Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
V3.Lp_chr7_0.1G8392 Lolium perenne HOM05M001115 ORTHO05M005454 1.3e-64 248.8 131 100.0
V3.Lp_scaffold_4559G18 Lolium perenne HOM05M001115 ORTHO05M005454 1.3e-64 248.8 131 100.0
V3.Lp_scaffold_4807G16 Lolium perenne HOM05M001115 ORTHO05M005454 1.3e-64 248.8 131 100.0
V3.Lp_scaffold_891G6 Lolium perenne HOM05M001115 ORTHO05M005454 1.3e-64 248.8 131 100.0
GWHGASIY019870 Secale cereale HOM05M001115 ORTHO05M005454 1.9e-63 245.0 131 97.7
TRIDC3AG037480 Triticum dicoccoides HOM05M001115 ORTHO05M005454 9.6e-63 242.7 131 96.9
AET1Gv20467400 Aegilops tauschii HOM05M001115 ORTHO05M005454 1.6e-62 241.9 131 97.7
Pahal.3G034100 Panicum hallii HOM05M001115 ORTHO05M005454 1.6e-62 241.9 131 95.4
TRIDC7BG017830 Triticum dicoccoides HOM05M001115 ORTHO05M005454 1.6e-62 241.9 131 96.9
OsKitaake07g111000 Oryza sativa Kitaake HOM05M001115 ORTHO05M005454 4.7e-62 240.4 131 95.4
OsKitaake10g165832 Oryza sativa Kitaake HOM05M001115 ORTHO05M005454 4.7e-62 240.4 131 95.4
Bradi2g13077 Brachypodium distachyon HOM05M001115 ORTHO05M005454 1.4e-61 238.8 131 93.9
TraesCS3B03G0454200 Triticum aestivum HOM05M001115 ORTHO05M005454 1.4e-61 238.8 131 95.4
Ot_Chr7_gn38431 Oropetium thomaeum HOM05M001115 ORTHO05M005454 1.8e-61 238.4 131 94.7
Ot_Chr7_gn38432 Oropetium thomaeum HOM05M001115 ORTHO05M005454 1.8e-61 238.4 131 94.7
Ot_Chr7_gn38433 Oropetium thomaeum HOM05M001115 ORTHO05M005454 1.8e-61 238.4 131 94.7
Ot_Un136_gn40169 Oropetium thomaeum HOM05M001115 ORTHO05M005454 1.8e-61 238.4 131 94.7
Ot_Un168_gn40609 Oropetium thomaeum HOM05M001115 ORTHO05M005454 1.8e-61 238.4 131 94.7
Ot_Un171_gn40698 Oropetium thomaeum HOM05M001115 ORTHO05M005454 1.8e-61 238.4 131 94.7
Ot_Un3_gn40920 Oropetium thomaeum HOM05M001115 ORTHO05M005454 1.8e-61 238.4 131 94.7
Ot_Un9_gn41210 Oropetium thomaeum HOM05M001115 ORTHO05M005454 1.8e-61 238.4 131 94.7
OsKitaake06g252800 Oryza sativa Kitaake HOM05M001115 ORTHO05M005454 1.8e-61 238.4 131 94.7
OsR498G0612783800.01 Oryza sativa ssp. indica HOM05M001115 ORTHO05M005454 2.4e-61 238.0 130 94.6
TRITD5Bv1G141970 Triticum turgidum HOM05M001115 ORTHO05M005454 7.6e-60 233.0 130 93.8
OsR498G0511369000.01 Oryza sativa ssp. indica HOM05M001115 ORTHO05M005454 1.5e-55 218.8 121 93.4
Aco024830 Ananas comosus HOM05M001115 ORTHO05M005454 6.9e-53 209.9 119 89.9
AET1Gv20912500 Aegilops tauschii HOM05M001115 ORTHO05M005454 2.6e-52 208.0 120 92.5
OsKitaake10g165814 Oryza sativa Kitaake HOM05M001115 ORTHO05M005454 4.2e-50 200.7 131 83.2
Seita.J016700 Setaria italica HOM05M001115 ORTHO05M005454 1.5e-44 182.2 99 96.0
TRITD3Bv1G075950 Triticum turgidum HOM05M001115 ORTHO05M005454 1.2e-41 172.6 94 96.8
V3.Lp_chr3_0G21870 Lolium perenne HOM05M001115 ORTHO05M005454 2.7e-41 171.4 94 97.9
Zm00007a00022333 Zea mays B104 HOM05M001634 ORTHO05M001555 2.7e-41 171.4 94 92.6
Solyc11g021213.1 Solanum lycopersicum HOM05M001115 ORTHO05M005454 1.1e-34 149.4 127 66.9
Solyc01g065620.1 Solanum lycopersicum HOM05M001115 ORTHO05M005454 9.6e-31 136.3 113 66.4
AET3Gv21044600 Aegilops tauschii HOM05M001115 ORTHO05M005454 5.8e-28 127.1 82 80.5
TRIDC4AG024280 Triticum dicoccoides HOM05M001115 ORTHO05M005454 1.1e-23 112.8 68 92.6
MBI10_g47590_MAGBIO Magnolia biondii HOM05M001115 ORTHO05M005454 1.9e-23 112.1 65 78.5
Misin04G291600 Miscanthus sinensis HOM05M001115 ORTHO05M005454 3.3e-23 111.3 66 92.4
TraesCS4A03G0394000 Triticum aestivum HOM05M001115 ORTHO05M005454 3.3e-23 111.3 68 91.2
Sevir.2G372650 Setaria viridis HOM05M001115 ORTHO05M005454 9.7e-23 109.8 62 82.3
SMO086G0020 Selaginella moellendorffii HOM05M001115 ORTHO05M005454 8.5e-19 96.7 115 53.9
AET6Gv20782800 Aegilops tauschii HOM05M001115 ORTHO05M005454 9.4e-18 93.2 57 84.2
SEGI_13011 Sequoiadendron giganteum HOM05M001115 ORTHO05M005454 1.4e-16 89.4 66 74.2
MisinT203100 Miscanthus sinensis HOM05M001115 ORTHO05M005454 1.8e-16 89.0 131 46.6
Potri.008G202133 Populus trichocarpa HOM05M001115 ORTHO05M005454 7.4e-15 83.6 89 55.1
Solyc01g065585.1 Solanum lycopersicum HOM05M001115 ORTHO05M005454 4.8e-14 80.9 67 70.1
Solyc01g065640.3 Solanum lycopersicum HOM05M001115 ORTHO05M005454 2.4e-13 78.6 60 63.3
Solyc02g011740.1 Solanum lycopersicum HOM05M001115 ORTHO05M005454 4.7e-09 64.3 128 33.6
Solyc01g065610.1 Solanum lycopersicum HOM05M001115 ORTHO05M005454 1.4e-08 62.8 50 70.0


User provided reference genes

Program Settings