e-86 320.5 177 96.0
Ot_Un168_gn40611 Oropetium thomaeum HOM05M002569 ORTHO05M006849 4.9e-86 320.5 177 96.0
Ot_Un3_gn40922 Oropetium thomaeum HOM05M002569 ORTHO05M006849 4.9e-86 320.5 177 96.0
Ot_Un9_gn41212 Oropetium thomaeum HOM05M002569 ORTHO05M006849 4.9e-86 320.5 177 96.0
OsR498G0816144700.01 Oryza sativa ssp. indica HOM05M002569 ORTHO05M006849 4.9e-86 320.5 177 94.9
OsKitaake07g110700 Oryza sativa Kitaake HOM05M002569 ORTHO05M006849 4.6e-84 313.9 177 94.4
TraesCS4A03G0316300 Triticum aestivum HOM05M002569 ORTHO05M006849 3.0e-83 311.2 177 93.2
Zm00007a00022332 Zea mays B104 HOM05M002569 ORTHO05M006849 8.0e-81 303.1 167 94.0
Horvu_MOREX_2H01G297300 Hordeum vulgare HOM05M002569 ORTHO05M006849 4.3e-74 280.8 156 94.9
Asa0G01759 Allium sativum HOM05M002569 ORTHO05M006849 2.8e-73 278.1 177 83.1
Bradi1g05762 Brachypodium distachyon HOM05M002569 ORTHO05M006849 3.2e-69 264.6 142 96.5
GWHGASIY041265 Secale cereale HOM05M002569 ORTHO05M006849 3.9e-67 257.7 141 96.5
TRITD1Bv1G206400 Triticum turgidum HOM05M002569 ORTHO05M006849 1.1e-66 256.1 134 97.8
TraesCS1B03G1091100 Triticum aestivum HOM05M002569 ORTHO05M006849 3.3e-66 254.6 134 97.0
TraesCS5B03G0650600 Triticum aestivum HOM05M002569 ORTHO05M006849 3.3e-66 254.6 141 94.3
TRIDC5BG041740 Triticum dicoccoides HOM05M002569 ORTHO05M006849 3.3e-66 254.6 141 94.3
ATCG01080 Arabidopsis thaliana HOM05M002569 ORTHO05M006849 9.5e-66 253.1 177 75.7
Aco030531 Ananas comosus HOM05M002569 ORTHO05M006849 2.1e-65 251.9 164 80.5
Aco020234 Ananas comosus HOM05M002569 ORTHO05M006849 3.6e-65 251.1 164 80.5
Aco030031 Ananas comosus HOM05M002569 ORTHO05M006849 3.6e-65 251.1 164 80.5
Solyc03g013600.1 Solanum lycopersicum HOM05M002569 ORTHO05M006849 2.2e-62 241.9 177 72.3
TRITD1Bv1G042880 Triticum turgidum HOM05M002569 ORTHO05M006849 1.6e-60 235.7 132 93.9
TRITD3Av1G245780 Triticum turgidum HOM05M001115 ORTHO05M005596 5.6e-58 227.3 118 97.5
TRITD3Bv1G075930 Triticum turgidum HOM05M001115 ORTHO05M005596 7.3e-58 226.9 118 98.3
Solyc02g011770.1 Solanum lycopersicum HOM05M002569 ORTHO05M006849 5.3e-56 220.7 177 67.2
TRIDC6AG053960 Triticum dicoccoides HOM05M002569 ORTHO05M006849 1.5e-55 219.2 143 81.8
TRIDC1AG031540 Triticum dicoccoides HOM05M002569 ORTHO05M006849 4.4e-55 217.6 122 91.8
TRITD4Av1G078280 Triticum turgidum HOM05M001115 ORTHO05M005596 1.7e-54 215.7 118 92.4
GWHGASIY041056 Secale cereale HOM05M002569 ORTHO05M006849 2.2e-54 215.3 141 84.4
TRIDC2BG066980 Triticum dicoccoides HOM05M002569 ORTHO05M006849 4.8e-49 197.6 99 98.0
AET4Gv20392400 Aegilops tauschii HOM05M002569 ORTHO05M006849 6.2e-49 197.2 99 97.0
OsR498G0611893000.01 Oryza sativa ssp. indica HOM05M002569 ORTHO05M006849 1.4e-48 196.1 99 97.0
Solyc07g026910.3 Solanum lycopersicum HOM05M002569 ORTHO05M006849 5.3e-48 194.1 135 74.1
TRIDC4AG020370 Triticum dicoccoides HOM05M002569 ORTHO05M006849 2.2e-46 188.7 99 92.9
Aco030998 Ananas comosus HOM05M001115 ORTHO05M005454 6.4e-46 187.2 111 83.8
Seita.J016600 Setaria italica HOM05M002569 ORTHO05M006849 3.5e-44 181.4 135 72.6
AET6Gv20889100 Aegilops tauschii HOM05M002569 ORTHO05M006849 3.0e-43 178.3 98 89.8
V3.Lp_chr3_0G9204 Lolium perenne HOM05M002569 ORTHO05M006849 8.7e-43 176.8 96 97.9
Glyma.19G081000 Glycine max HOM05M002569 ORTHO05M006849 8.1e-41 170.2 150 64.7
TraesCS5A03G0024800 Triticum aestivum HOM05M002569 ORTHO05M006849 1.4e-37 159.5 87 98.9
Potri.013G075100 Populus trichocarpa HOM05M002569 ORTHO05M006849 7.9e-36 153.7 118 66.9
TRIDC2BG064860 Triticum dicoccoides HOM05M002569 ORTHO05M006849 3.4e-31 138.3 67 95.5
GWHGAORA014195 Cenchrus purpureus HOM05M002569 ORTHO05M006849 4.5e-31 137.9 89 86.5
AET5Gv20780800 Aegilops tauschii HOM05M002569 ORTHO05M006849 7.6e-31 137.1 76 100.0
TRITD4Av1G093810 Triticum turgidum HOM05M002569 ORTHO05M006849 7.6e-31 137.1 84 92.9
TraesCS4A03G0393700 Triticum aestivum HOM05M002569 ORTHO05M006849 8.4e-30 133.7 84 91.7
Bradi1g24635 Brachypodium distachyon HOM05M002569 ORTHO05M006849 5.1e-27 124.4 63 98.4
TRIDC7AG039740 Triticum dicoccoides HOM05M002569 ORTHO05M006849 6.9e-24 114.0 53 96.2
Zm00007a00017135 Zea mays B104 HOM05M001115 ORTHO05M005596 1.5e-23 112.8 60 93.3
TRIDC3BG086530 Triticum dicoccoides HOM05M002569 ORTHO05M006849 1.0e-22 110.2 69 81.2
TRIDC3AG003840 Triticum dicoccoides HOM05M002569 ORTHO05M006849 2.2e-22 109.0 59 100.0
Solyc11g021217.1 Solanum lycopersicum HOM05M002569 ORTHO05M006849 6.5e-22 107.5 85 74.1
SMO086G0016 Selaginella moellendorffii HOM05M002569 ORTHO05M006849 1.5e-18 96.3 176 39.2
TRIDC3AG071560 Triticum dicoccoides HOM05M002569 ORTHO05M006849 2.2e-17 92.4 53 92.5
Mapoly0048s0040 Marchantia polymorpha HOM05M002569 ORTHO05M006849 2.9e-14 82.0 99 47.5
Zm00007a00019265 Zea mays B104 HOM05M001115 ORTHO05M005596 1.9e-13 79.3 44 93.2
Sevir.6G138700 Setaria viridis HOM05M002569 ORTHO05M006849 4.4e-10 68.2 43 86.0


User provided reference genes

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