Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
V3.Lp_chr3_0G14954 Lolium perenne HOM05M006261 ORTHO05M008803 9.0e-33 142.1 67 100.0
V3.Lp_chr3_0G14956 Lolium perenne HOM05M006261 ORTHO05M008803 9.0e-33 142.1 67 100.0
V3.Lp_chr3_0G2 Lolium perenne HOM05M006261 ORTHO05M008803 9.0e-33 142.1 67 100.0
V3.Lp_chr7_0.1G1220 Lolium perenne HOM05M006261 ORTHO05M008803 9.0e-33 142.1 67 100.0
V3.Lp_chr7_0.1G1236 Lolium perenne HOM05M006261 ORTHO05M008803 9.0e-33 142.1 67 100.0
V3.Lp_chr7_0.1G8382 Lolium perenne HOM05M006261 ORTHO05M008803 9.0e-33 142.1 67 100.0
V3.Lp_scaffold_4559G24 Lolium perenne HOM05M006261 ORTHO05M008803 9.0e-33 142.1 67 100.0
V3.Lp_scaffold_4559G4 Lolium perenne HOM05M006261 ORTHO05M008803 9.0e-33 142.1 67 100.0
V3.Lp_scaffold_4807G2 Lolium perenne HOM05M006261 ORTHO05M008803 9.0e-33 142.1 67 100.0
V3.Lp_scaffold_4807G20 Lolium perenne HOM05M006261 ORTHO05M008803 9.0e-33 142.1 67 100.0
V3.Lp_scaffold_5331G12 Lolium perenne HOM05M006261 ORTHO05M008803 9.0e-33 142.1 67 100.0
V3.Lp_scaffold_891G20 Lolium perenne HOM05M006261 ORTHO05M008803 9.0e-33 142.1 67 100.0
Horvu_MOREX_6H01G302400 Hordeum vulgare HOM05M006261 ORTHO05M008803 2.6e-32 140.6 67 98.5
Horvu_MOREX_Un01G091200 Hordeum vulgare HOM05M006261 ORTHO05M008803 2.6e-32 140.6 67 98.5
Horvu_MOREX_Un01G097400 Hordeum vulgare HOM05M006261 ORTHO05M008803 2.6e-32 140.6 67 98.5
Horvu_MOREX_Un01G100600 Hordeum vulgare HOM05M006261 ORTHO05M008803 2.6e-32 140.6 67 98.5
TraesCS1B03G0673000 Triticum aestivum HOM05M006261 ORTHO05M008803 2.6e-32 140.6 67 98.5
TraesCS3B03G0453000 Triticum aestivum HOM05M006261 ORTHO05M008803 2.6e-32 140.6 67 98.5
TraesCS3D03G1070400 Triticum aestivum HOM05M006261 ORTHO05M008803 2.6e-32 140.6 67 98.5
TraesCS3D03G1100700 Triticum aestivum HOM05M006261 ORTHO05M008803 2.6e-32 140.6 67 98.5
TraesCS6A03G0412800 Triticum aestivum HOM05M006261 ORTHO05M008803 2.6e-32 140.6 67 98.5
TraesCS6B03G0738000 Triticum aestivum HOM05M006261 ORTHO05M008803 2.6e-32 140.6 67 98.5
TraesCS7A03G0607800 Triticum aestivum HOM05M006261 ORTHO05M008803 2.6e-32 140.6 67 98.5
TraesCS7B03G0970300 Triticum aestivum HOM05M006261 ORTHO05M008803 2.6e-32 140.6 67 98.5
TRIDC3AG012360 Triticum dicoccoides HOM05M006261 ORTHO05M008803 2.6e-32 140.6 67 98.5
Horvu_MOREX_2H01G374500 Hordeum vulgare HOM05M006261 ORTHO05M008803 3.4e-32 140.2 67 97.0
OsKitaake03g352800 Oryza sativa Kitaake HOM05M006261 ORTHO05M008803 4.5e-32 139.8 67 97.0
OsKitaake08g086400 Oryza sativa Kitaake HOM05M006261 ORTHO05M008803 4.5e-32 139.8 67 97.0
OsKitaake10g165806 Oryza sativa Kitaake HOM05M006261 ORTHO05M008803 4.5e-32 139.8 67 97.0
OsKitaakeM051305 Oryza sativa Kitaake HOM05M006261 ORTHO05M008803 4.5e-32 139.8 67 97.0
TraesCS1B03G1091900 Triticum aestivum HOM05M006261 ORTHO05M008803 5.8e-32 139.4 67 97.0
TraesCS3A03G1064400 Triticum aestivum HOM05M006261 ORTHO05M008803 5.8e-32 139.4 67 97.0
TraesCS3A03G1064500 Triticum aestivum HOM05M006261 ORTHO05M008803 5.8e-32 139.4 67 97.0
TraesCS5B03G0649800 Triticum aestivum HOM05M006261 ORTHO05M008803 7.6e-32 139.0 67 97.0
TraesCS2D03G0545700 Triticum aestivum HOM05M006261 ORTHO05M008803 9.9e-32 138.7 67 97.0
TraesCS5D03G0202500 Triticum aestivum HOM05M006261 ORTHO05M008803 9.9e-32 138.7 67 95.5
Bradi3g25891 Brachypodium distachyon HOM05M006261 ORTHO05M008803 1.3e-31 138.3 67 97.0
Horvu_MOREX_3H01G452700 Hordeum vulgare HOM05M006261 ORTHO05M008803 1.3e-31 138.3 67 97.0
TraesCS1D03G0472600 Triticum aestivum HOM05M006261 ORTHO05M008803 1.3e-31 138.3 67 97.0
Pahal.9G286700 Panicum hallii HOM05M006261 ORTHO05M008803 1.7e-31 137.9 67 95.5
Pahal.9G287000 Panicum hallii HOM05M006261 ORTHO05M008803 1.7e-31 137.9 67 95.5
Seita.J016000 Setaria italica HOM05M006261 ORTHO05M008803 1.7e-31 137.9 67 95.5
Pahal.3G366100 Panicum hallii HOM05M006261 ORTHO05M008803 3.8e-31 136.7 67 94.0
TraesCS1A03G0930700 Triticum aestivum HOM05M006261 ORTHO05M008803 3.8e-31 136.7 67 97.0
TraesCS7A03G0156200 Triticum aestivum HOM05M006261 ORTHO05M008803 3.8e-31 136.7 67 95.5
Pahal.4G130250 Panicum hallii HOM05M006261 ORTHO05M008803 4.9e-31 136.3 67 94.0
OB01G31560 Oryza brachyantha HOM05M006261 ORTHO05M008803 6.4e-31 136.0 67 94.0
Horvu_MOREX_2H01G296800 Hordeum vulgare HOM05M006261 ORTHO05M008803 1.1e-30 135.2 66 93.9
Pahal.9G361500 Panicum hallii HOM05M006261 ORTHO05M008803 1.4e-30 134.8 67 94.0
TraesCS7B03G1064100 Triticum aestivum HOM05M006261 ORTHO05M008803 1.9e-30 134.4 67 95.5
TraesCS4A03G0392900 Triticum aestivum HOM05M006261 ORTHO05M008803 2.4e-30 134.0 67 92.5
TraesCS2A03G0957000 Triticum aestivum HOM05M006261 ORTHO05M008803 3.2e-30 133.7 67 94.0
Horvu_MOREX_6H01G302000 Hordeum vulgare HOM05M006261 ORTHO05M008803 5.5e-30 132.9 67 91.0
TraesCS5D03G1006900 Triticum aestivum HOM05M006261 ORTHO05M008803 1.6e-29 131.3 67 92.5
V3.Lp_chr4_0G25522 Lolium perenne HOM05M006261 ORTHO05M008803 2.1e-29 131.0 67 92.5
Horvu_MOREX_4H01G182700 Hordeum vulgare HOM05M006261 ORTHO05M008803 2.7e-29 130.6 67 92.5
TraesCS2A03G0560600 Triticum aestivum HOM05M006261 ORTHO05M008803 1.8e-28 127.9 64 92.2
GWHGASIY018535 Secale cereale HOM05M006261 ORTHO05M008803 8.1e-26 119.0 70 82.9
Spipo0G0088300 Spirodela polyrhiza HOM05M006261 ORTHO05M008803 8.7e-20 99.0 51 88.2
Potri.011G074033 Populus trichocarpa HOM05M006261 ORTHO05M008803 3.3e-19 97.1 51 86.3
HPP92_028430 Vanilla planifolia HOM05M006261 ORTHO05M008803 3.7e-18 93.6 51 84.3
Mapoly0147s0015 Marchantia polymorpha HOM05M006261 ORTHO05M008803 2.2e-15 84.3 50 78.0
HPP92_028383 Vanilla planifolia HOM05M006261 ORTHO05M015211 1.0e-12 75.5 44 77.3
HPP92_028406 Vanilla planifolia HOM05M006261 ORTHO05M015211 1.0e-12 75.5 44 77.3
HPP92_028415 Vanilla planifolia HOM05M006261 ORTHO05M015211 1.0e-12 75.5 44 77.3
HPP92_028419 Vanilla planifolia HOM05M006261 ORTHO05M015211 1.0e-12 75.5 44 77.3
HPP92_028432 Vanilla planifolia HOM05M006261 ORTHO05M015211 1.0e-12 75.5 44 77.3
Glyma.06G274000 Glycine max HOM05M006261 ORTHO05M008803 1.3e-10 68.6 51 62.7
Asa3G03841 Allium sativum HOM05M001586 ORTHO05M001487 3.2e-06 53.9 24 95.8


User provided reference genes

Program Settings