Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
V3.Lp_chr3_0G22 Lolium perenne HOM05M002371 ORTHO05M002356 1.1e-44 182.2 92 100.0
V3.Lp_chr7_0.1G1182 Lolium perenne HOM05M002371 ORTHO05M002356 1.1e-44 182.2 92 100.0
V3.Lp_chr7_0.1G1224 Lolium perenne HOM05M002371 ORTHO05M002356 1.1e-44 182.2 92 100.0
V3.Lp_scaffold_4807G34 Lolium perenne HOM05M002371 ORTHO05M002356 1.1e-44 182.2 92 100.0
V3.Lp_scaffold_5331G28 Lolium perenne HOM05M002371 ORTHO05M002356 1.1e-44 182.2 92 100.0
V3.Lp_scaffold_891G38 Lolium perenne HOM05M002371 ORTHO05M002356 1.1e-44 182.2 92 100.0
Ot_Un136_gn40094 Oropetium thomaeum HOM05M002371 ORTHO05M002356 1.1e-44 182.2 92 100.0
Ot_Un136_gn40111 Oropetium thomaeum HOM05M002371 ORTHO05M002356 1.1e-44 182.2 92 100.0
Ot_Un168_gn40555 Oropetium thomaeum HOM05M002371 ORTHO05M002356 1.1e-44 182.2 92 100.0
Ot_Un169_gn40624 Oropetium thomaeum HOM05M002371 ORTHO05M002356 1.1e-44 182.2 92 100.0
Ot_Un171_gn40673 Oropetium thomaeum HOM05M002371 ORTHO05M002356 1.1e-44 182.2 92 100.0
Ot_Un3_gn40880 Oropetium thomaeum HOM05M002371 ORTHO05M002356 1.1e-44 182.2 92 100.0
Ot_Un3_gn40902 Oropetium thomaeum HOM05M002371 ORTHO05M002356 1.1e-44 182.2 92 100.0
Ot_Un9_gn41208 Oropetium thomaeum HOM05M002371 ORTHO05M002356 1.1e-44 182.2 92 100.0
OsKitaake01g359800 Oryza sativa Kitaake HOM05M002371 ORTHO05M002356 1.6e-43 178.3 92 97.8
OsKitaake04g051900 Oryza sativa Kitaake HOM05M002371 ORTHO05M002356 1.6e-43 178.3 92 97.8
OsKitaake10g138651 Oryza sativa Kitaake HOM05M002371 ORTHO05M002356 1.6e-43 178.3 92 97.8
OsKitaakeM051601 Oryza sativa Kitaake HOM05M002371 ORTHO05M002356 1.6e-43 178.3 92 97.8
Zm00007a00005728 Zea mays B104 HOM05M002371 ORTHO05M002356 1.0e-42 175.6 89 98.9
Zm00007a00006572 Zea mays B104 HOM05M002371 ORTHO05M002356 1.0e-42 175.6 89 98.9
Zm00007a00022340 Zea mays B104 HOM05M002371 ORTHO05M002356 1.0e-42 175.6 89 98.9
Zm00007a00029371 Zea mays B104 HOM05M002371 ORTHO05M002356 1.0e-42 175.6 89 98.9
Zm00007a00042307 Zea mays B104 HOM05M002371 ORTHO05M002356 1.0e-42 175.6 89 98.9
Zm00007a00042558 Zea mays B104 HOM05M002371 ORTHO05M002356 1.0e-42 175.6 89 98.9
Zm00007a00017130 Zea mays B104 HOM05M000535 ORTHO05M000804 2.9e-42 174.1 88 98.9
ATR1169G002 Amborella trichopoda HOM05M002371 ORTHO05M002356 5.5e-41 169.9 92 92.4
DDU643G0096 Dioscorea dumetorum HOM05M002371 ORTHO05M002356 5.5e-41 169.9 92 92.4
MBI08_g48230_MAGBIO Magnolia biondii HOM05M002371 ORTHO05M002356 5.5e-41 169.9 92 92.4
DDU125G0043 Dioscorea dumetorum HOM05M002371 ORTHO05M002356 2.7e-40 167.5 91 92.3
DDU688G0001 Dioscorea dumetorum HOM05M002371 ORTHO05M002356 2.7e-40 167.5 91 92.3
Asa2G02073 Allium sativum HOM05M002371 ORTHO05M002356 2.3e-39 164.5 88 93.2
Asa7G06922 Allium sativum HOM05M002371 ORTHO05M002356 2.3e-39 164.5 88 93.2
Asa0G01628 Allium sativum HOM05M002371 ORTHO05M002356 6.8e-39 162.9 90 90.0
Misin05G382600 Miscanthus sinensis HOM05M002371 ORTHO05M002356 1.5e-38 161.8 88 90.9
Asa7G00320 Allium sativum HOM05M002371 ORTHO05M002356 9.8e-38 159.1 88 89.8
TraesCS4B03G1013400 Triticum aestivum HOM05M002371 ORTHO05M002356 9.8e-38 159.1 90 87.8
Asa6G04083 Allium sativum HOM05M002371 ORTHO05M002356 1.1e-36 155.6 90 84.4
Zm00007a00001149 Zea mays B104 HOM05M002371 ORTHO05M002356 2.7e-35 151.0 89 87.6
V3.Lp_chr6_0G3646 Lolium perenne HOM05M002371 ORTHO05M002356 4.5e-35 150.2 80 93.8
DDU125G0010 Dioscorea dumetorum HOM05M002371 ORTHO05M002356 7.7e-35 149.4 78 94.9
DDU125G0053 Dioscorea dumetorum HOM05M002371 ORTHO05M002356 7.7e-35 149.4 78 94.9
DDU688G0027 Dioscorea dumetorum HOM05M002371 ORTHO05M002356 7.7e-35 149.4 78 94.9
ATCG00905 Arabidopsis thaliana HOM05M003798 ORTHO05M002356 2.2e-34 147.9 77 93.5
ATCG01230 Arabidopsis thaliana HOM05M003798 ORTHO05M002356 2.2e-34 147.9 77 93.5
Asa0G01494 Allium sativum HOM05M002371 ORTHO05M002356 2.0e-30 134.8 81 82.7
OsKitaake10g035100 Oryza sativa Kitaake HOM05M002371 ORTHO05M002356 2.6e-30 134.4 78 85.9
Asa2G05383 Allium sativum HOM05M002371 ORTHO05M002356 5.7e-30 133.3 74 89.2
Sobic.004G303433 Sorghum bicolor HOM05M002371 ORTHO05M002356 8.3e-29 129.4 68 92.6
OsKitaakeM050405 Oryza sativa Kitaake HOM05M002371 ORTHO05M002356 1.8e-28 128.3 65 98.5
Asa0G02757 Allium sativum HOM05M002371 ORTHO05M002356 3.8e-26 120.6 68 86.8
CDE02G2847 Ceratophyllum demersum HOM05M000535 ORTHO05M001593 4.2e-25 117.1 61 91.8
SMO364G0929 Selaginella moellendorffii HOM05M003798 ORTHO05M002356 4.2e-25 117.1 86 64.0
AagrBONN_evm.TU.Sc2ySwM_344.1250 Anthoceros agrestis HOM05M003798 ORTHO05M002356 5.6e-25 116.7 78 71.8
Potri.008G208300 Populus trichocarpa HOM05M003798 ORTHO05M002356 5.6e-25 116.7 78 75.6
Spipo3G0004900 Spirodela polyrhiza HOM05M002371 ORTHO05M002356 7.2e-25 116.3 70 82.9
SMO116G0334 Selaginella moellendorffii HOM05M003798 ORTHO05M002356 4.7e-24 113.6 78 71.8
AET1Gv20174500 Aegilops tauschii HOM05M002371 ORTHO05M002356 5.7e-22 106.7 51 100.0
AET4Gv20401900 Aegilops tauschii HOM05M002371 ORTHO05M002356 5.7e-22 106.7 51 100.0
AET5Gv20729400 Aegilops tauschii HOM05M002371 ORTHO05M002356 5.7e-22 106.7 51 100.0
Asa2G01092 Allium sativum HOM05M002371 ORTHO05M002356 5.7e-22 106.7 64 82.8
Asa0G02715 Allium sativum HOM05M003798 ORTHO05M002356 2.2e-21 104.8 77 63.6
Asa1G04884 Allium sativum HOM05M003798 ORTHO05M002356 2.2e-21 104.8 77 63.6
Asa8G01658 Allium sativum HOM05M003798 ORTHO05M002356 2.2e-21 104.8 77 63.6
AET1Gv20353100 Aegilops tauschii HOM05M003798 ORTHO05M002356 3.7e-21 104.0 78 62.8
AET0Gv20052800 Aegilops tauschii HOM05M002371 ORTHO05M002356 4.9e-21 103.6 51 98.0
Asa2G05696 Allium sativum HOM05M002371 ORTHO05M002356 4.9e-21 103.6 65 81.5
GWHGASIY026844 Secale cereale HOM05M003798 ORTHO05M002356 4.9e-21 103.6 78 62.8
Sevir.9G164500 Setaria viridis HOM05M003798 ORTHO05M002356 4.9e-21 103.6 86 58.1
TRITD4Bv1G070650 Triticum turgidum HOM05M003798 ORTHO05M002356 4.9e-21 103.6 78 64.1
GWHGAORA019606 Cenchrus purpureus HOM05M003798 ORTHO05M002356 6.4e-21 103.2 78 62.8
Horvu_MOREX_Un01G066900 Hordeum vulgare HOM05M003798 ORTHO05M002356 6.4e-21 103.2 78 62.8
Ot_Un162_gn40335 Oropetium thomaeum HOM05M003798 ORTHO05M002356 6.4e-21 103.2 78 62.8
Ot_Un163_gn40348 Oropetium thomaeum HOM05M003798 ORTHO05M002356 6.4e-21 103.2 78 62.8
OsKitaake12g148700 Oryza sativa Kitaake HOM05M003798 ORTHO05M002356 6.4e-21 103.2 78 62.8
OsKitaake12g154501 Oryza sativa Kitaake HOM05M003798 ORTHO05M002356 6.4e-21 103.2 78 62.8
Seita.J009000 Setaria italica HOM05M003798 ORTHO05M002356 6.4e-21 103.2 78 62.8
Sevir.1G145520 Setaria viridis HOM05M003798 ORTHO05M002356 6.4e-21 103.2 78 62.8
TraesCS1A03G0375000 Triticum aestivum HOM05M003798 ORTHO05M002356 6.4e-21 103.2 78 62.8
TraesCS1A03G0422500 Triticum aestivum HOM05M003798 ORTHO05M002356 6.4e-21 103.2 78 62.8
TraesCS6B03G0675300 Triticum aestivum HOM05M003798 ORTHO05M002356 6.4e-21 103.2 78 62.8
TraesCS6B03G0959400 Triticum aestivum HOM05M003798 ORTHO05M002356 6.4e-21 103.2 78 62.8
TraesCS7A03G0235400 Triticum aestivum HOM05M003798 ORTHO05M002356 6.4e-21 103.2 78 62.8
TraesCS7A03G0937700 Triticum aestivum HOM05M003798 ORTHO05M002356 6.4e-21 103.2 78 62.8
TraesCS7B03G1234000 Triticum aestivum HOM05M003798 ORTHO05M002356 6.4e-21 103.2 78 62.8
TraesCS7D03G1101900 Triticum aestivum HOM05M003798 ORTHO05M002356 6.4e-21 103.2 78 62.8
TraesCSU03G0137900 Triticum aestivum HOM05M003798 ORTHO05M002356 6.4e-21 103.2 78 62.8
TRIDC1BG023440 Triticum dicoccoides HOM05M003798 ORTHO05M002356 6.4e-21 103.2 78 62.8
TRIDC4AG062600 Triticum dicoccoides HOM05M003798 ORTHO05M002356 6.4e-21 103.2 78 62.8
TRIDC5BG016040 Triticum dicoccoides HOM05M003798 ORTHO05M002356 6.4e-21 103.2 78 62.8
TRIDC7AG054030 Triticum dicoccoides HOM05M003798 ORTHO05M002356 6.4e-21 103.2 78 62.8
TRITD2Bv1G250410 Triticum turgidum HOM05M003798 ORTHO05M002356 6.4e-21 103.2 78 62.8
TRITD6Bv1G105110 Triticum turgidum HOM05M003798 ORTHO05M002356 6.4e-21 103.2 78 62.8
TRITD6Bv1G180930 Triticum turgidum HOM05M003798 ORTHO05M002356 6.4e-21 103.2 78 62.8
TRITD7Av1G028670 Triticum turgidum HOM05M003798 ORTHO05M002356 6.4e-21 103.2 78 62.8
TRIDC4BG024190 Triticum dicoccoides HOM05M003798 ORTHO05M002356 1.1e-20 102.4 78 62.8
TRITD2Bv1G264190 Triticum turgidum HOM05M003798 ORTHO05M002356 1.1e-20 102.4 78 62.8
TRIDC5AG005070 Triticum dicoccoides HOM05M003798 ORTHO05M002356 1.4e-20 102.1 78 61.5
TRITD5Av1G014750 Triticum turgidum HOM05M003798 ORTHO05M002356 1.4e-20 102.1 78 61.5
AET2Gv20395500 Aegilops tauschii HOM05M003798 ORTHO05M002356 1.8e-20 101.7 78 62.8
Misin04G092500 Miscanthus sinensis HOM05M002371 ORTHO05M002356 1.8e-20 101.7 60 85.0
TRIDC1BG026840 Triticum dicoccoides HOM05M003798 ORTHO05M002356 1.8e-20 101.7 78 61.5
AET4Gv20294300 Aegilops tauschii HOM05M003798 ORTHO05M002356 2.4e-20 101.3 78 61.5
TraesCS2D03G1309700 Triticum aestivum HOM05M003798 ORTHO05M002356 2.4e-20 101.3 78 61.5
TraesCS4D03G0277300 Triticum aestivum HOM05M003798 ORTHO05M002356 2.4e-20 101.3 78 61.5
TraesCS4D03G0580900 Triticum aestivum HOM05M003798 ORTHO05M002356 2.4e-20 101.3 78 61.5
TraesCS4D03G0748100 Triticum aestivum HOM05M003798 ORTHO05M002356 2.4e-20 101.3 78 61.5
TraesCS5A03G0048700 Triticum aestivum HOM05M003798 ORTHO05M002356 2.4e-20 101.3 77 62.3
TRITD6Bv1G018510 Triticum turgidum HOM05M003798 ORTHO05M002356 2.4e-20 101.3 78 61.5
TraesCS1A03G0376400 Triticum aestivum HOM05M003798 ORTHO05M002356 4.1e-20 100.5 78 61.5
TraesCS7A03G0953200 Triticum aestivum HOM05M003798 ORTHO05M002356 5.4e-20 100.1 74 63.5
TRIDC7AG054690 Triticum dicoccoides HOM05M003798 ORTHO05M002356 5.4e-20 100.1 74 63.5
TRITD7Bv1G225570 Triticum turgidum HOM05M003798 ORTHO05M002356 5.4e-20 100.1 78 61.5
TraesCS1B03G0480800 Triticum aestivum HOM05M003798 ORTHO05M002356 7.0e-20 99.8 78 60.3
TRITD1Bv1G093160 Triticum turgidum HOM05M003798 ORTHO05M002356 7.0e-20 99.8 78 60.3
AT2G07675 Arabidopsis thaliana HOM05M003798 ORTHO05M002356 9.2e-20 99.4 78 60.3
ATMG00980 Arabidopsis thaliana HOM05M003798 ORTHO05M002356 9.2e-20 99.4 78 60.3
Horvu_MOREX_Un01G081300 Hordeum vulgare HOM05M003798 ORTHO05M002356 9.2e-20 99.4 78 61.5
TraesCS3B03G0776000 Triticum aestivum HOM05M003798 ORTHO05M002356 9.2e-20 99.4 78 61.5
TraesCS3B03G0921000 Triticum aestivum HOM05M003798 ORTHO05M002356 9.2e-20 99.4 78 60.3
MBI10_g41321_MAGBIO Magnolia biondii HOM05M003798 ORTHO05M002356 1.2e-19 99.0 81 58.0
mito5_g00020 Musa acuminata HOM05M003798 ORTHO05M002356 1.2e-19 99.0 77 61.0
Cre02.g144400 Chlamydomonas reinhardtii HOM05M003798 ORTHO05M002356 2.0e-19 98.2 74 60.8
Misin07G334000 Miscanthus sinensis HOM05M003798 ORTHO05M002356 2.0e-19 98.2 78 60.3
TRITD7Av1G208810 Triticum turgidum HOM05M003798 ORTHO05M002356 2.0e-19 98.2 78 60.3
AET5Gv20325600 Aegilops tauschii HOM05M003798 ORTHO05M002356 2.7e-19 97.8 75 61.3
MBI05_g05342_MAGBIO Magnolia biondii HOM05M001634 ORTHO05M001555 2.7e-19 97.8 77 59.7
MBI06_g25391_MAGBIO Magnolia biondii HOM05M001634 ORTHO05M001555 2.7e-19 97.8 77 59.7
TraesCS5D03G0321500 Triticum aestivum HOM05M003798 ORTHO05M002356 2.7e-19 97.8 75 61.3
TRITD3Bv1G157070 Triticum turgidum HOM05M003798 ORTHO05M002356 2.7e-19 97.8 74 62.2
TRIDC3BG044980 Triticum dicoccoides HOM05M003798 ORTHO05M002356 3.5e-19 97.4 74 62.2
TRITD7Av1G212260 Triticum turgidum HOM05M003798 ORTHO05M002356 3.5e-19 97.4 86 54.7
TraesCS4D03G0300900 Triticum aestivum HOM05M003798 ORTHO05M002356 5.9e-19 96.7 78 57.7
AET5Gv20191800 Aegilops tauschii HOM05M003798 ORTHO05M002356 7.8e-19 96.3 78 59.0
Asa8G00258 Allium sativum HOM05M003798 ORTHO05M002356 1.3e-18 95.5 75 60.0
Sobic.002G086400 Sorghum bicolor HOM05M002371 ORTHO05M002356 1.7e-18 95.1 64 75.0
Misin12G045900 Miscanthus sinensis HOM05M003798 ORTHO05M002356 2.3e-18 94.7 78 59.0
Zm00007a00018184 Zea mays B104 HOM05M002371 ORTHO05M011429 3.0e-18 94.4 89 61.8
AET7Gv20913200 Aegilops tauschii HOM05M002371 ORTHO05M002356 3.9e-18 94.0 51 86.3
CDE02G2710 Ceratophyllum demersum HOM05M003023 ORTHO05M003684 3.9e-18 94.0 74 59.5
CDE02G1246 Ceratophyllum demersum HOM05M008415 ORTHO05M010668 8.6e-18 92.8 74 60.8
AET4Gv20767700 Aegilops tauschii HOM05M003798 ORTHO05M002356 2.5e-17 91.3 66 66.7
TRIDC3AG024100 Triticum dicoccoides HOM05M003798 ORTHO05M002356 3.6e-16 87.4 57 71.9
AET7Gv20440000 Aegilops tauschii HOM05M002371 ORTHO05M002356 1.0e-15 85.9 48 87.5
GWHGASIY014907 Secale cereale HOM05M003798 ORTHO05M002356 1.0e-15 85.9 73 56.2
DexiUA01G0022810 Digitaria exilis HOM05M003798 ORTHO05M002356 5.2e-15 83.6 53 69.8
TRIDC7BG024480 Triticum dicoccoides HOM05M003798 ORTHO05M002356 8.9e-15 82.8 78 51.3
MBI05_g23316_MAGBIO Magnolia biondii HOM05M002371 ORTHO05M011429 2.0e-14 81.6 42 95.2
Asa8G04996 Allium sativum HOM05M002371 ORTHO05M002356 5.8e-14 80.1 79 55.7
TraesCS1D03G0345300 Triticum aestivum HOM05M003798 ORTHO05M002356 6.4e-13 76.6 60 58.3
GWHGASIY037548 Secale cereale HOM05M003798 ORTHO05M002356 7.0e-12 73.2 78 50.0
Asa7G01605 Allium sativum HOM05M002371 ORTHO05M002356 6.0e-11 70.1 45 73.3
Horvu_MOREX_3H01G273800 Hordeum vulgare HOM05M003798 ORTHO05M002356 6.0e-11 70.1 64 56.2
AET5Gv20783200 Aegilops tauschii HOM05M002371 ORTHO05M002356 1.0e-10 69.3 34 97.1
AET0Gv20065900 Aegilops tauschii HOM05M003798 ORTHO05M002356 4.3e-09 63.9 47 61.7
p5.00_sc13706_p0001 Elaeis guineensis HOM05M003798 ORTHO05M002356 1.2e-08 62.4 77 45.5
DDU608G0025 Dioscorea dumetorum HOM05M003798 ORTHO05M002356 2.1e-08 61.6 45 60.0
SEGI_23966 Sequoiadendron giganteum HOM05M003798 ORTHO05M002356 7.5e-06 53.1 62 41.9
AET0Gv20078500 Aegilops tauschii HOM05M003798 ORTHO05M002356 9.8e-06 52.8 36 66.7
AET0Gv20079200 Aegilops tauschii HOM05M003798 ORTHO05M002356 9.8e-06 52.8 36 66.7
AET0Gv20092300 Aegilops tauschii HOM05M003798 ORTHO05M002356 9.8e-06 52.8 36 66.7
AET0Gv20098600 Aegilops tauschii HOM05M003798 ORTHO05M002356 9.8e-06 52.8 36 66.7
AET2Gv20395600 Aegilops tauschii HOM05M003798 ORTHO05M002356 9.8e-06 52.8 36 66.7
AET7Gv20591100 Aegilops tauschii HOM05M003798 ORTHO05M002356 9.8e-06 52.8 36 66.7
GWHGAZTO058149 Oryza alta HOM05M000961 ORTHO05M001347 9.8e-06 52.8 86 36.0
OB09G14840 Oryza brachyantha HOM05M002371 ORTHO05M003682 9.8e-06 52.8 29 89.7
TRIDC5AG067710 Triticum dicoccoides HOM05M000961 ORTHO05M001347 9.8e-06 52.8 84 35.7
TRIDC6BG036450 Triticum dicoccoides HOM05M003798 ORTHO05M002356 9.8e-06 52.8 36 66.7


User provided reference genes

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