Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
V3.Lp_chr3_0G42 Lolium perenne HOM05M004769 ORTHO05M005643 2.0e-305 1050.8 512 100.0
V3.Lp_scaffold_4680G18 Lolium perenne HOM05M004769 ORTHO05M005643 2.0e-305 1050.8 512 100.0
TraesCS5D03G0936800 Triticum aestivum HOM05M004769 ORTHO05M005643 1.7e-269 931.4 513 90.4
GWHGASIY019919 Secale cereale HOM05M004769 ORTHO05M005643 1.9e-255 884.8 513 86.9
OsR498G0022239400.01 Oryza sativa ssp. indica HOM05M004769 ORTHO05M005643 3.9e-253 877.1 512 84.6
AET3Gv21194100 Aegilops tauschii HOM05M004769 ORTHO05M005643 1.3e-245 852.0 469 90.4
GWHGASIY001716 Secale cereale HOM05M004769 ORTHO05M005643 5.6e-244 846.7 513 83.8
Zm00007a00030989 Zea mays B104 HOM05M004769 ORTHO05M005643 4.6e-238 827.0 510 81.6
GWHGAORA054660 Cenchrus purpureus HOM05M004769 ORTHO05M005643 7.4e-220 766.5 508 77.0
OsKitaake08g175100 Oryza sativa Kitaake HOM05M004769 ORTHO05M005643 8.0e-214 746.5 431 84.9
Horvu_MOREX_Un01G099900 Hordeum vulgare HOM05M004769 ORTHO05M005643 2.8e-190 668.3 364 89.0
Aco024841 Ananas comosus HOM05M004769 ORTHO05M005643 2.3e-184 648.7 485 69.1
Asa8G05135 Allium sativum HOM05M004769 ORTHO05M005643 2.5e-175 618.6 518 61.4
GWHGASIY019885 Secale cereale HOM05M004769 ORTHO05M005643 5.1e-160 567.8 315 87.9
GWHGAORA002983 Cenchrus purpureus HOM05M004769 ORTHO05M005643 8.9e-157 557.0 331 84.9
Seita.J018000 Setaria italica HOM05M004769 ORTHO05M005643 1.5e-151 539.7 510 59.4
Ot_Un136_gn40178 Oropetium thomaeum HOM05M004769 ORTHO05M005643 2.7e-145 518.8 510 56.5
Ot_Un136_gn40188 Oropetium thomaeum HOM05M004769 ORTHO05M005643 2.7e-145 518.8 510 56.5
Ot_Un171_gn40706 Oropetium thomaeum HOM05M004769 ORTHO05M005643 2.7e-145 518.8 510 56.5
Ot_Un3_gn40929 Oropetium thomaeum HOM05M004769 ORTHO05M005643 2.7e-145 518.8 510 56.5
Misin15G075800 Miscanthus sinensis HOM05M004769 ORTHO05M005643 2.3e-144 515.8 315 82.2
AET5Gv20016500 Aegilops tauschii HOM05M004769 ORTHO05M005643 6.6e-144 514.2 293 89.4
ATCG00040 Arabidopsis thaliana HOM05M004769 ORTHO05M005643 3.0e-136 488.8 511 51.1
Potri.013G138201 Populus trichocarpa HOM05M004769 ORTHO05M005643 5.6e-135 484.6 513 52.8
Asa1G03435 Allium sativum HOM05M004769 ORTHO05M005643 1.4e-125 453.4 359 62.7
Pahal.3G359400 Panicum hallii HOM05M004769 ORTHO05M005643 6.9e-125 451.1 256 83.2
Solyc00g500048.1 Solanum lycopersicum HOM05M004769 ORTHO05M005643 6.1e-121 438.0 510 50.2
Solyc00g500131.1 Solanum lycopersicum HOM05M004769 ORTHO05M005643 6.1e-121 438.0 510 50.2
Solyc00g500201.1 Solanum lycopersicum HOM05M004769 ORTHO05M005643 6.1e-121 438.0 510 50.2
Solyc00g500295.1 Solanum lycopersicum HOM05M004769 ORTHO05M005643 6.1e-121 438.0 510 50.2
Solyc00g500330.1 Solanum lycopersicum HOM05M004769 ORTHO05M005643 6.1e-121 438.0 510 50.2
TRIDC7BG017690 Triticum dicoccoides HOM05M004769 ORTHO05M005643 1.4e-114 416.8 230 88.7
TRITD4Av1G029550 Triticum turgidum HOM05M004769 ORTHO05M005643 6.3e-110 401.4 217 89.4
Aco021218 Ananas comosus HOM05M004769 ORTHO05M005643 4.1e-109 398.7 486 48.8
TRIDC3AG032880 Triticum dicoccoides HOM05M004769 ORTHO05M005643 6.5e-99 364.8 208 89.9
TRIDC2AG035200 Triticum dicoccoides HOM05M004769 ORTHO05M005643 2.5e-98 362.8 236 79.7
TraesCS6D03G0168300 Triticum aestivum HOM05M004769 ORTHO05M005643 5.5e-98 361.7 203 91.6
TraesCS1D03G0462100 Triticum aestivum HOM05M004769 ORTHO05M005643 7.2e-98 361.3 207 89.9
GWHGAORA054270 Cenchrus purpureus HOM05M004769 ORTHO05M005643 1.2e-97 360.5 468 48.7
AET1Gv20467100 Aegilops tauschii HOM05M004769 ORTHO05M005643 3.3e-95 352.4 205 89.3
Pahal.9G306750 Panicum hallii HOM05M004769 ORTHO05M005643 2.4e-93 346.3 214 79.0
GWHGAORA005983 Cenchrus purpureus HOM05M004769 ORTHO05M005643 2.7e-92 342.8 273 67.8
Horvu_MOREX_2H01G759300 Hordeum vulgare HOM05M004769 ORTHO05M005643 4.7e-89 332.0 211 82.5
OB03G33090 Oryza brachyantha HOM05M004769 ORTHO05M005643 5.2e-88 328.6 195 84.1
TRIDC1BG048740 Triticum dicoccoides HOM05M004769 ORTHO05M005643 1.1e-82 310.8 166 91.6
Bradi5g10968 Brachypodium distachyon HOM05M004769 ORTHO05M005643 1.5e-82 310.5 179 84.9
Horvu_MOREX_2H01G761600 Hordeum vulgare HOM05M004769 ORTHO05M005643 1.9e-82 310.1 163 89.6
AET1Gv20174000 Aegilops tauschii HOM05M004769 ORTHO05M005643 1.6e-81 307.0 182 88.5
TraesCS1D03G0161600 Triticum aestivum HOM05M004769 ORTHO05M005643 6.1e-81 305.1 182 87.9
Bradi4g19713 Brachypodium distachyon HOM05M004769 ORTHO05M005643 8.8e-80 301.2 258 60.5
Horvu_MOREX_2H01G761700 Hordeum vulgare HOM05M004769 ORTHO05M005643 1.6e-76 290.4 169 88.8
TRIDC5BG079290 Triticum dicoccoides HOM05M004769 ORTHO05M005643 7.3e-74 281.6 158 90.5
TRIDC5AG060900 Triticum dicoccoides HOM05M004769 ORTHO05M005643 1.2e-71 274.2 158 89.2
AET0Gv20103400 Aegilops tauschii HOM05M004769 ORTHO05M005643 1.7e-70 270.4 149 89.3
AET6Gv20238000 Aegilops tauschii HOM05M004769 ORTHO05M005643 1.7e-70 270.4 149 89.3
V3.Lp_chr3_0G11492 Lolium perenne HOM05M004769 ORTHO05M005643 1.9e-66 256.9 119 100.0
TRIDC5BG041250 Triticum dicoccoides HOM05M004769 ORTHO05M005643 8.0e-65 251.5 157 82.8
TRIDC6AG026840 Triticum dicoccoides HOM05M004769 ORTHO05M005643 3.4e-63 246.1 157 81.5
OsKitaake10g045066 Oryza sativa Kitaake HOM05M004769 ORTHO05M005643 6.0e-60 235.3 199 62.3
Zm00007a00026149 Zea mays B104 HOM05M004769 ORTHO05M005643 7.8e-60 235.0 187 68.4
TRIDC4BG026980 Triticum dicoccoides HOM05M004769 ORTHO05M005643 1.1e-58 231.1 145 82.8
Ma06_g24840 Musa acuminata HOM05M004769 ORTHO05M005643 8.9e-56 221.5 152 71.7
TRITD3Bv1G040990 Triticum turgidum HOM05M004769 ORTHO05M005643 2.2e-54 216.9 123 89.4
Horvu_MOREX_5H01G020800 Hordeum vulgare HOM05M004769 ORTHO05M005643 1.4e-48 197.6 112 80.4
TraesCS4A03G0388800 Triticum aestivum HOM05M004769 ORTHO05M005643 1.4e-48 197.6 122 80.3
TRIDC4AG059860 Triticum dicoccoides HOM05M004769 ORTHO05M005643 1.6e-41 174.1 152 61.2
Horvu_MOREX_5H01G017400 Hordeum vulgare HOM05M004769 ORTHO05M005643 5.2e-40 169.1 99 82.8
Bradi5g10965 Brachypodium distachyon HOM05M004769 ORTHO05M005643 8.9e-40 168.3 103 79.6
Horvu_MOREX_7H01G738800 Hordeum vulgare HOM05M004769 ORTHO05M005643 9.9e-39 164.9 96 82.3
Horvu_MOREX_2H01G420700 Hordeum vulgare HOM05M004769 ORTHO05M005643 3.3e-34 149.8 135 57.8
Horvu_MOREX_7H01G296000 Hordeum vulgare HOM05M004769 ORTHO05M005643 1.3e-33 147.9 95 71.6
OsR498G1221354900.01 Oryza sativa ssp. indica HOM05M004769 ORTHO05M005643 3.1e-32 143.3 73 89.0
Misin04G251300 Miscanthus sinensis HOM05M004769 ORTHO05M005643 4.5e-31 139.4 116 65.5
Misin09G055200 Miscanthus sinensis HOM05M004769 ORTHO05M005643 7.6e-31 138.7 86 73.3
TRIDC5AG052100 Triticum dicoccoides HOM05M004769 ORTHO05M005643 6.6e-27 125.6 120 54.2
Solyc09g061390.1 Solanum lycopersicum HOM05M004769 ORTHO05M005643 9.0e-24 115.2 121 52.9
OsR498G1018315800.01 Oryza sativa ssp. indica HOM05M004769 ORTHO05M005643 3.4e-23 113.2 86 70.9
Asa4G06388 Allium sativum HOM05M004769 ORTHO05M005643 4.5e-23 112.8 83 63.9
Asa8G02618 Allium sativum HOM05M004769 ORTHO05M005643 7.4e-18 95.5 84 60.7
SMO086G0023 Selaginella moellendorffii HOM05M004769 ORTHO05M005643 1.2e-15 88.2 423 26.7
Os11g0517350 Oryza sativa ssp. japonica HOM05M004769 ORTHO05M005643 8.4e-14 82.0 60 65.0
Horvu_MOREX_2H01G371800 Hordeum vulgare HOM05M004769 ORTHO05M005643 1.2e-12 78.2 42 81.0
TraesCS4A03G0390900 Triticum aestivum HOM05M004769 ORTHO05M005643 7.4e-10 68.9 34 85.3
Ma08_g13580 Musa acuminata HOM05M004769 ORTHO05M005643 4.5e-07 59.7 45 62.2


User provided reference genes

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